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Bruno W. S. Sobral
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Journal Articles
- 2015
- [j16]Chunhong Mao, David Abraham, Alice R. Wattam, Meredith J. C. Wilson, Maulik Shukla
, Hyun Seung Yoo, Bruno W. S. Sobral
:
Curation, integration and visualization of bacterial virulence factors in PATRIC. Bioinform. 31(2): 252-258 (2015) - [j15]Andrew S. Warren
, Cristina Aurrecoechea, Brian P. Brunk, Prerak Desai, Scott J. Emrich
, Gloria I. Giraldo-Calderón
, Omar S. Harb
, Deborah Hix, Daniel Lawson
, Dustin Machi, Chunhong Mao, Michael McClelland
, Eric K. Nordberg, Maulik Shukla
, Leslie B. Vosshall
, Alice R. Wattam, Rebecca Will, Hyun Seung Yoo, Bruno W. S. Sobral
:
RNA-Rocket: an RNA-Seq analysis resource for infectious disease research. Bioinform. 31(9): 1496-1498 (2015) - 2014
- [j14]Alice R. Wattam, David Abraham, Oral Dalay, Terry Disz, Timothy Driscoll
, Joseph L. Gabbard
, Joseph J. Gillespie, Roger Gough, Deborah Hix, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Eric K. Nordberg, Robert Olson, Ross A. Overbeek, Gordon D. Pusch, Maulik Shukla
, Julie Schulman, Rick L. Stevens, Daniel E. Sullivan, Veronika Vonstein, Andrew S. Warren
, Rebecca Will, Meredith J. C. Wilson, Hyun Seung Yoo, Chengdong Zhang, Yan Zhang, Bruno W. S. Sobral
:
PATRIC, the bacterial bioinformatics database and analysis resource. Nucleic Acids Res. 42(Database-Issue): 581-591 (2014) - 2012
- [j13]Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Daniel E. Sullivan, Chunhong Mao, Chunxia Wang, Bruno W. S. Sobral
, Jun'ichi Tsujii, Sophia Ananiadou:
Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011. BMC Bioinform. 13(S-11): S2 (2012) - 2011
- [j12]Timothy Driscoll
, Joseph L. Gabbard
, Chunhong Mao, Oral Dalay, Maulik Shukla, Clark C. Freifeld, Anne Gatewood Hoen, John S. Brownstein, Bruno W. S. Sobral
:
Integration and visualization of host-pathogen data related to infectious diseases. Bioinform. 27(16): 2279-2287 (2011) - 2009
- [j11]Tim Driscoll
, Matthew D. Dyer, T. M. Murali, Bruno W. S. Sobral
:
PIG - the pathogen interaction gateway. Nucleic Acids Res. 37(Database-Issue): 647-650 (2009) - [j10]Shenghua Li, Paul Brazhnik, Bruno W. S. Sobral
, John J. Tyson
:
Temporal Controls of the Asymmetric Cell Division Cycle in Caulobacter crescentus. PLoS Comput. Biol. 5(8) (2009) - 2008
- [j9]C. Zhang, Oswald Crasta, Stephen A. Cammer, Rebecca Will, Ron Kenyon, Daniel E. Sullivan, Q. Yu, W. Sun, R. Jha, D. Liu, Tian Xue, Y. Zhang, M. Moore, Peter B. McGarvey, Hongzhan Huang, Yongxing Chen, J. Zhang, Raja Mazumder
, Cathy H. Wu, Bruno W. S. Sobral:
An emerging cyberinfrastructure for biodefense pathogen and pathogen-host data. Nucleic Acids Res. 36(Database-Issue): 884-891 (2008) - [j8]Shenghua Li, Paul Brazhnik, Bruno W. S. Sobral
, John J. Tyson
:
A Quantitative Study of the Division Cycle of Caulobacter crescentus Stalked Cells. PLoS Comput. Biol. 4(1) (2008) - 2007
- [j7]E. E. Snyder, N. Kampanya, J. Lu, Eric K. Nordberg, H. R. Karur, Maulik Shukla, Jeetendra Soneja, Y. Tian, Tian Xue, Hyun Seung Yoo, Fengkai Zhang
, C. Dharmanolla, N. V. Dongre, Joseph J. Gillespie, J. Hamelius, M. Hance, K. I. Huntington, D. Jukneliene, J. Koziski, L. Mackasmiel, S. P. Mane, V. Nguyen, A. Purkayastha, J. Shallom, G. Yu, Y. Guo, Joseph L. Gabbard
, Deborah Hix, A. F. Azad, S. C. Baker, S. M. Boyle, Y. Khudyakov, X. J. Meng
, C. Rupprecht, J. Vinje
, Oswald Crasta, M. J. Czar, Allan Dickerman, J. Dana Eckart, Ron Kenyon, Rebecca Will, João C. Setubal
, Bruno W. S. Sobral
:
PATRIC: The VBI PathoSystems Resource Integration Center. Nucleic Acids Res. 35(Database-Issue): 401-406 (2007) - 2005
- [j6]Yongqun He
, Richard R. Vines, Alice R. Wattam, Georgiy V. Abramochkin, Allan Dickerman, J. Dana Eckart, Bruno W. S. Sobral
:
PIML: the Pathogen Information Markup Language. Bioinform. 21(1): 116-121 (2005) - [j5]Chunhong Mao, Jing Qiu, Chunxia Wang, Trevor C. Charles
, Bruno W. S. Sobral
:
NodMutDB: a database for genes and mutants involved in symbiosis. Bioinform. 21(12): 2927-2929 (2005) - 2003
- [j4]J. Dana Eckart, Bruno W. S. Sobral
:
A Life Scientist's Gateway to Distributed Data Management and Computing: The PathPort/ToolBus Framework. OMICS 7(1): 79-88 (2003) - 2001
- [j3]Adam C. Siepel
, Andrew D. Farmer, Andrew N. Tolopko, Mingzhe Zhuang, Pedro Mendes
, William D. Beavis, Bruno W. S. Sobral
:
ISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources. Bioinform. 17(1): 83-94 (2001) - [j2]Eva Huala
, Allan Dickerman, Margarita Garcia-Hernandez, Danforth Weems, Leonore Reiser
, Frank LaFond, David Hanley, Donald Kiphart, Mingzhe Zhuang, Wen Huang, Lukas A. Mueller, Debika Bhattacharyya, Devaki Bhaya, Bruno W. S. Sobral
, William D. Beavis, David Meinke, Christopher D. Town, Chris Somerville, Seung Yon Rhee:
The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res. 29(1): 102-105 (2001) - 2000
- [j1]Mark E. Waugh, Peter T. Hraber, Jennifer W. Weller, Yihe Wu, Guanghong Chen, Jeff T. Inman, Donald Kiphart, Bruno W. S. Sobral
:
The Phytophthora Genome Initiative Database: informatics and analysis for distributed pathogenomic research. Nucleic Acids Res. 28(1): 87-90 (2000)
Conference and Workshop Papers
- 2011
- [c10]Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Daniel E. Sullivan, Chunhong Mao, Chunxia Wang, Bruno W. S. Sobral, Jun'ichi Tsujii, Sophia Ananiadou:
Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011. BioNLP@ACL (Shared Task) 2011: 26-35 - [c9]Bruno W. S. Sobral
, Chunhong Mao, Maulik Shukla, Daniel E. Sullivan, Chengdong Zhang:
Informatics-Driven Infectious Disease Research. BIOSTEC (Selected Papers) 2011: 3-11 - [c8]Bruno W. S. Sobral:
Informatics-driven Infectious Disease Research. BIOSTEC 2011: 017 - 2010
- [c7]Sampo Pyysalo, Tomoko Ohta, Han-Cheol Cho, Daniel E. Sullivan, Chunhong Mao, Bruno W. S. Sobral, Jun'ichi Tsujii, Sophia Ananiadou:
Towards Event Extraction from Full Texts on Infectious Diseases. BioNLP@ACL 2010: 132-140 - 2007
- [c6]Tian Xue, Boyu Yang, Rebecca Will, Bruce Sharp, Ron Kenyon, Oswald Crasta, Bruno W. S. Sobral:
A Generalized Framework for Pathosystems Informatics & Bioinformatics Web Services. BIOCOMP 2007: 236-242 - [c5]Matthew D. Dyer, T. M. Murali, Bruno W. S. Sobral
:
Computational prediction of host-pathogen protein-protein interactions. ISMB/ECCB (Supplement of Bioinformatics) 2007: 159-166 - 2006
- [c4]Jing Zhao, Tian Xue, Boyu Yang, Kelly Williams, Alice R. Wattam, Rebecca Will, Bruce Sharp, Ron Kenyon, Oswald Crasta, Bruno W. S. Sobral:
Genome Annotation and Comparison System. BIOCOMP 2006: 154-160 - [c3]Boyu Yang, Tian Xue, Jing Zhao, Chaitanya Kommidi, Jeetendra Soneja, Jian Li, Rebecca Will, Bruce Sharp, Ron Kenyon, Oswald Crasta, Bruno W. S. Sobral:
Bioinformatics Web Services. BIOCOMP 2006: 258-264 - 2005
- [c2]Boyu Yang, J. Dana Eckart, Eric K. Nordberg, Bruno W. S. Sobral:
ToolBus - An Interoperable Environment for Biological Researchers. METMBS 2005: 274-280 - [c1]Bruno W. S. Sobral
:
Cyberinfrastructure for PathoSystems Biology. BSB 2005: 11-27
Coauthor Index
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