default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDIEEE/ACM Transactions on Computational Biology and Bioinformatics, Volume 15
Volume 15, Number 1, January - February 2018
- Yanbo Wang
, Weikang Qian, Bo Yuan:
A Graphical Model of Smoking-Induced Global Instability in Lung Cancer. 1-14 - Jesper Jansson, Ramesh Rajaby, Chuanqi Shen, Wing-Kin Sung:
Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus Tree. 15-26 - Renu Vyas, Sanket Bapat, Purva Goel, Muthukumarasamy Karthikeyan, Sanjeev S. Tambe, Bhaskar D. Kulkarni:
Application of Genetic Programming (GP) Formalism for Building Disease Predictive Models from Protein-Protein Interactions (PPI) Data. 27-37 - Bin Hu, Xiaowei Li, Shuting Sun, Martyn Ratcliffe:
Attention Recognition in EEG-Based Affective Learning Research Using CFS+KNN Algorithm. 38-45 - Anton V. Ushakov, Xenia Klimentova, Igor Vasilyev:
Bi-level and Bi-objective p-Median Type Problems for Integrative Clustering: Application to Analysis of Cancer Gene-Expression and Drug-Response Data. 46-59 - Narayanan C. Viswanath:
Calculating the Expected Time to Eradicate HIV-1 Using a Markov Chain. 60-67 - Alireza Karbalayghareh, Ulisses M. Braga-Neto, Jianping Hua, Edward Russell Dougherty:
Classification of State Trajectories in Gene Regulatory Networks. 68-82 - Tom Hartmann, An-Chiang Chu, Martin Middendorf, Matthias Bernt:
Combinatorics of Tandem Duplication Random Loss Mutations on Circular Genomes. 83-95 - Ademir Hujdurovic, Ursa Kacar, Martin Milanic, Bernard Ries, Alexandru I. Tomescu:
Complexity and Algorithms for Finding a Perfect Phylogeny from Mixed Tumor Samples. 96-108 - Wei Zhang, Jia Xu, Yuanyuan Li, Xiufen Zou:
Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information. 109-116 - Cinzia Pizzi, Mattia Ornamenti, Simone Spangaro, Simona E. Rombo, Laxmi Parida:
Efficient Algorithms for Sequence Analysis with Entropic Profiles. 117-128 - Hyunjin Kim, Sang-Min Choi, Sanghyun Park:
GSEH: A Novel Approach to Select Prostate Cancer-Associated Genes Using Gene Expression Heterogeneity. 129-146 - Jian Zhang, Haiting Chai, Bo Gao, Guifu Yang, Zhiqiang Ma:
HEMEsPred: Structure-Based Ligand-Specific Heme Binding Residues Prediction by Using Fast-Adaptive Ensemble Learning Scheme. 147-156 - Kamal Taha:
Inferring the Functions of Proteins from the Interrelationships between Functional Categories. 157-167 - Guillermo Leale, Ariel E. Bayá, Diego H. Milone, Pablo M. Granitto, Georgina Stegmayer:
Inferring Unknown Biological Function by Integration of GO Annotations and Gene Expression Data. 168-180 - Nikolaos-Kosmas Chlis, Ekaterini S. Bei, Michalis E. Zervakis:
Introducing a Stable Bootstrap Validation Framework for Reliable Genomic Signature Extraction. 181-190 - Eddie Y. T. Ma, Sujeevan Ratnasingham, Stefan C. Kremer:
Machine Learned Replacement of N-Labels for Basecalled Sequences in DNA Barcoding. 191-204 - Laura Jetten, Leo van Iersel:
Nonbinary Tree-Based Phylogenetic Networks. 205-217 - Daniel N. Mohsenizadeh, Roozbeh Dehghannasiri, Edward R. Dougherty:
Optimal Objective-Based Experimental Design for Uncertain Dynamical Gene Networks with Experimental Error. 218-230 - Behnam Behinaein, Karen Rudie, Waheed Sangrar:
Petri Net Siphon Analysis and Graph Theoretic Measures for Identifying Combination Therapies in Cancer. 231-243 - Shujaat Khan, Imran Naseem, Roberto Togneri, Mohammed Bennamoun:
RAFP-Pred: Robust Prediction of Antifreeze Proteins Using Localized Analysis of n-Peptide Compositions. 244-250 - Roman Czapla:
Random Sets of Stadiums in Square and Collective Behavior of Bacteria. 251-256 - Vinicius R. P. Borges, Maria Cristina Ferreira de Oliveira, Thaís Garcia Silva, Armando Augusto Henriques Vieira, Bernd Hamann:
Region Growing for Segmenting Green Microalgae Images. 257-270 - M. Syed Ali, Nallappan Gunasekaran, Choon Ki Ahn, Peng Shi:
Sampled-Data Stabilization for Fuzzy Genetic Regulatory Networks with Leakage Delays. 271-285 - Chendra Hadi Suryanto, Hiroto Saigo, Kazuhiro Fukui:
Structural Class Classification of 3D Protein Structure Based on Multi-View 2D Images. 286-299 - Gerd Anders, Ulrich Hassiepen, Stephan Theisgen, Stephan Heymann, Lionel Muller, Tania Panigada, Daniel Huster, Sergey A. Samsonov:
The Intrinsic Pepsin Resistance of Interleukin-8 Can Be Explained from a Combined Bioinformatical and Experimental Approach. 300-308 - Jiawei Luo, Wei Huang, Buwen Cao:
A Novel Approach to Identify the miRNA-mRNA Causal Regulatory Modules in Cancer. 309-315 - Feng Bao, Yue Deng, Qionghai Dai:
ACID: Association Correction for Imbalanced Data in GWAS. 316-322 - Hongmei Jiao, Michael Shi, Qikun Shen, Junwu Zhu, Peng Shi:
Filter Design with Adaptation to Time-Delay Parameters for Genetic Regulatory Networks. 323-329 - Ahed Elmsallati, Abdulghani Msalati, Jugal Kalita:
Index-Based Network Aligner of Protein-Protein Interaction Networks. 330-336 - Elizabeth S. Allman, James H. Degnan, John A. Rhodes:
Species Tree Inference from Gene Splits by Unrooted STAR Methods. 337-342 - Frederick A. Matsen IV, Sara C. Billey, Arnold Kas, Matjaz Konvalinka:
Tanglegrams: A Reduction Tool for Mathematical Phylogenetics. 343-349
Volume 15, Number 2, March - April 2018
- Adrian-Horia Dediu, Carlos Martín-Vide:
Selected Papers of the First International Conference on Algorithms for Computational Biology (AlCoB 2014). 350-351 - Thiago da Silva Arruda, Ulisses Dias, Zanoni Dias:
A GRASP-Based Heuristic for the Sorting by Length-Weighted Inversions Problem. 352-363 - Ivo Hedtke, Ioana M. Lemnian, Ivo Grosse, Matthias Müller-Hannemann:
Optimal Block-Based Trimming for Next Generation Sequencing. 364-376 - Congping Lin, Laurent Lemarchand, Reinhardt Euler, Imogen Sparkes:
Modeling the Geometry and Dynamics of the Endoplasmic Reticulum Network. 377-386 - Amina Noor, Aitzaz Ahmad, Erchin Serpedin:
SparseNCA: Sparse Network Component Analysis for Recovering Transcription Factor Activities with Incomplete Prior Information. 387-395 - Jijun Tang, Lu Tian, Yi-Ping Phoebe Chen:
Guest Editorial for the 14th Asia Pacific Bioinformatics Conference. 396-397 - Daniel H. Huson, Simone Linz:
Autumn Algorithm - Computation of Hybridization Networks for Realistic Phylogenetic Trees. 398-410 - Weiyun Ma, Dmitriy Smirnov, Juliet Forman, A. Schweickart, C. Slocum, S. Srinivasan, Ran Libeskind-Hadas:
DTL-RnB: Algorithms and Tools for Summarizing the Space of DTL Reconciliations. 411-421 - Zhi-Zhong Chen, Qilong Feng, Chao Shen, Jianxin Wang, Lusheng Wang:
Algorithms for Pedigree Comparison. 422-431 - Moonshik Shin, Donjin Jang, Hojung Nam, Kwang Hyung Lee, Doheon Lee:
Predicting the Absorption Potential of Chemical Compounds Through a Deep Learning Approach. 432-440 - Seunghyun Park, Hyun-Soo Choi, Byunghan Lee, Jongsik Chun, Joong-Ho Won, Sungroh Yoon:
hc-OTU: A Fast and Accurate Method for Clustering Operational Taxonomic Units Based on Homopolymer Compaction. 441-451 - Dimitris P. Papamichail, Hongmei Liu, Vitor Machado, Nathan Gould, J. Robert Coleman, Georgios Papamichail:
Codon Context Optimization in Synthetic Gene Design. 452-459 - Jiangeng Li, Wei Zhang, Xiaodan Li:
3D Genome Reconstruction with ShRec3D+ and Hi-C Data. 460-468 - Rahul Singh, Rachel Beasley, Thavy Long, Conor R. Caffrey:
Algorithmic Mapping and Characterization of the Drug-Induced Phenotypic-Response Space of Parasites Causing Schistosomiasis. 469-481 - Bijoy K. Ghosh, Aniruddha Datta, Ranadip Pal:
Deep Sequencing Data Analysis. 482-483 - Jason M. Knight, Ivan Ivanov, Karen Triff, Robert S. Chapkin, Edward R. Dougherty:
Detecting Multivariate Gene Interactions in RNA-Seq Data Using Optimal Bayesian Classification. 484-493 - Noushin Ghaffari, Osama A. Arshad, Hyundoo Jeong, John Thiltges, Michael F. Criscitiello, Byung-Jun Yoon, Aniruddha Datta, Charles D. Johnson:
Examining De Novo Transcriptome Assemblies via a Quality Assessment Pipeline. 494-505 - Mansuck Kim, Huan Zhang, Charles Woloshuk, Won-Bo Shim, Byung-Jun Yoon:
Computational Prediction of Pathogenic Network Modules in Fusarium verticillioides. 506-515 - Arghavan Bahadorinejad, Ulisses M. Braga-Neto:
Optimal Fault Detection and Diagnosis in Transcriptional Circuits Using Next-Generation Sequencing. 516-525 - Xiaodong Cui, Lin Zhang, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang:
MeTDiff: A Novel Differential RNA Methylation Analysis for MeRIP-Seq Data. 526-534 - Jing Zhang, Tianming Liu, Gopikrishna Deshpande:
Probabilistic Methods in Computational Neuroscience. 535-536 - Yize Zhao, Jian Kang, Qi Long:
Bayesian Multiresolution Variable Selection for Ultra-High Dimensional Neuroimaging Data. 537-550 - Lin Yuan, Fanglin Chen, Ling-Li Zeng, Lubin Wang, Dewen Hu:
Gender Identification of Human Brain Image with A Novel 3D Descriptor. 551-561 - Meng Hu, Wu Li, Hualou Liang:
A Copula-Based Granger Causality Measure for the Analysis of Neural Spike Train Data. 562-569 - Lijun Zhang, Ming Wang, Nicholas W. Sterling, Eun-Young Lee, Paul J. Eslinger, Daymond Wagner, Guangwei Du, Mechelle Lewis, Young Truong, F. DuBois Bowman, Xuemei Huang:
Cortical Thinning and Cognitive Impairment in Parkinson's Disease without Dementia. 570-580 - João Ricardo Sato, Maciel Calebe Vidal, Suzana de Siqueira Santos, Katlin Brauer Massirer, André Fujita:
Complex Network Measures in Autism Spectrum Disorders. 581-587 - Biing-Feng Wang:
A New Efficient Algorithm for the Frequent Gene Team Problem. 588-598 - Suneetha Uppu, Aneesh Krishna, Raj P. Gopalan:
A Review on Methods for Detecting SNP Interactions in High-Dimensional Genomic Data. 599-612 - Mahdi Barat Zadeh Joveini, Javad Sadri:
Application of Fractal Theory on Motifs Counting in Biological Networks. 613-623 - Jin Liu, Min Li, Wei Lan, Fang-Xiang Wu, Yi Pan, Jianxin Wang:
Classification of Alzheimer's Disease Using Whole Brain Hierarchical Network. 624-632 - Jinghui Li, Hiroshi Nagamochi, Tatsuya Akutsu:
Enumerating Substituted Benzene Isomers of Tree-Like Chemical Graphs. 633-646 - Xiaoke Ma, Wanxin Tang, Peizhuo Wang, Xingli Guo, Lin Gao:
Extracting Stage-Specific and Dynamic Modules Through Analyzing Multiple Networks Associated with Cancer Progression. 647-658 - Jayanta Kumar Pal, Shubhra Sankar Ray, Sung-Bae Cho, Sankar K. Pal:
Fuzzy-Rough Entropy Measure and Histogram Based Patient Selection for miRNA Ranking in Cancer. 659-672 - Sanghamitra Bandyopadhyay, Saurav Mallik:
Integrating Multiple Data Sources for Combinatorial Marker Discovery: A Study in Tumorigenesis. 673-687
Volume 15, Number 3, May - June 2018
- Julia Handl, Amarda Shehu, José Santos Reyes:
Advances in the Application and Development of Non-Linear Global Optimization Techniques in Computational Structural Biology. 688-689 - Leonardo de Lima Correa, Bruno Borguesan, Camilo Farfán, Mario Inostroza-Ponta, Márcio Dorn:
A Memetic Algorithm for 3D Protein Structure Prediction Problem. 690-704 - Jiaxiang Huang, Maoguo Gong, Lijia Ma:
A Global Network Alignment Method Using Discrete Particle Swarm Optimization. 705-718 - Emmanuel Sapin, Kenneth A. De Jong, Amarda Shehu:
From Optimization to Mapping: An Evolutionary Algorithm for Protein Energy Landscapes. 719-731 - Jakub Rydzewski, Rafal Jakubowski, Giuseppe Nicosia, Wieslaw Nowak:
Conformational Sampling of a Biomolecular Rugged Energy Landscape. 732-739 - Matthias Leinweber, Thomas Fober, Bernd Freisleben:
GPU-Based Point Cloud Superpositioning for Structural Comparisons of Protein Binding Sites. 740-752 - Jie Zhou, Yuan-Yuan Shi:
A Bipartite Network and Resource Transfer-Based Approach to Infer lncRNA-Environmental Factor Associations. 753-759 - Maiju Pesonen, Jaakko Nevalainen, Steven Potter, Somnath Datta, Susmita Datta:
A Combined PLS and Negative Binomial Regression Model for Inferring Association Networks from Next-Generation Sequencing Count Data. 760-773 - Xiangtao Li, Ka-Chun Wong:
A Comparative Study for Identifying the Chromosome-Wide Spatial Clusters from High-Throughput Chromatin Conformation Capture Data. 774-787 - Xin Peng, Yang Tang, Wangli He, Wenli Du, Feng Qian:
A Just-in-Time Learning Based Monitoring and Classification Method for Hyper/Hypocalcemia Diagnosis. 788-801 - Xichuan Zhou, Fan Yang, Yujie Feng, Qin Li, Fang Tang, Shengdong Hu, Zhi Lin, Lei Zhang:
A Spatial-Temporal Method to Detect Global Influenza Epidemics Using Heterogeneous Data Collected from the Internet. 802-812 - Neslihan Avcu, Nihal Pekergin, Ferhan Pekergin, Cüneyt Güzelis:
Aggregation for Computing Multi-Modal Stationary Distributions in 1-D Gene Regulatory Networks. 813-827 - Wei Shao, Mingxia Liu, Ying-Ying Xu, Hong-Bin Shen, Daoqiang Zhang:
An Organelle Correlation-Guided Feature Selection Approach for Classifying Multi-Label Subcellular Bio-Images. 828-838 - Pritha Dutta, Subhadip Basu, Mahantapas Kundu:
Assessment of Semantic Similarity between Proteins Using Information Content and Topological Properties of the Gene Ontology Graph. 839-849 - Aurélie Pirayre, Camille Couprie, Laurent Duval, Jean-Christophe Pesquet:
BRANE Clust: Cluster-Assisted Gene Regulatory Network Inference Refinement. 850-860 - Somaya Hashem, Gamal Esmat, Wafaa Elakel, Shahira M. Habashy, Safaa Abdel Raouf, Mohamed Elhefnawi, Mohamed Eladawy, Mahmoud ElHefnawi:
Comparison of Machine Learning Approaches for Prediction of Advanced Liver Fibrosis in Chronic Hepatitis C Patients. 861-868 - Sumanta Ray, Ujjwal Maulik:
Discovering Perturbation of Modular Structure in HIV Progression by Integrating Multiple Data Sources Through Non-Negative Matrix Factorization. 869-877 - Aseel Awdeh, Hilary Phenix, Mads Kærn, Theodore J. Perkins:
Dynamics in Epistasis Analysis. 878-891 - Tiantian He, Keith C. C. Chan:
Evolutionary Graph Clustering for Protein Complex Identification. 892-904 - Najmul Ikram Qazi, Muhammad Abdul Qadir, Muhammad Tanvir Afzal:
Investigating Correlation between Protein Sequence Similarity and Semantic Similarity Using Gene Ontology Annotations. 905-912 - Lin Zhu, Hong-Bo Zhang, De-Shuang Huang:
LMMO: A Large Margin Approach for Refining Regulatory Motifs. 913-925 - Pedro Alves, Shuang Liu, Daifeng Wang, Mark Gerstein:
Multiple-Swarm Ensembles: Improving the Predictive Power and Robustness of Predictive Models and Its Use in Computational Biology. 926-933 - Samira Fotoohifiroozabadi, Mohd Saberi Mohamad, Safaai Deris:
NAHAL-Flex: A Numerical and Alphabetical Hinge Detection Algorithm for Flexible Protein Structure Alignment. 934-943 - Wenwen Min, Juan Liu, Shihua Zhang:
Network-Regularized Sparse Logistic Regression Models for Clinical Risk Prediction and Biomarker Discovery. 944-953 - Davide Chicco, Fernando Palluzzi, Marco Masseroli:
Novelty Indicator for Enhanced Prioritization of Predicted Gene Ontology Annotations. 954-965 - Zoya Khalid, Osman Ugur Sezerman:
Prediction of HIV Drug Resistance by Combining Sequence and Structural Properties. 966-973 - Jin-Xing Liu, Dong Wang, Ying-Lian Gao, Chun-Hou Zheng, Yong Xu, Jiguo Yu:
Regularized Non-Negative Matrix Factorization for Identifying Differentially Expressed Genes and Clustering Samples: A Survey. 974-987 - Junhua Zhang, Shihua Zhang:
The Discovery of Mutated Driver Pathways in Cancer: Models and Algorithms. 988-998 - Bin Wang, Xuedong Zheng, Shihua Zhou, Changjun Zhou, Xiaopeng Wei, Qiang Zhang, Ziqi Wei:
Constructing DNA Barcode Sets Based on Particle Swarm Optimization. 999-1002 - Carl Poirier, Benoit Gosselin, Paul Fortier:
DNA Assembly with De Bruijn Graphs Using an FPGA Platform. 1003-1009 - Ruth Davidson, MaLyn Lawhorn, Joseph Rusinko, Noah Weber:
Efficient Quartet Representations of Trees and Applications to Supertree and Summary Methods. 1010-1015 - Xianpeng Liang, Lin Zhu, De-Shuang Huang:
Optimization of Gene Set Annotations Using Robust Trace-Norm Multitask Learning. 1016-1021 - Chengyu Liu, Rainer Lehtonen, Sampsa Hautaniemi:
PerPAS: Topology-Based Single Sample Pathway Analysis Method. 1022-1027 - Abolfazl Doostparast Torshizi, Linda R. Petzold:
Sparse Pathway-Induced Dynamic Network Biomarker Discovery for Early Warning Signal Detection in Complex Diseases. 1028-1034 - Wei Zhang, Jia Xu, Yuanyuan Li, Xiufen Zou:
Correction to "Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information". 1035
Volume 15, Number 4, July - August 2018
- T. M. Murali:
Guest Editorial. 1036 - Asish Ghoshal, Jinyi Zhang, Michael A. Roth, Kevin Muyuan Xia, Ananth Y. Grama, Somali Chaterji:
A Distributed Classifier for MicroRNA Target Prediction with Validation Through TCGA Expression Data. 1037-1051 - Shi Qiao, Mehmet Koyutürk, Z. Meral Özsoyoglu:
Querying of Disparate Association and Interaction Data in Biomedical Applications. 1052-1065 - Alexej Gossmann, Shaolong Cao, Damian Brzyski, Lan-Juan Zhao, Hong-Wen Deng, Yu-Ping Wang:
A Sparse Regression Method for Group-Wise Feature Selection with False Discovery Rate Control. 1066-1078 - Md Abdul Alim, Ahmet Ay, Md Mahmudul Hasan, My T. Thai, Tamer Kahveci:
Construction of Signaling Pathways with RNAi Data and Multiple Reference Networks. 1079-1091 - Xiaodan Fan, Xinglai Ji, Rui Jiang:
Guest Editorial for Special Section on the Sixth National Conference on Bioinformatics and System Biology of China. 1092 - Mahdi Zamanighomi, Mostafa Zamanian, Michael Kimber, Zhengdao Wang:
Gene Regulatory Network Inference from Perturbed Time-Series Expression Data via Ordered Dynamical Expansion of Non-Steady State Actors. 1093-1106 - Ke Liu, Sha Hou, Junbiao Dai, Zhirong Sun:
PyMut: A Web Tool for Overlapping Gene Loss-of-Function Mutation Design. 1107-1110 - Xiangfei Cheng, Yue Hou, Yumin Nie, Yiru Zhang, Huan Huang, Hongde Liu, Xiao Sun:
Nucleosome Positioning of Intronless Genes in the Human Genome. 1111-1121 - Ezio Bartocci, Pietro Liò, Nicola Paoletti:
Guest Editors' Introduction to the Special Section on the 14th International Conference on Computational Methods in Systems Biology (CMSB 2016). 1122-1123 - Jérôme Feret, Kim Quyen Ly:
Local Traces: An Over-Approximation of the Behavior of the Proteins in Rule-Based Models. 1124-1137 - François Fages, Thierry Martinez, David A. Rosenblueth, Sylvain Soliman:
Influence Networks Compared with Reaction Networks: Semantics, Expressivity and Attractors. 1138-1151 - Chunyan Mu, Peter Dittrich, David Parker, Jonathan E. Rowe:
Organisation-Oriented Coarse Graining and Refinement of Stochastic Reaction Networks. 1152-1166 - Loïc Paulevé:
Reduction of Qualitative Models of Biological Networks for Transient Dynamics Analysis. 1167-1179 - Michael Backenköhler, Luca Bortolussi, Verena Wolf:
Moment-Based Parameter Estimation for Stochastic Reaction Networks in Equilibrium. 1180-1192 - Alejandro Fernández Villaverde, Kolja Becker, Julio R. Banga:
PREMER: A Tool to Infer Biological Networks. 1193-1202 - Andrzej Mizera, Jun Pang, Cui Su, Qixia Yuan:
ASSA-PBN: A Toolbox for Probabilistic Boolean Networks. 1203-1216 - Eugen Czeizler, Wu Kai Chiu, Cristian Gratie, Krishna Kanhaiya, Ion Petre:
Structural Target Controllability of Linear Networks. 1217-1228 - Tijana Milenkovic, Sarath Chandra Janga:
Great Lakes Bioinformatics Conference (GLBIO) 2015 Special Section Editorial. 1229-1230 - James B. Pease, Benjamin K. Rosenzweig:
Encoding Data Using Biological Principles: The Multisample Variant Format for Phylogenomics and Population Genomics. 1231-1238 - Adam Roth, Sandeep Subramanian, Madhavi K. Ganapathiraju:
Towards Extracting Supporting Information About Predicted Protein-Protein Interactions. 1239-1246 - Satwica Yerneni, Ishita K. Khan, Qing Wei, Daisuke Kihara:
IAS: Interaction Specific GO Term Associations for Predicting Protein-Protein Interaction Networks. 1247-1258 - Seyedsasan Hashemikhabir, Ran Xia, Yang Xiang, Sarath Chandra Janga:
A Framework for Identifying Genotypic Information from Clinical Records: Exploiting Integrated Ontology Structures to Transfer Annotations between ICD Codes and Gene Ontologies. 1259-1269 - Pranjal Patra, Tatsuo Izawa, Lourdes Peña Castillo:
REPA: Applying Pathway Analysis to Genome-Wide Transcription Factor Binding Data. 1270-1283 - Rodrigo F. Ramalho, Sujun Li, Predrag Radivojac, Matthew W. Hahn:
Proteomic Evidence for In-Frame and Out-of-Frame Alternatively Spliced Isoforms in Human and Mouse. 1284-1289 - Rami Al-ouran, Robert Schmidt, Ashwini Naik, Jeffrey Jones, Frank Drews, David W. Juedes, Laura Elnitski, Lonnie R. Welch:
Discovering Gene Regulatory Elements Using Coverage-Based Heuristics. 1290-1300 - Liliana Ironi, Ettore Lanzarone:
A Model-Based Tool for the Analysis and Design of Gene Regulatory Networks. 1301-1314 - Chun-Qiu Xia, Ke Han, Yong Qi, Yang Zhang, Dong-Jun Yu:
A Self-Training Subspace Clustering Algorithm under Low-Rank Representation for Cancer Classification on Gene Expression Data. 1315-1324 - Xinyu He, Lishuang Li, Yang Liu, Xiaoming Yu, Jun Meng:
A Two-Stage Biomedical Event Trigger Detection Method Integrating Feature Selection and Word Embeddings. 1325-1332 - Iman Deznabi, Mohammad Mobayen, Nazanin Jafari, Öznur Tastan, Erman Ayday:
An Inference Attack on Genomic Data Using Kinship, Complex Correlations, and Phenotype Information. 1333-1343 - Qian Xie, Xiaoyan He, Fangji Yang, Xuling Liu, Ying Li, Yujing Liu, ZhengMeng Yang, Jianhai Yu, Bao Zhang, Wei Zhao:
Analysis of the Genome Sequence and Prediction of B-Cell Epitopes of the Envelope Protein of Middle East Respiratory Syndrome-Coronavirus. 1344-1350 - Yoram Zarai, Michael Margaliot, Eduardo D. Sontag, Tamir Tuller:
Controllability Analysis and Control Synthesis for the Ribosome Flow Model. 1351-1364 - Shangce Gao, Shuangbao Song, Jiujun Cheng, Yuki Todo, MengChu Zhou:
Incorporation of Solvent Effect into Multi-Objective Evolutionary Algorithm for Improved Protein Structure Prediction. 1365-1378 - Karlene Nicole Meyer, Michelle R. Lacey:
Modeling Methylation Patterns with Long Read Sequencing Data. 1379-1389 - Guoxian Yu, Guangyuan Fu, Jun Wang, Yingwen Zhao:
NewGOA: Predicting New GO Annotations of Proteins by Bi-Random Walks on a Hybrid Graph. 1390-1402
Volume 15, Number 5, September - October 2018
- Erman Ayday, Xiaoqian Jiang, Bradley A. Malin:
GenoPri'16: International Workshop on Genome Privacy and Security. 1403-1404 - Michael Backes, Pascal Berrang, Mathias Humbert, Xiaoyu Shen, Verena Wolf:
Simulating the Large-Scale Erosion of Genomic Privacy Over Time. 1405-1412 - Jean Louis Raisaro, Gwangbae Choi, Sylvain Pradervand, Raphael Colsenet, Nathalie Jacquemont, Nicolas Rosat, Vincent Mooser, Jean-Pierre Hubaux:
Protecting Privacy and Security of Genomic Data in i2b2 with Homomorphic Encryption and Differential Privacy. 1413-1426 - Dan Bogdanov, Liina Kamm, Sven Laur, Ville Sokk:
Implementation and Evaluation of an Algorithm for Cryptographically Private Principal Component Analysis on Genomic Data. 1427-1432 - De-Shuang Huang, Vitoantonio Bevilacqua, M. Michael Gromiha:
Guest Editorial for Special Section on the 12th International Conference on Intelligent Computing (ICIC). 1433-1435 - A. Kulandaisamy, Ambuj Srivastava, Pradeep Kumar, Raju Nagarajan, S. Binny Priya, M. Michael Gromiha:
Identification and Analysis of Key Residues in Protein-RNA Complexes. 1436-1444 - Hongjie Wu, Chengyuan Cao, Xiaoyan Xia, Qiang Lv:
Unified Deep Learning Architecture for Modeling Biology Sequence. 1445-1452 - Wenzheng Bao, Chang-An Yuan, Youhua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang:
Mutli-Features Prediction of Protein Translational Modification Sites. 1453-1460 - Wook Lee, Byungkyu Park, Kyungsook Han:
Sequence-Based Prediction of Putative Transcription Factor Binding Sites in DNA Sequences of Any Length. 1461-1469 - Xiaoli Lin, Xiaolong Zhang:
Prediction of Hot Regions in PPIs Based on Improved Local Community Structure Detecting. 1470-1479 - Su-Ping Deng, Wenxing Hu, Vince D. Calhoun, Yu-Ping Wang:
Integrating Imaging Genomic Data in the Quest for Biomarkers of Schizophrenia Disease. 1480-1491 - Giulia Russo, Marzio Pennisi, Roberta Boscarino, Francesco Pappalardo:
Continuous Petri Nets and microRNA Analysis in Melanoma. 1492-1499 - Jian Liu, Yuhu Cheng, Xuesong Wang, Xiaoluo Cui, Yi Kong, Junping Du:
Low Rank Subspace Clustering via Discrete Constraint and Hypergraph Regularization for Tumor Molecular Pattern Discovery. 1500-1512 - Lusheng Wang, Shuai Cheng Li, Yi-Ping Phoebe Chen:
Guest Editorial for the 15th Asia Pacific Bioinformatics Conference. 1513-1514 - Jaroslaw Paszek, Pawel Górecki:
Efficient Algorithms for Genomic Duplication Models. 1515-1524 - Andrzej Mizera, Jun Pang, Qixia Yuan:
Reviving the Two-State Markov Chain Approach. 1525-1537 - Shuai An, Jun Wang, Jinmao Wei:
Local-Nearest-Neighbors-Based Feature Weighting for Gene Selection. 1538-1548 - Nan Jiang, Wenge Rong, Yifan Nie, Yikang Shen, Zhang Xiong:
Biological Event Trigger Identification with Noise Contrastive Estimation. 1549-1559 - Manuel Lafond, Cédric Chauve, Nadia El-Mabrouk, Aïda Ouangraoua:
Gene Tree Construction and Correction Using SuperTree and Reconciliation. 1560-1570 - Agnieszka Mykowiecka, Pawel Szczesny, Pawel Górecki:
Inferring Gene-Species Assignments in the Presence of Horizontal Gene Transfer. 1571-1578 - Yue Zhang, Chunfang Zheng, David Sankoff:
Evolutionary Model for the Statistical Divergence of Paralogous and Orthologous Gene Pairs Generated by Whole Genome Duplication and Speciation. 1579-1584 - Tom Hartmann, Nicolas Wieseke, Roded Sharan, Martin Middendorf, Matthias Bernt:
Genome Rearrangement with ILP. 1585-1593 - Nafiseh Sedaghat, Mahmood Fathy, Mohammad Hossein Modarressi, Ali Shojaie:
Combining Supervised and Unsupervised Learning for Improved miRNA Target Prediction. 1594-1604 - Safwat H. Hamad, Ahmed Elhadad, Amal Khalifa:
DNA Watermarking Using Codon Postfix Technique. 1605-1610 - Jorge E. Duarte-Sanchez, Jaime Velasco-Medina, Pedro A. Moreno:
Hardware Accelerator for the Multifractal Analysis of DNA Sequences. 1611-1624 - Nha Nguyen, An P. N. Vo, Haibin Sun, Heng Huang:
Heavy-Tailed Noise Suppression and Derivative Wavelet Scalogram for Detecting DNA Copy Number Aberrations. 1625-1635 - Xiaoke Ma, Penggang Sun, Guimin Qin:
Identifying Condition-Specific Modules by Clustering Multiple Networks. 1636-1648 - Jin Liu, Jianxin Wang, Zhenjun Tang, Bin Hu, Fang-Xiang Wu, Yi Pan:
Improving Alzheimer's Disease Classification by Combining Multiple Measures. 1649-1659 - Shuai Ren, Yan Shi, Maolin Cai, Weiqing Xu:
Influence of Airway Secretion on Airflow Dynamics of Mechanical Ventilated Respiratory System. 1660-1668 - Vipin Vijayan, Tijana Milenkovic:
Multiple Network Alignment via MultiMAGNA++. 1669-1682 - Chunjiang Yu, Wentao Wu, Jing Wang, Yuxin Lin, Yang Yang, Jiajia Chen, Fei Zhu, Bairong Shen:
NGS-FC: A Next-Generation Sequencing Data Format Converter. 1683-1691 - Hasan M. Jamil:
Optimizing Phylogenetic Queries for Performance. 1692-1705 - Min Liu, Yue He, Weili Qian, Yangliu Wei, Xiaoyan Liu:
Cell Population Tracking in a Honeycomb Structure Using an IMM Filter Based 3D Local Graph Matching Model. 1706-1717 - Shifu Chen, Ming Liu, Xiaoni Zhang, Renwen Long, Yixing Wang, Yue Han, Shiwei Zhang, Mingyan Xu, Jia Gu:
A Study of Cell-Free DNA Fragmentation Pattern and Its Application in DNA Sample Type Classification. 1718-1722 - Pawel Górecki, Oliver Eulenstein:
Bijective Diameters of Gene Tree Parsimony Costs. 1723-1727 - Youyuan Li, Yingping Zhuang:
fmpRPMF: A Web Implementation for Protein Identification by Robust Peptide Mass Fingerprinting. 1728-1731 - Jorge González-Domínguez, María J. Martín:
MPIGeneNet: Parallel Calculation of Gene Co-Expression Networks on Multicore Clusters. 1732-1737 - Shubhanshu Shekhar, Sebastien Roch, Siavash Mirarab:
Species Tree Estimation Using ASTRAL: How Many Genes Are Enough? 1738-1747
Volume 15, Number 6, November - December 2018
- Tianhai Tian, Jingshan Huang:
Guest Editorial for Special Section on BIBM 2015. 1752-1753 - Yu-Chiao Chiu, Tzu-Hung Hsiao, Li-Ju Wang, Yidong Chen, Eric Y. Chuang:
Analyzing Differential Regulatory Networks Modulated by Continuous-State Genomic Features in Glioblastoma Multiforme. 1754-1764 - Bin Hu, Yongqiang Dai, Yun Su, Philip Moore, Xiaowei Zhang, Chengsheng Mao, Jing Chen, Lixin Xu:
Feature Selection for Optimized High-Dimensional Biomedical Data Using an Improved Shuffled Frog Leaping Algorithm. 1765-1773 - Wei Lan, Jianxin Wang, Min Li, Jin Liu, Fang-Xiang Wu, Yi Pan:
Predicting MicroRNA-Disease Associations Based on Improved MicroRNA and Disease Similarities. 1774-1782 - Tatiana Maximova, Erion Plaku, Amarda Shehu:
Structure-Guided Protein Transition Modeling with a Probabilistic Roadmap Algorithm. 1783-1796 - Bo Xu, Hongfei Lin, Yuan Lin, Yunlong Ma, Liang Yang, Jian Wang, Zhihao Yang:
Improve Biomedical Information Retrieval Using Modified Learning to Rank Methods. 1797-1809 - Hongbo Zhang, Lin Zhu, De-Shuang Huang:
DiscMLA: An Efficient Discriminative Motif Learning Algorithm over High-Throughput Datasets. 1810-1820 - Sun Kim:
Editorial for Selected Papers of a Joint Conferences, Genome Informatics Workshop/International Conference on Bioinformatics (GIW/InCoB) 2015. 1821 - Osamu Hirose, Shotaro Kawaguchi, Terumasa Tokunaga, Yu Toyoshima, Takayuki Teramoto, Sayuri Kuge, Takeshi Ishihara, Yuichi Iino, Ryo Yoshida:
SPF-CellTracker: Tracking Multiple Cells with Strongly-Correlated Moves Using a Spatial Particle Filter. 1822-1831 - Zhanzhan Cheng, Shuigeng Zhou, Yang Wang, Hui Liu, Jihong Guan, Yi-Ping Phoebe Chen:
Effectively Identifying Compound-Protein Interactions by Learning from Positive and Unlabeled Examples. 1832-1843 - Hamid D. Ismail, Hiroto Saigo, K. C. Dukka B.:
RF-NR: Random Forest Based Approach for Improved Classification of Nuclear Receptors. 1844-1852 - Takeyuki Tamura, Wei Lu, Jiangning Song, Tatsuya Akutsu:
Computing Minimum Reaction Modifications in a Boolean Metabolic Network. 1853-1862 - Ying Tan, Yuhui Shi:
Special Section on Swarm-Based Algorithms and Applications in Computational Biology and Bioinformatics. 1863-1864 - Ben Niu, Jing Liu, Teresa Wu, Xianghua Chu, Zhengxu Wang, Yanmin Liu:
Coevolutionary Structure-Redesigned-Based Bacterial Foraging Optimization. 1865-1876 - Biao Xu, Yong Zhang, Dunwei Gong, Yi-Nan Guo, Miao Rong:
Environment Sensitivity-Based Cooperative Co-Evolutionary Algorithms for Dynamic Multi-Objective Optimization. 1877-1890 - Yi-Nan Guo, Jian Cheng, Sha Luo, Dunwei Gong, Yu Xue:
Robust Dynamic Multi-Objective Vehicle Routing Optimization Method. 1891-1903 - Weian Guo, Chengyong Si, Yu Xue, Yanfen Mao, Lei Wang, Qidi Wu:
A Grouping Particle Swarm Optimizer with Personal-Best-Position Guidance for Large Scale Optimization. 1904-1915 - Chao Gao, Mingxin Liang, Xianghua Li, Zili Zhang, Zhen Wang, Zhili Zhou:
Network Community Detection Based on the Physarum-Inspired Computational Framework. 1916-1928 - Andrés Iglesias, Akemi Gálvez, Andreina Avila:
Immunological Approach for Full NURBS Reconstruction of Outline Curves from Noisy Data Points in Medical Imaging. 1929-1942 - Qirong Tang, Lu Ding, Fangchao Yu, Yuan Zhang, Yinghao Li, Haibo Tu:
Swarm Robots Search for Multiple Targets Based on an Improved Grouping Strategy. 1943-1950 - Xin Gao, Jake Y. Chen, Mohammed J. Zaki:
Multiscale and Multimodal Analysis for Computational Biology. 1951-1952 - Miguel Monteiro, Ana Catarina Fonseca, Ana Teresa Freitas, Teresa Pinho e Melo, Alexandre P. Francisco, José M. Ferro, Arlindo L. Oliveira:
Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients. 1953-1959 - Annie Wang, Hansaim Lim, Shu-Yuan Cheng, Lei Xie:
ANTENNA, a Multi-Rank, Multi-Layered Recommender System for Inferring Reliable Drug-Gene-Disease Associations: Repurposing Diazoxide as a Targeted Anti-Cancer Therapy. 1960-1967 - Haishuai Wang, Zhicheng Cui, Yixin Chen, Michael Avidan, Arbi Ben Abdallah, Alexander Kronzer:
Predicting Hospital Readmission via Cost-Sensitive Deep Learning. 1968-1978 - Ahmed Halioui, Petko Valtchev, Abdoulaye Baniré Diallo:
Bioinformatic Workflow Extraction from Scientific Texts based on Word Sense Disambiguation. 1979-1990 - Zongliang Yue, Michael T. Neylon, Thanh Nguyen, Timothy Ratliff, Jake Y. Chen:
"Super Gene Set" Causal Relationship Discovery from Functional Genomics Data. 1991-1998 - Meshari Alazmi, Ahmed Abbas, Xianrong Guo, Ming Fan, Lihua Li, Xin Gao:
A Slice-based 13C-detected NMR Spin System Forming and Resonance Assignment Method. 1999-2008 - Kavitha Mukund, Samuel R. Ward, Richard L. Lieber, Shankar Subramaniam:
Co-Expression Network Approach to Studying the Effects of Botulinum Neurotoxin-A. 2009-2016 - Daniel P. Martins, Michael Taynnan Barros, Massimiliano Pierobon, Meenakshisundaram Kandhavelu, Pietro Lio', Sasitharan Balasubramaniam:
Computational Models for Trapping Ebola Virus Using Engineered Bacteria. 2017-2027 - Juntao Li, Wenpeng Dong, Deyuan Meng:
Grouped Gene Selection of Cancer via Adaptive Sparse Group Lasso Based on Conditional Mutual Information. 2028-2038 - Ho-Chun Wu, Xi-Guang Wei, Shing-Chow Chan:
Novel Consensus Gene Selection Criteria for Distributed GPU Partial Least Squares-Based Gene Microarray Analysis in Diffused Large B Cell Lymphoma (DLBCL) and Related Findings. 2039-2052 - Surama Biswas, Sriyankar Acharyya:
A Bi-Objective RNN Model to Reconstruct Gene Regulatory Network: A Modified Multi-Objective Simulated Annealing Approach. 2053-2059 - Warith Eddine Djeddi, Sadok Ben Yahia, Engelbert Mephu Nguifo:
A Novel Computational Approach for Global Alignment for Multiple Biological Networks. 2060-2066 - Martin C. Frith, Anish Man Singh Shrestha:
A Simplified Description of Child Tables for Sequence Similarity Search. 2067-2073 - Xizhe Zhang:
Altering Indispensable Proteins in Controlling Directed Human Protein Interaction Network. 2074-2078 - Ting Xu, Le Ou-Yang, Xiaohua Hu, Xiao-Fei Zhang:
Identifying Gene Network Rewiring by Integrating Gene Expression and Gene Network Data. 2079-2085 - Hongmei Jiao, Liping Zhang, Qikun Shen, Junwu Zhu, Peng Shi:
Robust Gene Circuit Control Design for Time-Delayed Genetic Regulatory Networks Without SUM Regulatory Logic. 2086-2093 - Nina Luhmann, Cédric Chauve, Jens Stoye, Roland Wittler:
Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. 2094-2100
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
last updated on 2025-04-25 17:38 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
