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ORCIDJournal of Open Source Software, Volume 4
Volume 4, Number 33, 2019
- Fei Xiang
, Bethany L. Dearlove, Simon D. W. Frost:
genieR: An R package for inference of demographic history of phylogenies. 634 - Kyle D. Peterson, Aaron R. Caldwell:
mbir: Magnitude-Based Inferences. 746 - Alexander LeNail:
NN-SVG: Publication-Ready Neural Network Architecture Schematics. 747 - Antoine Muller, Charles Pontonnier, Pierre Puchaud, Georges Dumont:
CusToM: a Matlab toolbox for musculoskeletal simulation. 927 - Daniel Hatton:
eights: BS 8888: 2011 first angle projection drawings from FreeCAD 3D model. 974 - Matias Carrasco Kind, Alex Drlica-Wagner, Audrey Koziol, Donald Petravick:
easyaccess: Enhanced SQL command line interpreter for astronomical surveys. 1022 - Vaishnav Tadiparthi, Shao-Chen Hsu, Raktim Bhattacharya:
STEDY: Software for TEnsegrity DYnamics. 1042 - Padraig T. Looney, Gordon N. Stevenson, Sally L. Collins:
3D ultrasound file reading and coordinate transformations. 1063 - Eric T. Dawson, Richard Durbin:
GFAKluge: A C++ library and command line utilities for the Graphical Fragment Assembly formats. 1083 - Matthew J. Gidden, Daniel Huppmann:
pyam: a Python Package for the Analysis and Visualization of Models of the Interaction of Climate, Human, and Environmental Systems. 1095 - Erica Christensen, Glenda Yenni, Hao Ye, Juniper Simonis, Ellen Bledsoe, Renata Diaz, Shawn D. Taylor, Ethan P. White, S. K. Morgan Ernest:
portalr: an R package for summarizing and using the Portal Project Data. 1098 - Morten Lund, John Rasmussen, Michael Skipper Andersen:
AnyPyTools: A Python package for reproducible research with the AnyBody Modeling System. 1108 - Zijie Zhao, Maxime Marin:
A MATLAB toolbox to detect and analyze marine heatwaves. 1124 - Pieter Gijsbers, Joaquin Vanschoren:
GAMA: Genetic Automated Machine learning Assistant. 1132 - David Meyer, Didier Thevenard:
PsychroLib: a library of psychrometric functions to calculate thermodynamic properties of air. 1137 - Blaise Thompson, Kyle Sunden, Darien Morrow, Daniel Kohler, John Wright:
WrightTools: a Python package for multidimensional spectroscopy. 1141 - Ravin Kumar, Colin Carroll, Ari Hartikainen, Osvaldo A. Martin:
ArviZ a unified library for exploratory analysis of Bayesian models in Python. 1143 - Ryan Hagenson:
swsc: A sitewise UCE partitioner. 1146 - Pingjun Chen, Lin Yang:
tissueloc: Whole slide digital pathology image tissue localization. 1148 - Alexander Fabisch:
pytransform3d: 3D Transformations for Python. 1159 - Michael C. Heiber:
KMC\_Lattice v2.0: An Object-Oriented C\texttt{++} Library for Custom Kinetic Monte Carlo Simulations. 1168 - Robin Lovelace, Malcolm Morgan, Layik Hama, Mark Padgham:
stats19: A package for working with open road crash data. 1181 - Jasper Ho, Garway Ng, Mathias Renaud, Art F. Y. Poon:
sierra-local: A lightweight standalone application for drug resistance prediction. 1186 - Kel N. Markert:
cartoee: Publication quality maps using Earth Engine. 1207
Volume 4, Number 34, February 2019
- Felix Ospald:
fibergen: An introductory tool for FFT-based material homogenization. 1027 - Sebastian Meyer:
polyCub: An R package for Integration over Polygons. 1056 - Patricia Wollstadt, Joseph T. Lizier, Raul Vicente, Conor Finn, Mario Martínez-Zarzuela, Pedro A. M. Mediano, Leonardo Novelli, Michael Wibral:
IDTxl: The Information Dynamics Toolkit xl: a Python package for the efficient analysis of multivariate information dynamics in networks. 1081 - Pieter Eendebak, Alan R. Vazquez:
OApackage: A Python package for generation and analysis of orthogonal arrays, optimal designs and conference designs. 1097 - Vincent Magnin, James Tappin, Jens Hunger, Jerry De Lisle:
gtk-fortran: a GTK+ binding to build Graphical User Interfaces in Fortran. 1109 - Iacopo Garizio:
Py-school-match: Matching algorithms to assign students to schools. 1111 - Jonathan Schnabel:
PyMS: Python for Mycorrhizal Symbiosis data analysis. 1125 - Brett M. Morris, Trevor Dorn-Wallenstein, Emily Levesque, Charli Sakari, Doug Gies, Katherine Lester, Yuta Notsu, Allison Youngblood, Russet McMillan:
arcesetc: ARC Echelle Spectrograph Exposure Time Calculator. 1130 - Thu-Hien To, Stephen M. Pederson:
strandCheckR: An R package for quantifying and removing double strand sequences for strand-specific RNA-seq. 1145 - August Guang:
RSeqAn: Headers and wrappers for the SeqAn library in R. 1160 - Sivaram Ambikasaran, Karan Singh, Shyam Sankaran:
HODLRlib: A Library for Hierarchical Matrices. 1167 - Gáspár Lukács:
CITapp - a response time-based Concealed Information Test lie detector web application. 1179 - Robert Meolic:
The Biddy BDD package. 1189 - Andreas Baum, Laurent Vermue:
Multiblock PLS: Block dependent prediction modeling for Python. 1190 - Kenneth R. Lyons, Benjamin W. L. Margolis:
AxoPy: A Python Library for Implementing Human-Computer Interface Experiments. 1191 - Andrew T. Jones, Jessica Bagnall, Hien Duy Nguyen:
BoltzMM: an R package for maximum pseudolikelihood estimation of fully-visible Boltzmann machines. 1193 - Mahmoud Gadalla, Marco Tezzele, Andrea Mola, Gianluigi Rozza:
BladeX: Python Blade Morphing. 1203 - Adam Symington, Joshua Tse, Marco Molinari, Arnaud Marmier, Stephen C. Parker:
surfinpy: A Surface Phase Diagram Generator. 1210 - Philipp S. Sommer, Dilan Rech, Manuel Chevalier, Basil Davis:
straditize: Digitizing stratigraphic diagrams. 1216 - Richard Teague:
eddy: Extracting Protoplanetary Disk Dynamics with Python. 1220 - Tommaso Leonardi:
Bedparse: feature extraction from BED files. 1228 - Adrien Leger, Tommaso Leonardi:
pycoQC, interactive quality control for Oxford Nanopore Sequencing. 1236 - Benjamin Wilson:
HyperNaut: a navigator for the hyperbolic plane. 1240 - Michael Notter, Dan Gale, Peer Herholz, Ross D. Markello, Marie-Laure Bielser, Kirstie J. Whitaker:
AtlasReader: A Python package to generate coordinate tables, region labels, and informative figures from statistical MRI images. 1257 - Sam Abbott:
getTBinR: an R package for accessing and summarising the World Health Organisation Tuberculosis data. 1260 - Alice Harpole, Michael Zingale, Ian Hawke, Taher Chegini:
pyro: a framework for hydrodynamics explorations and prototyping. 1265 - Mikkel Meyer Andersen:
mitolina: MITOchondrial LINeage Analysis. 1266 - Carl Boettiger:
Ecological Metadata as Linked Data. 1276 - Eric E. Brown:
tacmagic: Positron emission tomography analysis in R. 1281 - Evan Munson, Christopher Smith, Bradley C. Boehmke, Jason K. Freels:
Sentiment Analysis of Twitter Data (saotd). 764
Volume 4, Number 35, 2019
- Allison A. Throm, Anthony A. French:
CytobankAPIstats: Computes Signaling and Population Statistics for Cytometry Data on Cytobank using 'CytobankAPI'. 445 - Matthew D. Harris:
KLRfome - Kernel Logistic Regression on Focal Mean Embeddings. 722 - Viktor Polak, Yuezhang Zhu, Sung Bae, Jason Motha, Brendon Bradley, Hoby Razafindrakoto:
GMSimViz: Automated 3D Visualization of Ground Motion Simulation with Generic Mapping Tools (GMT). 808 - Henrik A. Kjeldsberg, Aslak Wigdahl Bergersen, Kristian Valen-Sendstad:
morphMan: Automated manipulation of vascular geometries. 1065 - Benjamin Bengfort, Rebecca Bilbro:
Yellowbrick: Visualizing the Scikit-Learn Model Selection Process. 1075 - Alexandros-Stavros Iliopoulos, Abhishek Kumar Dubey, Xiaobai Sun:
idvf: Iterative Inversion of Deformation Vector Field with Adaptive Bi-residual Feedback Control. 1076 - Steve Davis:
vcftoolz: a Python package for comparing and evaluating Variant Call Format files. 1144 - George Datseris, Joel Hobson:
MIDI.jl: Simple and intuitive handling of MIDI data. 1166 - Bernhard Fröhler, Johannes Weissenböck, Marcel Schiwarth, Johann Kastner, Christoph Heinzl:
open_iA: A tool for processing and visual analysis of industrial computed tomography datasets. 1185 - Victoria L. Rubin, Chris Brogly, Nadia Conroy, Yimin Chen, Sarah Cornwell, Toluwase Victor Asubiaro:
A News Verification Browser for the Detection of Clickbait, Satire, and Falsified News. 1208 - Georgina L. Wellock, Benjamin J. Morgan:
pyscses: a PYthon Space-Charge Site-Explicit Solver. 1209 - John D. Garrett, Ghassan Yassin:
QMix: A Python package for simulating the quasiparticle tunneling currents in SIS junctions. 1231 - Tormod Landet:
Ocellaris: a DG FEM solver for free-surface flows. 1239 - Scott P. Kolodziej, Mohsen Aznaveh, Matthew Bullock, Jarrett David, Timothy A. Davis, Matthew Henderson, Yifan Hu, Read Sandström:
The SuiteSparse Matrix Collection Website Interface. 1244 - Romain Thomas:
dfitspy: a dfits|fitsort implementation in python. 1249 - Amir M. Mir, Jalal A. Nasiri:
LightTwinSVM: A Simple and Fast Implementation of Standard Twin Support Vector Machine Classifier. 1252 - Alexander J. Gates, Yong-Yeol Ahn:
CluSim: a python package for calculating clustering similarity. 1264 - Emily C. Zabor:
riskclustr: Functions to Study Etiologic Heterogeneity. 1269 - Christian Holz, Eric Kemp-Benedict, Tom Athanasiou, Sivan Kartha:
The Climate Equity Reference Calculator. 1273 - Changcheng Li:
JuliaCall: an R package for seamless integration between R and Julia. 1284 - Arman Oganisian:
ChiRP: Chinese Restaurant Process Mixtures for Regression and Clustering. 1287 - Andrea Zonca, Leo P. Singer, Daniel Lenz, Martin Reinecke, Cyrille Rosset, Eric Hivon, Krzysztof M. Gorski:
healpy: equal area pixelization and spherical harmonics transforms for data on the sphere in Python. 1298 - Robert A Gilmore, Shaurita Hutchins, Xiao Zhang, Eric J. Vallender:
MicrobiomeR: An R Package for Simplified and Standardized Microbiome Analysis Workflows. 1299 - Matthew Bartos, Abhiram Mullapudi, Sara C. Troutman:
rrcf: Implementation of the Robust Random Cut Forest algorithm for anomaly detection on streams. 1336 - Ashkbiz Danehkar:
AtomNeb: IDL Library for Atomic Data of Ionized Nebulae. 898 - Andrew J. Page, Torsten Seemann:
TipToft: detecting plasmids contained in uncorrected long read sequencing data. 1021
Volume 4, Number 36, 2019
- Michael Stenskjær Christensen:
Samewords: Automatic word disambigation in critical text editions. 941 - Chad Curtis, Ariel Rokem, Elizabeth Nance:
diff_classifier: Parallelization of multi-particle tracking video analyses. 989 - Sebastian Lamprecht:
Pyoints: A Python package for point cloud, voxel and raster processing. 990 - Lyndon White, David Ellison:
Embeddings.jl: easy access to pretrained word embeddings from Julia. 1013 - Luis Benet, David P. Sanders:
TaylorSeries.jl: Taylor expansions in one and several variables in Julia. 1043 - Romain Beucher, Louis Moresi, Julian Giordani, John Mansour, Dan Sandiford, Rebecca Farrington, Luke Mondy, Claire Mallard, Patrice Rey, Guillaume Duclaux, Owen Kaluza, Arijit Laik, Sara Morón:
UWGeodynamics: A teaching and research tool for numerical geodynamic modelling. 1136 - Ian H. Bell:
CEGO: C++11 Evolutionary Global Optimization. 1147 - Maxim Terpilovskii:
scikit-posthocs: Pairwise multiple comparison tests in Python. 1169 - Lucas J. Koerner:
Instrbuilder: A Python package for electrical instrument control. 1172 - Daniel Leehr, Mercedes Gosby:
TraitDB: Web application database of phenotypic trait data. 1201 - Andrei Novikov:
PyClustering: Data Mining Library. 1230 - Gregory R. Lee, Ralf Gommers, Filip Wasilewski, Kai Wohlfahrt, Aaron O'Leary:
PyWavelets: A Python package for wavelet analysis. 1237 - Scott Cole, Thomas Donoghue, Richard Gao, Bradley Voytek:
NeuroDSP: A package for neural digital signal processing. 1272 - Nelle Varoquaux, Nicolas Servant:
iced: fast and memory efficient normalization of contact maps. 1286 - Zoe Meers, Robert Hickman, Thomas J. Leeper:
ggparliament: A ggplot2 extension for parliament plots in R. 1313 - Ryan R. Wick:
Badread: simulation of error-prone long reads. 1316 - HyoungAh Kim, Vito D'Orazio, Patrick T. Brandt, Michael Shoemate, Sayeed Salam, Latifur Khan, Jared Looper:
UTDEventData: An R package to access political event data. 1322 - Moliavko Oleksandr, Drozdovskyi Taras, Petrychenko Vitalii, Oleg Yu. Kopysov:
uJVM: Lightweight Java Virtual Machine for embedded systems. 1338 - Mikael Mortensen, Lisandro Dalcín, David E. Keyes:
mpi4py-fft: Parallel Fast Fourier Transforms with MPI for Python. 1340 - Matthieu Ancellin, Frédéric Dias:
Capytaine: a Python-based linear potential flow solver. 1341 - Franz-Sebastian Krah, Christoph Heibl:
rGUIDANCE - alignment confidence score computation in R. 1350 - Shawn Banasick:
KADE: A desktop application for Q methodology. 1360 - Rutger A. Vos, Nnadi Nnaemeka Emmanuel, John Chinyere Aguiyi:
WGS2NCBI - Toolkit for preparing genomes for submission to NCBI. 1364
Volume 4, Number 37, 2019
- Maria Florencia D. 'Andrea, Julie Celine Brodeur:
shinyssd v1.0: Species Sensitivity Distributions for Ecotoxicological Risk Assessment. 785 - David Kinkead, Deborah Brown, Peter Ellerton, Claudio Mazzola:
Reasons: A digital argument mapping library for modern browsers. 1044 - Jason Neal, Pedro Figueira:
Eniric: Extended NIR Information Content. 1053 - Aaron Carter-Enyi:
EMViz (Early Music Visualization): MATLAB runtime application. 1094 - Jon Hill:
HRDS: A Python package for hierarchical raster datasets. 1112 - Justin A. Alsing:
dlmmc: Dynamical linear model regression for atmospheric time-series analysis. 1157 - Christopher Prener, Charlie Revord:
areal: An R package for areal weighted interpolation. 1221 - Freek Stulp, Gennaro Raiola:
DmpBbo: A versatile Python/C++ library for Function Approximation, Dynamical Movement Primitives, and Black-Box Optimization. 1225 - Adam Lanman, Bryna J. Hazelton, Danny Jacobs, Matthew Kolopanis, Jonathan C. Pober, James E. Aguirre, Nithyanandan Thyagarajan:
pyuvsim: A comprehensive simulation package for radio interferometers in python. 1234 - Stefan Johann van der Walt, Arien Crellin-Quick, Joshua S. Bloom:
SkyPortal: An Astronomical Data Platform. 1247 - Mingze He, Kokulapalan Wimalanathan, Peng Liu, Carolyn J. Lawrence-Dill:
Compare Expression Profiles for Pre-defined Gene Groups with C-REx. 1255 - Casper O. da Costa-Luis:
tqdm: A Fast, Extensible Progress Meter for Python and CLI. 1277 - Nelson A. Roque, Nilam Ram:
tsfeaturex: An R Package for Automating Time Series Feature Extraction. 1279 - Philip D. Waggoner, Ryan Kennedy, Scott Clifford:
Detecting Fraud in Online Surveys by Tracing, Scoring, and Visualizing IP Addresses. 1285 - Jeff T. Gostick, Zohaib Atiq Khan, Thomas G. Tranter, Mathew D. R. Kok, Mehrez Agnaou, Mohamm Adamin Sadeghi, Rhodri Jervis:
PoreSpy: A Python Toolkit for Quantitative Analysis of Porous Media Images. 1296 - Mika Hämäläinen:
UralicNLP: An NLP Library for Uralic Languages. 1345 - Martin Viereck:
x11docker: Run GUI applications in Docker containers. 1349 - Brandon Dube:
prysm: A Python optics module. 1352 - Alison Kirkby, Fei Zhang, Jared R. Peacock, Rakib Hassan, Jingming Duan:
The MTPy software package for magnetotelluric data analysis and visualisation. 1358 - Marouen Ben Guebila:
ACHR.cu: GPU accelerated sampling of metabolic networks. 1363 - Weiqun Zhang, Ann S. Almgren, Vincent E. Beckner, John B. Bell, Johannes P. Blaschke, Cy P. Chan, Marcus Day, Brian Friesen, Kevin Gott, Daniel T. Graves, Maximilian Katz, Andrew Myers, Tan Nguyen, Andrew Nonaka, Michele Rosso, Samuel Williams, Michael Zingale:
AMReX: a framework for block-structured adaptive mesh refinement. 1370 - Vanessa V. Sochat:
WatchMe: Software for Reproducible Monitoring and Data Collection. 1388 - Michal Kuzba, Ewa Baranowska, Przemyslaw Biecek:
pyCeterisParibus: explaining Machine Learning models with Ceteris Paribus Profiles in Python. 1389 - Niamh Mac Fhionnlaoich, Alaric Taylor, Stefan Guldin:
Optimising Light Source Positioning for Even and Flux-Efficient Illumination. 1392 - Steven G. Murray, Francis J. Poulin:
hankel: A Python library for performing simple and accurate Hankel transformations. 1397 - Adam J. Batten:
Fruitbat: A Python Package for Estimating Redshifts of Fast Radio Bursts. 1399 - David Zwick:
ppiclF: A Parallel Particle-In-Cell Library in Fortran. 1400 - Øystein Sørensen:
hdme: High-Dimensional Regression with Measurement Error. 1404 - Will Handley:
anesthetic: nested sampling visualisation. 1414 - Vanessa V. Sochat:
Container Tree: Software to Model Container Filesystems, Packages, and Inheritance. 1418 - Jason Lin, Tony Kuo, Paul Horton, Hiroki Nagase:
CRED: a rapid peak caller for Chem-seq data. 1423 - Bane Sullivan, Alex Kaszynski:
PyVista: 3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK). 1450 - Noam Ross, Evan A. Eskew, Nicolas Ray:
citesdb: An R package to support analysis of CITES Trade Database shipment-level data. 1483
Volume 4, Number 38, 2019
- Peter Watkins:
diwanalr: An R data analysis package for diffusing-wave spectroscopy. 947 - Simon Barthelmé, David Tschumperlé:
imager: an R package for image processing based on CImg. 1012 - Nicolas Pröllochs, Stefan Feuerriegel:
ReinforcementLearning: A Package to Perform Model-Free Reinforcement Learning in R. 1087 - Richard Collins, Djeylan Aktas:
QComms QKD Software Toolkit. 1119 - Martijn Froeling:
QMRTools: a Mathematica toolbox for quantitative MRI analysis. 1204 - Ellert van der Velden:
Model dispersion with PRISM; an alternative to MCMC for rapid analysis of models. 1229 - Manuela Salvucci, Jochen H. M. Prehn:
HCP: A Matlab package to create beautiful heatmaps with richly annotated covariates. 1291 - Sebastian Mitusch, Simon W. Funke, Jørgen S. Dokken:
dolfin-adjoint 2018.1: automated adjoints for FEniCS and Firedrake. 1292 - Conn O'Rourke, Benjamin J. Morgan:
crystal-torture: A crystal tortuosity module. 1306 - Grant Jenks:
Python Sorted Containers. 1330 - Tobias Knopp, Martin Möddel, Florian Griese, Franziska Werner, Patryk Szwargulski, Nadine Gdaniec, Marija Boberg:
MPIFiles.jl: A Julia Package for Magnetic Particle Imaging Files. 1331 - Kristian Lundby Gjerde:
corporaexplorer: An R package for dynamic exploration of text collections. 1342 - Romain Azaïs, Guillaume Cerutti, Didier Gemmerlé, Florian Ingels:
treex: a Python package for manipulating rooted trees. 1351 - Nicolas Cellier, Christian Ruyer-Quil:
scikit-finite-diff, a new tool for PDE solving. 1356 - Jan Drugowitsch:
VBLinLogit: Variational Bayesian linear and logistic regression. 1359 - Daniel W. Davies, Keith T. Butler, Adam J. Jackson, Jonathan Skelton, Kazuki Morita, Aron Walsh:
SMACT: Semiconducting Materials by Analogy and Chemical Theory. 1361 - Daniela Huppenkothen, Matteo Bachetti, Abigail Stevens, Simone Migliari, Paul Balm, Omar Hammad, Usman Mahmood Khan, Himanshu Mishra, Haroon Rashid, Swapnil Sharma, Evandro Martinez Ribeiro, Ricardo Vallés Blanco:
stingray: A modern Python library for spectral timing. 1393 - Yury Shevchenko:
Multi-attribute task builder. 1409 - Louis Moresi, Ben Mather:
Stripy: A Python module for (constrained) triangulation in Cartesian coordinates and on a sphere. 1410 - Daniel Lüdecke, Philip D. Waggoner, Dominique Makowski:
insight: A Unified Interface to Access Information from Model Objects in R. 1412 - Paul Miles:
pymcmcstat: A Python Package for Bayesian Inference Using Delayed Rejection Adaptive Metropolis. 1417 - Thomas Geijtenbeek:
SCONE: Open Source Software for Predictive Simulation of Biological Motion. 1421 - Michael Mommert, Michael S. P. Kelley, Miguel de Val-Borro, Jian-Yang Li, Giannina Guzman, Brigitta M. Sipocz, Josef Durech, Mikael Granvik, William S. Noble, Nick Moskovitz, Antti Penttilä, Nalin Samarasinha:
sbpy: A Python module for small-body planetary astronomy. 1426 - Frederick Boehm, Brian S. Yandell, Karl W. Broman:
qtl2pleio: Testing pleiotropy vs. separate QTL in multiparental populations. 1435 - Schuyler Smith:
phylosmith: an R-package for reproducible and efficient microbiome analysis with phyloseq-objects. 1442 - Kamil Romaszko, Magda Tatarynowicz, Mateusz Urbanski, Przemyslaw Biecek:
modelDown: automated website generator with interpretable documentation for predictive machine learning models. 1444 - Kevin Schneider, Timo Mühlhaus:
FSharpGephiStreamer: An idiomatic bridge between F# and network visualization. 1445 - Benjamin Montgomery, Paul Nakroshis:
labjack-controller: Robust and Easy Data Collection with Labjack T-Series DAQs in Python. 1448 - Bane Sullivan, Whitney Trainor-Guitton:
PVGeo: an open-source Python package for geoscientific visualization in VTK and ParaView. 1451 - Michael E. DeWitt Jr., Mona Ahmadiani, Adam S. Hyde:
tidyqwi: A Tidy Approach to Accessing The US Census Bureau's Quarterly Workforce Indicators. 1462 - Jihed Chouaref, Mattijs Bliek, Marc Galland:
A reproducible Snakemake pipeline to analyse Illumina paired-end data from ChiP-Seq experiments. 1465 - Marshall Ward:
f90nml - A Python module for Fortran namelists. 1474 - Christoph Haarburger, Justus Schock, Michael Baumgartner, Oliver Rippel, Dorit Merhof:
Delira: A High-Level Framework for Deep Learning in Medical Image Analysis. 1488
Volume 4, Number 39, July 2019
- Oliver Tomic, Thomas Graff, Kristian Hovde Liland, Tormod Næs:
hoggorm: a python library for explorative multivariate statistics. 980 - Florian Aymanns, Markus Rudin, Horea-Ioan Ioanas:
COSplay: Contrast Optimized Stimulation Player. 1171 - Michael Conlon, Andrew Woods, Graham Triggs, Ralph O'Flinn, Muhammad Javed, Jim Blake, Benjamin Gross, Qazi Ahmad, Sabih Ali, Martin Barber, Don Elsborg, Kitio Fofack, Christian Hauschke, Violeta Ilik, Huda J. Khan, Ted Lawless, Jacob Levernier, Brian Lowe, Jose Martin, Steve McKay, Simon Porter, Tatiana Walther, Marijane White, Stefan Wolff, Rebecca Younes:
VIVO: a system for research discovery. 1182 - Mathieu Besançon:
A Julia package for bilevel optimization problems. 1278 - Wojciech Nawalaniec:
Basicsums: A Python package for computing structural sums and the effective conductivity of random composites. 1327 - Zhang Ning:
rdbsp: An Open Source Rock Dynamic Behavior Simulation Program. 1328 - Erik Wik, Hampus Olin, Caitlin Haughey, Lisa Klasson, Jacques Dainat:
GUESSmyLT: Software to guess the RNA-Seq library type of paired and single end read files. 1344 - Emerson V. Castelani, Ronaldo Lopes, Wesley V. I. Shirabayashi, Francisco Nogueira Calmon Sobral:
RAFF.jl: Robust Algebraic Fitting Function in Julia. 1385 - Jean-Michel Camadro, Pierre Poulain:
AutoClassWrapper: a Python wrapper for AutoClass C classification. 1390 - Ibrahim Tanyalcin:
Lexicon-Mono-Seq, DOM Text Based Async MSA Viewer. 1407 - Randy W. Heiland, Daniel Mishler, Tyler Zhang, Eric Bower, Paul Macklin:
xml2jupyter: Mapping parameters between XML and Jupyter widgets. 1408 - Sanskriti Sharma, Hernan Gelaf-Romer, Travis Kessler, John Hunter Mack:
ECabc: A feature tuning program focused on Artificial Neural Network hyperparameters. 1420 - George G. Vega Yon, Paul Marjoram:
fmcmc: A friendly MCMC framework. 1427 - Dieter Werthmüller, Wim A. Mulder, Evert C. Slob:
emg3d: A multigrid solver for 3D electromagnetic diffusion. 1463 - Robert A. Briers:
cde - R package to retrieve data from the Environment Agency Catchment Data Explorer site. 1473 - Saad Khan, Libusha Kelly:
Fireworks: Reproducible Machine Learning and Preprocessing with PyTorch. 1478 - Katrine Kirkeby, Maria Knudsen, Ninna Vihrs:
tcherry: Learning the structure of tcherry trees. 1480 - Martin Khannouz, Bo Li, Tristan Glatard:
OrpailleCC: a Library for Data Stream Analysis on Embedded Systems. 1485 - George G. Vega Yon, Paul Marjoram:
slurmR: A lightweight wrapper for HPC with Slurm. 1493 - Sean Law:
STUMPY: A Powerful and Scalable Python Library for Time Series Data Mining. 1504 - Amalan Mahendran, Pushpakanthie Wijekoon:
fitODBOD: An R Package to Model Binomial Outcome Data using Binomial Mixture and Alternate Binomial Distributions. 1505 - Mattia Almansi, Renske Gelderloos, Thomas W. N. Haine, Atousa Saberi, Ali Siddiqui:
OceanSpy: A Python package to facilitate ocean model data analysis and visualization. 1506 - Xavier Olive:
traffic, a toolbox for processing and analysing air traffic data. 1518 - Adam Diehl, Alan P. Boyle:
CGIMP: Real-time exploration and covariate projection for self-organizing map datasets. 1520 - Tristan Salles, Patrice Rey:
bioLEC: A Python package to measure Landscape Elevational Connectivity. 1530 - Adi Singh, Sebastian Dengler, Christopher Lang:
Tools for Prototyping with 3D Ultrasonics in ROS. 1531 - Ben Mather, Robert Delhaye:
PyCurious: A Python module for computing the Curie depth from the magnetic anomaly. 1544 - Xin Huang, Li Jin, Yungang He:
SeleDiff: A fast and scalable tool for estimating and testing selection differences between populations. 1545 - Md. Manjurul Hussain, Ishtiak Mahmud:
pyMannKendall: a python package for non parametric Mann Kendall family of trend tests. 1556 - Yuan Tang, Wenxuan Li:
lfda: Local Fisher Discriminant Analysis in R. 1572 - Sil C. van de Leemput, Jonas Teuwen, Bram van Ginneken, Rashindra Manniesing:
MemCNN: A Python/PyTorch package for creating memory-efficient invertible neural networks. 1576 - Nikos Pitsianis, Dimitris Floros, Alexandros-Stavros Iliopoulos, Xiaobai Sun:
SG-t-SNE-Π: Swift Neighbor Embedding of Sparse Stochastic Graphs. 1577
Volume 4, Number 40, August 2019
- Marion Legrand, Cédric Briand, Timothée Besse:
stacomiR : a common tool for monitoring fish migration. 791 - Pankaj K. Mishra:
NodeLab: A MATLAB package for meshfree node-generation and adaptive refinement. 1173 - Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Quinten McNamara, Krista Destasio, Jean-Baptiste Poline, Dmitry Petrov, Valérie Hayot-Sasson, Dylan Nielson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Elizabeth Dupre, Adina S. Wagner, Lee S. Tirrell, Mainak Jas, Michael Hanke, Russell A. Poldrack, Oscar Esteban, Stefan Appelhoff, Chris Holdgraf, Isla Staden, Bertrand Thirion, Dave F. Kleinschmidt, John Lee, Matteo di Castello, Michael Notter, Ross Blair:
PyBIDS: Python tools for BIDS datasets. 1294 - Cameron Davidson-Pilon:
lifelines: survival analysis in Python. 1317 - Jacob Lustig-Yaeger, Tyler Robinson, Giada Arney:
coronagraph: Telescope Noise Modeling for Exoplanets in Python. 1387 - Mathieu Fauvernier, Laurent Remontet, Zoé Uhry, Nadine Bossard, Laurent Roche:
survPen: an R package for hazard and excess hazard modelling with multidimensional penalized splines. 1434 - Kenneth Hunter Wapman, Daniel B. Larremore:
webweb: a tool for creating, displaying, and sharing interactive network visualizations on the web. 1458 - Ryan Stewart:
FRIDGe: Fast Reactor Input Deck Generator. 1486 - Drozdovskyi Taras, Moliavko Oleksandr:
mTower: Trusted Execution Environment for MCU-based devices. 1494 - Philipp Matthias Schäfer:
OnToCode: Template-based code-generation from ontologies. 1513 - Adina S. Wagner, Yaroslav O. Halchenko, Michael Hanke:
multimatch-gaze: The MultiMatch algorithm for gaze path comparison in Python. 1525 - Christopher John, Denis Proshlyakov:
KinESim: Pre-equilibrium kinetic simulation of electrochemical reactions. 1532 - Weihong Tay, Erwin Tantoso, Frank Eisenhaber, Wing-Cheong Wong:
Translational Informatics Management System (TIMS): Towards OMICS based clinical data management for long term curation of clinical studies. 1533 - Dominique Makowski, Mattan S. Ben-Shachar, Daniel Lüdecke:
bayestestR: Describing Effects and their Uncertainty, Existence and Significance within the Bayesian Framework. 1541 - Vanessa V. Sochat:
Singularity Compose: Orchestration for Singularity Instances. 1578 - Daniel Vidali Fryer, Hien D. Nguyen, Pierre Orban:
studentlife: Tidy Handling and Navigation of a Valuable Mobile-Health Dataset. 1587 - Urminder Singh, Kushal Shah, Suman Dhar, Vinod Kumar Singh, Annangarachari Krishnamachari:
ORIS: An interactive software tool for prediction of replication origin in prokaryotic genomes. 1589 - Ole Christian Eidheim:
Simple-Web-Server: a fast and flexible HTTP/1.1 C++ client and server library. 1592 - Benjamin Szubert, Ignat Drozdov:
ivis: dimensionality reduction in very large datasets using Siamese Networks. 1596 - Nick Golding:
greta: simple and scalable statistical modelling in R. 1601 - Daniel Nüst, Matthias Hinz:
containerit: Generating Dockerfiles for reproducible research with R. 1603 - Nina Bindel, Johannes Braun, Luca Gladiator, Tobias Stöckert, Johannes Wirth:
X.509-Compliant Hybrid Certificates for the Post-Quantum Transition. 1606 - Mathias Kuhring, Mikko Nieminen, Jennifer Kirwan, Dieter Beule, Manuel Holtgrewe:
AltamISA: a Python API for ISA-Tab files. 1610 - Kolja Glogowski, Monica G. Bobra, Nitin Choudhary, Arthur Amezcua, Stuart Mumford:
drms: A Python package for accessing HMI and AIA data. 1614 - Matthew Flamm:
rtdpy: A python package for residence time distributions. 1621 - Shixiang Wang, Xuesong Liu:
The UCSCXenaTools R package: a toolkit for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq. 1627 - Matthew A. Petroff:
Pannellum: a lightweight web-based panorama viewer. 1628 - Allison Stettler, Christopher John, Yegor Proshlyakov, Denis Proshlyakov:
G3F: Global, Multidimensional Spectral Regression Analysis. 1629
Volume 4, Number 41, September 2019
- Dario Solari, Andrea Sciandra, Livio Finos:
TextWiller: Collection of functions for text mining, specially devoted to the Italian language. 1256 - James Kent, Peer Herholz:
NiBetaSeries: task related correlations in fMRI. 1295 - Utkarsh Bhardwaj, Harsh Hemani, Manoj Warrier, Nancy Semwal, Kawsar Ali, Ashok Arya:
CSaransh : Software Suite to Study Molecular Dynamics Simulations of Collision Cascades. 1461 - Abhishektha Boppana, Allison P. Anderson:
DynaMo: Dynamic Body Shape and Motion Capture with Intel RealSense Cameras. 1466 - Maik Riechert, David Meyer:
WRF-CMake: integrating CMake support into the Advanced Research WRF (ARW) modelling system. 1468 - Ruth Angus, Timothy D. Morton, Daniel Foreman-Mackey:
stardate: Combining dating methods for better stellar ages. 1469 - Sayan Putatunda, Dayananda Ubrangala, Kiran Rama, Ravi Prasad Kondapalli:
SmartEDA: An R Package for Automated Exploratory Data Analysis. 1509 - Martí Bosch:
swisslandstats-geopy: Python tools for the land statistics datasets from the Swiss Federal Statistical Office. 1511 - Henrik Nicolay Topnes Finsberg:
pulse: A python package based on FEniCS for solving problems in cardiac mechanics. 1539 - Maxime Borry:
Sourcepredict: Prediction of metagenomic sample sources using dimension reduction followed by machine learning classification. 1540 - Shana Scogin, Sarah Petersen, Jeffrey Harden, Bruce A. Desmarais:
modeLLtest: An R Package for Unbiased Model Comparison using Cross Validation. 1542 - Phillip Mestas, Parker Clayton, Kyle E. Niemeyer:
pyMARS: automatically reducing chemical kinetic models in Python. 1543 - Holger Teichgraeber, Lucas Kuepper, Adam Brandt:
TimeSeriesClustering: An extensible framework in Julia. 1573 - Lars Børty, Rasmus Froberg Brøndum, Martin Bøgsted:
ccostr: An R package for estimating mean costs with censored data. 1593 - Brian Ferrari:
AutoGAMESS: A Python package for automation of GAMESS(US) Raman calculations. 1612 - Richard Teague:
GoFish: Fishing for Line Observations in Protoplanetary Disks. 1632 - Steve Ruggiero, Ashlee N. Ford Versypt:
SMBLtoODEpy: A software program for converting SBML models into ODE models in Python. 1643 - Keming Zhang, Joshua S. Bloom:
deepCR: Cosmic Ray Rejection with Deep Learning. 1651 - Thomas R. Etherington, Osayande P. Omondiagbe:
virtualNicheR: generating virtual fundamental and realised niches for use in virtual ecology experiments. 1661 - Fabian-Robert Stöter, Stefan Uhlich, Antoine Liutkus, Yuki Mitsufuji:
Open-Unmix - A Reference Implementation for Music Source Separation. 1667 - Thomas Donoghue:
LISC: A Python Package for Scientific Literature Collection and Analysis. 1674 - Sohrab Towfighi:
pySRURGS - a python package for symbolic regression by uniform random global search. 1675 - Toni Giorgino:
Computing diffusion coefficients in macromolecular simulations: the Diffusion Coefficient Tool for VMD. 1698 - Jonathan Kaplan, Alessandra Bonfanti, Alexandre Kabla:
RHEOS.jl - A Julia Package for Rheology Data Analysis. 1700 - Nicholas A. Nadeau:
Pybotics: Python Toolbox for Robotics. 1738
Volume 4, Number 42, October 2019
- Sébastien Li-Thiao-Té:
Lepton: An automaton for Literate Executable Papers. 1005 - Jacob Shermeyer:
Comet Time Series Visualizer: CometTS. 1047 - Hendrik van Veen, Nathaniel Saul, David Eargle, Sam Mangham:
Kepler Mapper: A flexible Python implementation of the Mapper algorithm. 1315 - Jed Simson:
LGP: A robust Linear Genetic Programming implementation on the JVM using Kotlin. 1337 - Ulf Aslak, Benjamin F. Maier:
Netwulf: Interactive visualization of networks in Python. 1425 - Ali Mostafa Anwar:
BCAWT: Automated tool for codon usage bias analysis for molecular evolution. 1500 - Álvaro López García:
DEEPaaS API: a REST API for Machine Learning and Deep Learning models. 1517 - Bryan M. Li, Alexander I. Cowen-Rivers, Piotr Kozakowski, David Tao, Siddhartha Kamalakara, Nitarshan Rajkumar, Hariharan Sezhiyan, Sicong Huang, Aidan N. Gomez:
RL: Generic reinforcement learning codebase in TensorFlow. 1524 - Danny C. Price, J. Emilio Enriquez, Yuhong Chen, Mark Siebert:
Blimpy: Breakthrough Listen I/O Methods for Python. 1554 - Jonas Moss, Martin Tveten:
kdensity: An R package for kernel density estimation with parametric starts and asymmetric kernels. 1566 - Albert Navarro, Jonas Eschle:
phasespace: n-body phase space generation in Python. 1570 - Ali R. Vahdati:
Agents.jl: agent-based modeling framework in Julia. 1611 - Raman Goyal, Muhao Chen, Manoranjan Majji, Robert E. Skelton:
MOTES: Modeling of Tensegrity Structures. 1613 - Felix A. Heilmeyer, Tonio Ball:
neurone_loader: A Python module for loading EEG data recorded with Bittium NeurOne. 1626 - Jorge Casas, Chandramouli Chandrasekaran:
openEyeTrack - A high speed multi-threaded eye tracker for head-fixed applications. 1631 - Marek Borowiec:
Spruceup: fast and flexible identification, visualization, and removal of outliers from large multiple sequence alignments. 1635 - Corey Brummel-Smith, Greg Bryan, Iryna Butsky, Lauren Corlies, Andrew Emerick, John Forbes, Yusuke Fujimoto, Nathan J. Goldbaum, Philipp Grete, Cameron Hummels, Ji-hoon Kim, Daegene Koh, Miao Li, Yuan Li, Xinyu Li, Brian W. O'Shea, Molly Peeples, John Regan, Munier Salem, Wolfram Schmidt, Christine Simpson, Britton Smith, Jason Tumlinson, Matthew J. Turk, John H. Wise, Tom Abel, James Bordner, Renyue Cen, David Collins, Brian Crosby, Philipp V. F. Edelmann, Oliver Hahn, Robert Harkness, Elizabeth Harper-Clark, Shuo Kong, Alexei G. Kritsuk, Michael Kuhlen, James Larrue, Eve Lee, Greg Meece, Michael L. Norman, Jeffrey S. Oishi, Pascal Paschos, Carolyn Peruta, Alex Razoumov, Daniel R. Reynolds, Devin Silvia, Samuel W. Skillman, Stephen Skory, Geoffrey So, Elizabeth J. Tasker, Rick Wagner, Peng Wang, Hao Xu, Fen Zhao:
ENZO: An Adaptive Mesh Refinement Code for Astrophysics (Version 2.6). 1636 - Zsolt Elter, Aron Cserkaszky, Sophie Grape:
feign: a Python package to estimate geometric efficiency in passive gamma spectroscopy measurements of nuclear fuel. 1650 - Paul-Christian Bürkner:
thurstonianIRT: Thurstonian IRT Models in R. 1662 - Mads Lindskou:
molic: An R package for multivariate outlier detection in contingency tables. 1665 - Leo C. Stein:
qnm: A Python package for calculating Kerr quasinormal modes, separation constants, and spherical-spheroidal mixing coefficients. 1683 - Kelly Kochanski, Gian-Carlo Defazio, Eric Green, Richard Barnes, Carlos Downie, Adam Rubin, Barry Rountree:
Rescal-snow: Simulating snow dunes with cellular automata. 1699 - Sindre Olufsen:
AXITOM: A Python package for reconstruction of axisymmetric tomograms acquired by a conical beam. 1704 - Pik-Mai Hui, Kai-Cheng Yang, Christopher Torres-Lugo, Zachary Monroe, Marc McCarty, Benjamin Serrette, Valentin Pentchev, Filippo Menczer:
BotSlayer: real-time detection of bot amplification on Twitter. 1706 - Krishna Naidoo:
MiSTree: a Python package for constructing and analysing Minimum Spanning Trees. 1721 - Shana Scogin, Johannes Karreth, Andreas Beger, Rob Williams:
BayesPostEst: An R Package to Generate Postestimation Quantities for Bayesian MCMC Estimation. 1722 - Keerthi Sravan Ravi, Sairam Geethanath, John Thomas Vaughan:
PyPulseq: A Python Package for MRI Pulse Sequence Design. 1725 - Benjamin W. L. Margolis, Kenneth R. Lyons:
ndsplines: A Python Library for Tensor-Product B-Splines of Arbitrary Dimension. 1745 - Shalin Shah:
GKNAP: A Java and C++ package for solving the multidimensional knapsack problem. 1756 - Sebastian Müller:
pentapy: A Python toolbox for pentadiagonal linear systems. 1759 - Mikkel Meyer Andersen, Søren Højsgaard:
Ryacas: A computer algebra system in R. 1763 - Ottavia Epifania, Pasquale Anselmi, Egidio Robusto:
DscoreApp: An user-friendly web application for computing the Implicit Association Test D-score. 1764 - Toni Giorgino:
PYCV: a PLUMED 2 Module Enabling the Rapid Prototyping of Collective Variables in Python. 1773 - Jeffrey S. Hazboun, Joseph D. Romano, Tristan L. Smith:
Hasasia: A Python package for Pulsar Timing Array Sensitivity Curves. 1775 - Katherine R. Barnhart, Eric W. H. Hutton, Gregory E. Tucker:
umami: A Python package for Earth surface dynamics objective function construction. 1776 - Robert Sare, George E. Hilley:
pymccrgb: Color- and curvature-based classification of multispectral point clouds in Python. 1777 - Michael Wayne Kearney:
rtweet: Collecting and analyzing Twitter data. 1829
Volume 4, Number 43, November 2019
- Sambit Dash:
PDFIO: PDF Reader Library for native Julia. 1453 - Michael Tesch:
cppduals: a nestable vectorized templated dual number library for C++11. 1487 - Maciej J. Danko:
hopit: An R Package for Analysis of Reporting Behavior Using Generalized Ordered Probit Models. 1508 - Matthew L. Hale:
Eyestream: An Open WebSocket-based Middleware for Serializing and Streaming Eye Tracker Event Data from Gazepoint GP3 HD Research Hardware. 1620 - Gehua Tong, Sairam Geethanath, Marina Manso Jimeno, Enlin Qian, Keerthi Sravan Ravi, Nishika Girish, John Thomas Vaughan:
Virtual Scanner: MRI on a Browser. 1637 - Jared Noynaert:
PressureDrop.jl: Pressure traverses and gas lift analysis for oil & gas wells. 1642 - Kristian Agasøster Haaga:
UncertainData.jl: a Julia package for working with measurements and datasets with uncertainties. 1666 - Hadley Wickham, Mara Averick, Jennifer Bryan, Winston Chang, Lucy D'Agostino McGowan, Romain François, Garrett Grolemund, Alex Hayes, Lionel Henry, Jim Hester, Max Kuhn, Thomas Lin Pedersen, Evan Miller, Stephan Bache, Kirill Müller, Jeroen Ooms, David Robinson, Dana Paige Seidel, Vitalie Spinu, Kohske Takahashi, Davis Vaughan, Claus O. Wilke, Kara H. Woo, Hiroaki Yutani:
Welcome to the Tidyverse. 1686 - Mahesh Prasad, Napat Vajragupta, Alexander Hartmaier:
Kanapy: A Python package for generating complex synthetic polycrystalline microstructures. 1732 - Junbin Zhao:
FluxCalR: a R package for calculating CO~2~ and CH~4~ fluxes from static chambers. 1751 - Duoming Fan, Andrew Nonaka, Ann S. Almgren, Donald E. Willcox, Alice Harpole, Michael Zingale:
MAESTROeX: A Massively Parallel Low Mach Number Astrophysical Solver. 1757 - Matthew Czech, Shyamal Patel:
GaitPy: An Open-Source Python Package for Gait Analysis Using an Accelerometer on the Lower Back. 1778 - Hubert Baniecki, Przemyslaw Biecek:
modelStudio: Interactive Studio with Explanations for ML Predictive Models. 1798 - Martin Fleischmann:
momepy: Urban Morphology Measuring Toolkit. 1807 - Kai Wenger, Janis Becker:
memochange: An R package for estimation procedures and tests for persistent time series. 1820 - Sarath Menon, Grisell Leines, Jutta Rogal:
pyscal: A python module for structural analysis of atomic environments. 1824 - Lester O. Hedges, Antonia S. J. S. Mey, Charles A. Laughton, Francesco L. Gervasio, Adrian J. Mulholland, Christopher J. Woods, Julien Michel:
BioSimSpace: An interoperable Python framework for biomolecular simulation. 1831 - Vikram Baliga, Shreeram Senthivasan:
workloopR: Analysis of work loops and other data from muscle physiology experiments in R. 1856 - Hugo Gruson, Thomas White, Rafael Maia:
lightr: import spectral data and metadata in R. 1857 - Daniel Foreman-Mackey, Will Farr, Manodeep Sinha, Anne M. Archibald, David W. Hogg, Jeremy Sanders, Joe Zuntz, Peter H. Williams, Andrew R. J. Nelson, Miguel de Val-Borro, Tobias Erhardt, Ilya Pashchenko, Oriol Abril Pla:
emcee v3: A Python ensemble sampling toolkit for affine-invariant MCMC. 1864 - Nicholas A. Potter:
rnassqs: An R package to access agricultural data via the USDA National Agricultural Statistics Service (USDA-NASS) 'Quick Stats' API. 1880 - Leah Wasser, Maxwell B. Joseph, Joe McGlinchy, Jenny Palomino, Nathan Korinek, Chris Holdgraf, Tim Head:
EarthPy: A Python package that makes it easier to explore and plot raster and vector data using open source Python tools. 1886 - David Maciver, Zac Hatfield-Dodds:
Hypothesis: A new approach to property-based testing. 1891 - Clemens Schmid, Dirk Seidensticker, Martin Hinz:
c14bazAAR: An R package for downloading and preparing C14 dates from different source databases. 1914
Volume 4, Number 44, December 2019
- Stefanie Lueck, Dimitar Douchkov:
"Blaster" - a graphical user interface for common sequence analysis tools. 1411 - Yiorgos Christakis, Nikhil Mahadevan, Shyamal Patel:
SleepPy: A python package for sleep analysis from accelerometer data. 1663 - Leonardo Rydin Gorjão, Francisco Meirinhos:
kramersmoyal: Kramers-Moyal coefficients for stochastic processes. 1693 - Brajesh Gupt, Josh A. Izaac, Nicolás Quesada:
The Walrus: a library for the calculation of hafnians, Hermite polynomials and Gaussian boson sampling. 1705 - A. Sean Pue:
Graph Transliterator: A graph-based transliteration tool. 1717 - Joel C. Miller, Tony Ting:
EoN (Epidemics on Networks): a fast, flexible Python package for simulation, analytic approximation, and analysis of epidemics on networks. 1731 - Mayura Patwardhan, Craig Wenger, Eric S. Davis, Douglas H. Phanstiel:
Bedtoolsr: An R package for genomic data analysis and manipulation. 1742 - Garrett Weaver, Juan Pablo Lewinger:
xrnet: Hierarchical Regularized Regression to Incorporate External Data. 1761 - Lee S. Katz, Taylor Griswold, Shatavia Morrison, Jason Caravas, Shaokang Zhang, Henk C. den Bakker, Xiangyu Deng, Heather Carleton:
Mashtree: a rapid comparison of whole genome sequence files. 1762 - Jessica Burnett, Lyndsie Wszola, Gabriela Palomo-Muñoz:
bbsAssistant: An R package for downloading and handling data and information from the North American Breeding Bird Survey. 1768 - Jorge Cimentada:
perccalc: An R package for estimating percentiles from categorical variables. 1796 - Pratik S. Sachdeva, Jesse Livezey, Andrew J. Tritt, Kristofer E. Bouchard:
PyUoI: The Union of Intersections Framework in Python. 1799 - Tobin A. Driscoll:
ComplexRegions.jl: A Julia package for regions in the complex plane. 1811 - Marcello Seri, Ta-Chu Kao:
OwlDE: making ODEs first-class Owl citizens. 1812 - Pascal Audet, Colin Thomson, Michael Bostock, Tom Eulenfeld:
Telewavesim: Python software for teleseismic body wave modeling. 1818 - Nicolas Frerebeau:
tabula: An R Package for Analysis, Seriation, and Visualization of Archaeological Count Data. 1821 - Amit Min, Erika Deoudes, Marielle Bond, Eric S. Davis, Douglas H. Phanstiel:
CoralP: Flexible visualization of the human phosphatome. 1837 - Georgios Detorakis, Andrew Burton:
GAIM: A C++ library for Genetic Algorithms and Island Models. 1839 - Rami Yaari, Itai Dattner:
simode: R Package for Statistical Inference of Ordinary Differential Equations using Separable Integral-Matching. 1850 - Jonas Moss:
univariateML: An R package for maximum likelihood estimation of univariate densities. 1863 - Michael Green, Xiaobo Chen:
libRL: A Python library for the characterization of microwave absorption. 1868 - Todd C. Pataky, Hanaa Naouma, Cyril J. Donnelly:
mwarp1d: Manual one-dimensional data warping in Python and PyQt. 1870 - Britton Smith, Meagan Lang:
ytree: A Python package for analyzing merger trees. 1881 - Daniel Mentiplay:
Plonk: Smoothed particle hydrodynamics analysis and visualization with Python. 1884 - Alfonso del Carre, Arturo Muñoz-Simón, Norberto Goizueta, Rafael Palacios:
SHARPy: A dynamic aeroelastic simulation toolbox for very flexible aircraft and wind turbines. 1885 - Tomas Beuzen:
pybeach: A Python package for extracting the location of dune toes on beach profile transects. 1890 - Stefan Appelhoff, Matthew Sanderson, Teon Brooks, Marijn van Vliet, Romain Quentin, Chris Holdgraf, Maximilien Chaumon, Ezequiel Mikulan, Kambiz Tavabi, Richard Höchenberger, Dominik Welke, Clemens Brunner, Alexander Rockhill, Eric Larson, Alexandre Gramfort, Mainak Jas:
MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis. 1896 - Michel Lang, Martin Binder, Jakob Richter, Patrick Schratz, Florian Pfisterer, Stefan Coors, Quay Au, Giuseppe Casalicchio, Lars Kotthoff, Bernd Bischl:
mlr3: A modern object-oriented machine learning framework in R. 1903 - Ryan Alcantara:
Dryft: A Python and MATLAB package to correct drifting ground reaction force signals during treadmill running. 1910 - Katharine Crawford, Jesse D. Bloom:
alignparse: A Python package for parsing complex features from high-throughput long-read sequencing. 1915 - Malcolm Morgan, Marcus Young, Robin Lovelace, Layik Hama:
OpenTripPlanner for R. 1926 - Dhanesh Krishnarao:
whampy: Python Package to Interact with, Visualize, and Analyze the Wisconsin H-Alpha Mapper - Sky Survey. 1940
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