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Publication search results
found 64 matches
- 2023
- Timothy Bergquist, Thomas Schaffter, Yao Yan, Thomas Yu, Justin Prosser, Jifan Gao, Guanhua Chen, Lukasz Charzewski, Zofia Nawalany, Ivan Brugere, Renata Retkute, Alidivinas Prusokas, Augustinas Prusokas, Yonghwa Choi, Sanghoon Lee, Junseok Choe, Inggeol Lee, Sunkyu Kim, Jaewoo Kang, Sean D. Mooney, Justin Guinney:
Evaluation of crowdsourced mortality prediction models as a framework for assessing artificial intelligence in medicine. J. Am. Medical Informatics Assoc. 31(1): 35-44 (2023) - Chethan Jujjavarapu, Pradeep Suri, Vikas Pejaver, Janna Friedly, Laura S. Gold, Eric Meier, Trevor Cohen, Sean D. Mooney, Patrick J. Heagerty, Jeffrey G. Jarvik:
Predicting decompression surgery by applying multimodal deep learning to patients' structured and unstructured health data. BMC Medical Informatics Decis. Mak. 23(1): 2 (2023) - 2022
- Lan Wei, Soraia Ventura, Mary Anne Ryan, Sean Mathieson, Geraldine B. Boylan, Madeleine M. Lowery, Catherine Mooney:
Deep-spindle: An automated sleep spindle detection system for analysis of infant sleep spindles. Comput. Biol. Medicine 150: 106096 (2022) - Lan Wei, Soraia Ventura, Sean Mathieson, Geraldine B. Boylan, Madeleine M. Lowery, Catherine Mooney:
Spindle-AI: Sleep Spindle Number and Duration Estimation in Infant EEG. IEEE Trans. Biomed. Eng. 69(1): 465-474 (2022) - Chao Yan, Yao Yan, Ziqi Zhang, Zhiyu Wan, Justin Guinney, Sean D. Mooney, Bradley A. Malin:
Assessing Machine Learning Based Generators for Synthetic Electronic Health Records: A Benchmarking. AMIA 2022 - Serena Jinchen Xie, Flavia Kapos, Stephen J. Mooney, Sean D. Mooney, Kari A. Stephens, Andrea L. Hartzler, Abhishek Pratap:
Geospatial divide in real-world EHR data: Analytical workflow to assess regional biases and potential impact on health equity. AMIA 2022 - Yao Yan, Thomas Yu, Kathleen Muenzen, Sijia Liu, Connor Boyle, George Koslowski, Jiaxin Zheng, Nicholas J. Dobbins, Clement Essien, Hongfang Liu, Larsson Omberg, Meliha Yestigen, Bradley Taylor, James A. Eddy, Justin Guinney, Sean D. Mooney, Thomas Schaffter:
The NLP Sandbox: an efficient model-to-data system to enable federated and unbiased evaluation of clinical NLP models. CoRR abs/2206.14181 (2022) - Chao Yan, Yao Yan, Zhiyu Wan, Ziqi Zhang, Larsson Omberg, Justin Guinney, Sean D. Mooney, Bradley A. Malin:
A Multifaceted Benchmarking of Synthetic Electronic Health Record Generation Models. CoRR abs/2208.01230 (2022) - 2021
- Jimmy Phuong, Christina Bandaragoda, Shefali Haldar, Kari A. Stephens, Patricia Ordóñez, Sean D. Mooney, Andrea L. Hartzler:
Information needs and priority use cases of population health researchers to improve preparedness for future hurricanes and floods. J. Am. Medical Informatics Assoc. 28(2): 249-260 (2021) - Diane M. Korngiebel, Sean D. Mooney:
Considering the possibilities and pitfalls of Generative Pre-trained Transformer 3 (GPT-3) in healthcare delivery. npj Digit. Medicine 4 (2021) - Brett A. Becker, Catherine Mooney, Amruth N. Kumar, Seán Russell:
A Simple, Language-Independent Approach to Identifying Potentially At-Risk Introductory Programming Students. ACE 2021: 168-175 - Yao Yan, Thomas Schaffter, Timothy Bergquist, Thomas Yu, Justin Prosser, Sean D. Mooney, Justin Guinney:
A Continuous Crowd-sourced Challenge for Benchmarking COVID-19 Health Outcome Prediction. AMIA 2021 - Lara M. Mangravite, Sean D. Mooney, Iddo Friedberg, Justin Guinney:
Establishing the reliability of algorithms. PSB 2021 - 2020
- Timothy Bergquist, Yao Yan, Thomas Schaffter, Thomas Yu, Vikas Pejaver, Noah Hammarlund, Justin Prosser, Justin Guinney, Sean D. Mooney:
Piloting a model-to-data approach to enable predictive analytics in health care through patient mortality prediction. J. Am. Medical Informatics Assoc. 27(9): 1393-1400 (2020) - Nicholas J. Dobbins, Clifford H. Spital, Robert A. Black, Jason M. Morrison, Bas de Veer, Elizabeth Zampino, Robert D. Harrington, Bethene D. Britt, Kari A. Stephens, Adam B. Wilcox, Peter Tarczy-Hornoch, Sean D. Mooney:
Leaf: an open-source, model-agnostic, data-driven web application for cohort discovery and translational biomedical research. J. Am. Medical Informatics Assoc. 27(1): 109-118 (2020) - Abhishek Pratap, Elias Chaibub Neto, Phil Snyder, Carl Stepnowsky, Noémie Elhadad, Daniel Grant, Matthew H. Mohebbi, Sean D. Mooney, Christine Suver, John Wilbanks, Lara M. Mangravite, Patrick J. Heagerty, Pat A. Areán, Larsson Omberg:
Indicators of retention in remote digital health studies: a cross-study evaluation of 100, 000 participants. npj Digit. Medicine 3 (2020) - Lan Wei, Soraia Ventura, Madeleine M. Lowery, Mary Anne Ryan, Sean Mathieson, Geraldine B. Boylan, Catherine Mooney:
Random Forest-based Algorithm for Sleep Spindle Detection in Infant EEG. EMBC 2020: 58-61 - 2019
- Jimmy Phuong, Christina Bandaragoda, Erkan Istanbulluoglu, Claire Beveridge, Ronda Strauch, Landung Setiawan, Sean D. Mooney:
Automated retrieval, preprocessing, and visualization of gridded hydrometeorology data products for spatial-temporal exploratory analysis and intercomparison. Environ. Model. Softw. 116: 119-130 (2019) - Sean D. Mooney:
Continuing challenges swirl around bioinformatics service delivery. J. Biomed. Informatics 94 (2019) - Kymberleigh A. Pagel, Danny Antaki, Aojie Lian, Matthew E. Mort, David N. Cooper, Jonathan Sebat, Lilia M. Iakoucheva, Sean D. Mooney, Predrag Radivojac:
Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome. PLoS Comput. Biol. 15(6) (2019) - Timothy Bergquist, Vikas Pejaver, Noah Hammarlund, Sean D. Mooney, Stephen J. Mooney:
Detecting Seasonal, Holiday, and Rare Events from Trauma Data in the Electronic Health Record. AMIA 2019 - Yongqun He, Edison Ong, Jennifer Schaub, Frederick Dowd, John F. O'Toole, Anastasios Siapos, Christian G. Reich, Sarah Seager, Ling Wang, Hong Yu, Jie Zheng, Christian J. Stoeckert Jr., Xiaolin Yang, Sheng Yang, Becky Steck, Christopher Park, Laura Barisoni, Matthias Kretzler, Jonathan Himmelfarb, Ravi Iyengar, Sean D. Mooney:
OPMI: the Ontology of Precision Medicine and Investigation and its Support for Clinical Data and Metadata Representation and Analysis. ICBO 2019: 1-10 - Abhishek Pratap, Elias Chaibub Neto, Phil Snyder, Carl Stepnowsky, Noémie Elhadad, Daniel Grant, Matthew H. Mohebbi, Sean D. Mooney, Christine Suver, John Wilbanks, Lara M. Mangravite, Patricki J. Heagerty, Pat A. Areán, Larsson Omberg:
Indicators of retention in remote digital health studies: A cross-study evaluation of 100, 000 participants. CoRR abs/1910.01165 (2019) - 2018
- Mary Regina Boland, Pradipta Parhi, Li Li, Riccardo Miotto, Robert J. Carroll, Usman Iqbal, Phung-Anh (Alex) Nguyen, Martijn J. Schuemie, Seng Chan You, Donahue Smith, Sean D. Mooney, Patrick B. Ryan, Yu-Chuan (Jack) Li, Rae Woong Park, Joshua C. Denny, Joel T. Dudley, George Hripcsak, Pierre Gentine, Nicholas P. Tatonetti:
Uncovering exposures responsible for birth season - disease effects: a global study. J. Am. Medical Informatics Assoc. 25(3): 275-288 (2018) - Yongqun He, Becky Steck, Edison Ong, Laura Mariani, Chrysta Lienczewski, Ulysses J. Balis, Matthias Kretzler, Jonathan Himmelfarb, John F. Bertram, Evren U. Azeloglu, Ravi Iyengar, Deborah Hoshizaki, Sean D. Mooney:
KTAO: A Kidney Tissue Atlas Ontology to Support Community-Based Kidney Knowledge Base Development and Data Integration. ICBO 2018 - 2017
- Kymberleigh A. Pagel, Vikas Pejaver, Guan Ning Lin, Hyun-Jun Nam, Matthew E. Mort, David N. Cooper, Jonathan Sebat, Lilia M. Iakoucheva, Sean D. Mooney, Predrag Radivojac:
When loss-of-function is loss of function: assessing mutational signatures and impact of loss-of-function genetic variants. Bioinform. 33(14): i389-i398 (2017) - Abhishek Pratap, Joaquin A. Anguera, Brenna N. Renn, Elias Chaibub Neto, Joshua Volponi, Sean D. Mooney, Pat A. Areán:
The feasibility of using smartphones to assess and remediate depression in Hispanic/Latino individuals nationally. UbiComp/ISWC Adjunct 2017: 854-860 - Alexander A. Morgan, Dana C. Crawford, Joshua C. Denny, Sean D. Mooney, Bruce J. Aronow, Steven E. Brenner:
Session Introduction. PSB 2017: 348-355 - 2016
- Jose Lugo-Martinez, Vikas Pejaver, Kymberleigh A. Pagel, Shantanu Jain, Matthew E. Mort, David N. Cooper, Sean D. Mooney, Predrag Radivojac:
The Loss and Gain of Functional Amino Acid Residues Is a Common Mechanism Causing Human Inherited Disease. PLoS Comput. Biol. 12(8) (2016) - Meliha Yetisgen, Lucy Vanderwende, Tony Black, Sean D. Mooney, Peter Tarczy-Hornoch:
A New Way of Representing Clinical Reports for Rapid Phenotyping. CRI 2016
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