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2010 – 2019
- 2019
[j11]Mark S. Alber, Adrian Buganza Tepole
, William R. Cannon, Suvranu De, Salvador Dura-Bernal, Krishna C. Garikipati, George E. Karniadakis, William W. Lytton, Paris Perdikaris, Linda R. Petzold, Ellen Kuhl:
Integrating machine learning and multiscale modeling - perspectives, challenges, and opportunities in the biological, biomedical, and behavioral sciences. npj Digit. Medicine 2 (2019)- 2012
- [j10]Changjun Wu, Ananth Kalyanaraman, William R. Cannon:
pGraph: Efficient Parallel Construction of Large-Scale Protein Sequence Homology Graphs. IEEE Trans. Parallel Distributed Syst. 23(10): 1923-1933 (2012) - [c11]Alys Hugo, Douglas J. Baxter, William R. Cannon, Ananth Kalyanaraman, Gaurav Ramesh Kulkarni, Stephen J. Callister:
Proteotyping of Microbial Communities by Optimization of Tandem Mass Spectrometry Data Interpretation. Pacific Symposium on Biocomputing 2012: 225-234 - 2011
- [j9]Ananth Kalyanaraman, William R. Cannon, Benjamin Latt, Douglas J. Baxter:
MapReduce implementation of a hybrid spectral library-database search method for large-scale peptide identification. Bioinform. 27(21): 3072-3073 (2011) - 2010
- [j8]Anuj R. Shah, Joshua N. Adkins, Douglas J. Baxter, William R. Cannon, Daniel G. Chavarría-Miranda, Sutanay Choudhury, Ian Gorton, Deborah K. Gracio, Todd D. Halter, Navdeep Jaitly, John R. Johnson, Richard T. Kouzes, Matthew C. Macduff, Andrès Márquez, Matthew E. Monroe, Christopher S. Oehmen, William A. Pike, Chad Scherrer, Oreste Villa, Bobbie-Jo M. Webb-Robertson, Paul D. Whitney, Nino Zuljevic:
Applications in Data-Intensive Computing. Adv. Comput. 79: 1-70 (2010) - [j7]Bobbie-Jo M. Webb-Robertson, William R. Cannon, Christopher S. Oehmen, Anuj R. Shah, Vidhya Gurumoorthi, Mary S. Lipton, Katrina M. Waters:
A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics. Bioinform. 26(13): 1677-1683 (2010) - [c10]Changjun Wu, Ananth Kalyanaraman, William R. Cannon:
A Scalable Parallel Algorithm for Large-Scale Protein Sequence Homology Detection. ICPP 2010: 333-342
2000 – 2009
- 2009
- [j6]Julia L. Sharp, John J. Borkowski, Denise Schmoyer, Don Simone Daly, Samuel O. Purvine, William R. Cannon, Gregory B. Hurst:
Statistically appraising process quality of affinity isolation experiments. Comput. Stat. Data Anal. 53(5): 1720-1726 (2009) - [j5]Ronald C. Taylor, Mudita Singhal, Don Simone Daly, Jason M. Gilmore, William R. Cannon, Kelly Domico, Amanda M. White, Deanna L. Auberry, Kenneth J. Auberry, Brian Hooker, Gregory B. Hurst, Jason E. McDermott, W. Hayes McDonald, Dale Pelletier, Denise Schmoyer, H. Steven Wiley:
An analysis pipeline for the inference of protein-protein interaction networks. Int. J. Data Min. Bioinform. 3(4): 409-430 (2009) - [c9]Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, William R. Cannon, Douglas J. Baxter:
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data. ICPP Workshops 2009: 423-430 - 2008
- [j4]Bobbie-Jo M. Webb-Robertson, William R. Cannon, Christopher S. Oehmen, Anuj R. Shah, Vidhya Gurumoorthi, Mary S. Lipton, Katrina M. Waters:
A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics. Bioinform. 24(13): 1503-1509 (2008) - 2007
- [j3]Bobbie-Jo M. Webb-Robertson, William R. Cannon:
Current trends in computational inference from mass spectrometry-based proteomics. Briefings Bioinform. 8(5): 304-317 (2007) - [c8]Bobbie-Jo M. Webb-Robertson, Christopher S. Oehmen, William R. Cannon:
Support Vector Machine Classification of Probability Models and Peptide Features for Improved Peptide Identification from Shotgun Proteomics. ICMLA 2007: 500-505 - [c7]Ronald C. Taylor, Mudita Singhal, Don Simone Daly, Kelly Domico, Amanda M. White, Deanna L. Auberry, Kenneth J. Auberry, Brian Hooker, Gregory B. Hurst, Jason E. McDermott, W. Hayes McDonald, Dale Pelletier, Denise Schmoyer, William R. Cannon:
SEBINI-CABIN: An Analysis Pipeline for Biological Network Inference, with a Case Study in Protein-Protein Interaction Network Reconstruction. ICMLA 2007: 587-593 - [c6]William R. Cannon, Bobbie-Jo M. Webb-Robertson:
Session Introduction. Pacific Symposium on Biocomputing 2007: 403-408 - 2006
- [c5]Bobbie-Jo M. Webb-Robertson, William R. Cannon, Joshua N. Adkins, Deborah K. Gracio:
Session Introduction. Pacific Symposium on Biocomputing 2006: 212-218 - [c4]Christopher S. Oehmen, Lee Ann McCue, Joshua N. Adkins, Katrina M. Waters, Tim Carlson, William R. Cannon, Bobbie-Jo M. Webb-Robertson, Douglas J. Baxter, Elena S. Peterson, Mudita Singhal, Anuj R. Shah, Kyle R. Klicker:
Analytics challenge - High-throughput visual analytics biological sciences: turning data into knowledge. SC 2006: 299 - 2005
- [j2]Joël M. Malard, Alejandro Heredia-Langner, William R. Cannon, Ryan W. Mooney, Douglas J. Baxter:
Peptide identification via constrained multi-objective optimization: Pareto-based genetic algorithms. Concurr. Comput. Pract. Exp. 17(14): 1687-1704 (2005) - 2004
- [j1]Alejandro Heredia-Langner, William R. Cannon, Kenneth D. Jarman, Kristin H. Jarman:
Sequence optimization as an alternative to de novo analysis of tandem mass spectrometry data. Bioinform. 20(14): 2296-2304 (2004) - [c3]Joël M. Malard, Alejandro Heredia-Langner, Douglas J. Baxter, Kristin H. Jarman, William R. Cannon:
Constrained De Novo Peptide Identification via Multi-Objective Optimization. IPDPS 2004 - [c2]Alejandro Heredia-Langner, William R. Cannon, Kenneth D. Jarman, Kristin H. Jarman:
De Novo Analysis of Tandem Mass Spectrometry Data as a Non-Deterministic Optimization Problem. METMBS 2004: 113-117 - 2003
- [c1]Kenneth D. Jarman, William R. Cannon, Kristin H. Jarman, Alejandro Heredia-Langner:
A Model of Random Sequences for de novo Peptide Sequencing. BIBE 2003: 206-213
Coauthor Index
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