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2020 – today
- 2021
[j73]Yuki Arase, Junichi Tsujii:
Transfer fine-tuning of BERT with phrasal paraphrases. Comput. Speech Lang. 66: 101164 (2021)- 2020
- [c240]Hicham El Boukkouri, Olivier Ferret, Thomas Lavergne, Hiroshi Noji, Pierre Zweigenbaum, Jun'ichi Tsujii:
CharacterBERT: Reconciling ELMo and BERT for Word-Level Open-Vocabulary Representations From Characters. COLING 2020: 6903-6915 - [c239]Yuki Arase, Jun'ichi Tsujii:
Compositional Phrase Alignment and Beyond. EMNLP (1) 2020: 1611-1623 - [e19]Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii:
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing, BioNLP 2020, Online, July 9, 2020. Association for Computational Linguistics 2020, ISBN 978-1-952148-09-5 [contents] - [e18]Denis Newman-Griffis, Serguei V. S. Pakhomov, Suzanne Tamang, Ayah Zirikly, Bart Desmet, Hongfang Liu, Junichi Tsujii:
Proceedings of the First Workshop on Artificial Intelligence for Function, Disability, and Health co-located with the 2020 International Joint Conference on Artificial Intelligence - Pacific Rim Conference on Artificial Intelligence (IJCAI-PRICAI 2020), Online, January 7-8, 2021. CEUR Workshop Proceedings 2760, CEUR-WS.org 2020 [contents] - [i3]Hicham El Boukkouri, Olivier Ferret, Thomas Lavergne, Hiroshi Noji, Pierre Zweigenbaum, Junichi Tsujii:
CharacterBERT: Reconciling ELMo and BERT for Word-Level Open-Vocabulary Representations From Characters. CoRR abs/2010.10392 (2020)
2010 – 2019
- 2019
- [j72]Yipei Wang, Xingyu Fan, Luoxin Chen, Eric I-Chao Chang, Sophia Ananiadou, Junichi Tsujii, Yan Xu:
Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries. BMC Bioinform. 20(1): 430:1-430:11 (2019) - [j71]Yifei Wang, Sophia Ananiadou, Jun'ichi Tsujii:
Improving clinical named entity recognition in Chinese using the graphical and phonetic feature. BMC Medical Informatics Decis. Mak. 19-S(7): 273 (2019) - [c238]Yuki Arase, Jun'ichi Tsujii:
Transfer Fine-Tuning: A BERT Case Study. EMNLP/IJCNLP (1) 2019: 5392-5403 - [e17]Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii:
Proceedings of the 18th BioNLP Workshop and Shared Task, BioNLP@ACL 2019, Florence, Italy, August 1, 2019. Association for Computational Linguistics 2019, ISBN 978-1-950737-28-4 [contents] - [i2]Yuki Arase, Junichi Tsujii:
Transfer Fine-Tuning: A BERT Case Study. CoRR abs/1909.00931 (2019) - 2018
- [j70]Paul Thompson, Sophia Daikou, Kenju Ueno, Riza Batista-Navarro, Jun'ichi Tsujii, Sophia Ananiadou:
Annotation and detection of drug effects in text for pharmacovigilance. J. Cheminformatics 10(1): 37:1-37:33 (2018) - [c237]Yifei Wang, Sophia Ananiadou, Jun'ichi Tsujii:
Improve Chinese Clinical Named Entity Recognition Performance by Using the Graphical and Phonetic Feature. BIBM 2018: 1582-1586 - [c236]Yuki Arase, Jun'ichi Tsujii:
SPADE: Evaluation Dataset for Monolingual Phrase Alignment. LREC 2018 - [e16]Dina Demner-Fushman, Kevin Bretonnel Cohen, Sophia Ananiadou, Junichi Tsujii:
Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018. Association for Computational Linguistics 2018, ISBN 978-1-948087-33-9 [contents] - [e15]Ellen Riloff, David Chiang, Julia Hockenmaier, Jun'ichi Tsujii:
Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, Brussels, Belgium, October 31 - November 4, 2018. Association for Computational Linguistics 2018, ISBN 978-1-948087-84-1 [contents] - 2017
- [c235]Motoki Sato, Austin J. Brockmeier
, Georgios Kontonatsios, Tingting Mu, John Yannis Goulermas, Jun'ichi Tsujii, Sophia Ananiadou:
Distributed Document and Phrase Co-embeddings for Descriptive Clustering. EACL (1) 2017: 991-1001 - [c234]Yuki Arase, Junichi Tsujii:
Monolingual Phrase Alignment on Parse Forests. EMNLP 2017: 1-11 - [e14]Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Junichi Tsujii:
BioNLP 2017, Vancouver, Canada, August 4, 2017. Association for Computational Linguistics 2017, ISBN 978-1-945626-59-3 [contents] - 2016
- [c233]Weihua Hu, Jun'ichi Tsujii:
A Latent Concept Topic Model for Robust Topic Inference Using Word Embeddings. ACL (2) 2016 - [e13]Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii:
Proceedings of the 15th Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2016, Berlin, Germany, August 12, 2016. Association for Computational Linguistics 2016, ISBN 978-1-945626-12-8 [contents] - 2015
- [j69]Yan Xu, Luoxin Chen, Junsheng Wei, Sophia Ananiadou, Yubo Fan, Yi Qian, Eric I-Chao Chang, Jun'ichi Tsujii:
Bilingual term alignment from comparable corpora in English discharge summary and Chinese discharge summary. BMC Bioinform. 16: 149:1-149:10 (2015) - [c232]Hiroya Takamura, Jun'ichi Tsujii:
Estimating Numerical Attributes by Bringing Together Fragmentary Clues. HLT-NAACL 2015: 1305-1310 - [e12]Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii:
Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, Beijing, China, July 30, 2015. Association for Computational Linguistics 2015 [contents] - 2014
- [j68]Pontus Stenetorp, Sampo Pyysalo, Sophia Ananiadou, Jun'ichi Tsujii:
Generalising semantic category disambiguation with large lexical resources for fun and profit. J. Biomed. Semant. 5: 26 (2014) - [j67]Tingting Mu, Makoto Miwa, Junichi Tsujii, Sophia Ananiadou:
Discovering robust Embeddings in (DIS)Similarity Space for High-Dimensional Linguistic Features. Comput. Intell. 30(2): 285-315 (2014) - [c231]Hidekazu Oiwa, Jun'ichi Tsujii:
Common Space Embedding of Primal-Dual Relation Semantic Spaces. COLING 2014: 1579-1590 - [c230]Georgios Kontonatsios, Ioannis Korkontzelos, Jun'ichi Tsujii, Sophia Ananiadou:
Using a Random Forest Classifier to Compile Bilingual Dictionaries of Technical Terms from Comparable Corpora. EACL 2014: 111-116 - [c229]Georgios Kontonatsios, Ioannis Korkontzelos, Jun'ichi Tsujii, Sophia Ananiadou:
Combining String and Context Similarity for Bilingual Term Alignment from Comparable Corpora. EMNLP 2014: 1701-1712 - [e11]Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii:
Proceedings of BioNLP, Baltimore, Maryland, USA, BioNLP@ACL 2014, June 27-28, 2014. Association for Computational Linguistics 2014, ISBN 978-1-941643-18-1 [contents] - [e10]Jan Hajic, Junichi Tsujii:
COLING 2014, 25th International Conference on Computational Linguistics, Proceedings of the Conference: Technical Papers, August 23-29, 2014, Dublin, Ireland. ACL 2014, ISBN 978-1-941643-26-6 [contents] - 2013
- [j66]Kenjiro Taura, Takuya Matsuzaki, Makoto Miwa, Yoshikazu Kamoshida, Daisaku Yokoyama, Nan Dun, Takeshi Shibata, Choi Sung Jun, Jun'ichi Tsujii:
Design and implementation of GXP make - A workflow system based on make. Future Gener. Comput. Syst. 29(2): 662-672 (2013) - [j65]Xu Sun, Yao-zhong Zhang, Takuya Matsuzaki, Yoshimasa Tsuruoka, Jun'ichi Tsujii:
Probabilistic Chinese word segmentation with non-local information and stochastic training. Inf. Process. Manag. 49(3): 626-636 (2013) - [j64]Han-Cheol Cho, Naoaki Okazaki, Makoto Miwa, Jun'ichi Tsujii:
Named entity recognition with multiple segment representations. Inf. Process. Manag. 49(4): 954-965 (2013) - [j63]Yan Xu, Yining Wang, Tianren Liu, Junichi Tsujii, Eric I-Chao Chang:
An end-to-end system to identify temporal relation in discharge summaries: 2012 i2b2 challenge. J. Am. Medical Informatics Assoc. 20(5): 849-858 (2013) - [j62]Xu Sun, Naoaki Okazaki, Jun'ichi Tsujii, Houfeng Wang:
Learning Abbreviations from Chinese and English Terms by Modeling Non-Local Information. ACM Trans. Asian Lang. Inf. Process. 12(2): 5:1-5:17 (2013) - [c228]Georgios Kontonatsios, Ioannis Korkontzelos, Sophia Ananiadou, Jun'ichi Tsujii:
Using a Random Forest Classifier to recognise translations of biomedical terms across languages. BUCC@ACL 2013: 95-104 - [c227]Xiangli Wang, Yi Zhang, Yusuke Miyao, Takuya Matsuzaki, Junichi Tsujii:
Deep Context-Free Grammar for Chinese with Broad-Coverage. SIGHAN@IJCNLP 2013: 11-19 - [c226]Tomoko Ohta, Sampo Pyysalo, Rafal Rak, Andrew Rowley, Hong-Woo Chun, Sung-Jae Jung, Sung-Pil Choi, Sophia Ananiadou, Jun'ichi Tsujii:
Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013. BioNLP@ACL (Shared Task) 2013: 67-75 - [e9]Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Junichi Tsujii:
Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2013, Sofia, Bulgaria, August 8, 2013. Association for Computational Linguistics 2013, ISBN 978-1-937284-54-1 [contents] - 2012
- [j61]Sampo Pyysalo, Tomoko Ohta, Makoto Miwa, Han-Cheol Cho, Junichi Tsujii, Sophia Ananiadou:
Event extraction across multiple levels of biological organization. Bioinform. 28(18): 575-581 (2012) - [j60]Ngan L. T. Nguyen, Jin-Dong Kim, Makoto Miwa, Takuya Matsuzaki, Junichi Tsujii:
Improving protein coreference resolution by simple semantic classification. BMC Bioinform. 13: 304 (2012) - [j59]Jin-Dong Kim, Ngan L. T. Nguyen, Yue Wang, Jun'ichi Tsujii, Toshihisa Takagi, Akinori Yonezawa:
The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011. BMC Bioinform. 13(S-11): S1 (2012) - [j58]Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Daniel E. Sullivan, Chunhong Mao, Chunxia Wang, Bruno W. S. Sobral, Jun'ichi Tsujii, Sophia Ananiadou:
Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011. BMC Bioinform. 13(S-11): S2 (2012) - [j57]Yan Xu, Junichi Tsujii, Eric I-Chao Chang:
Named entity recognition of follow-up and time information in 20 000 radiology reports. J. Am. Medical Informatics Assoc. 19(5): 792-799 (2012) - [j56]Yan Xu, Kai Hong, Junichi Tsujii, Eric I-Chao Chang:
Feature engineering combined with machine learning and rule-based methods for structured information extraction from narrative clinical discharge summaries. J. Am. Medical Informatics Assoc. 19(5): 824-832 (2012) - [j55]Yan Xu, Jiahua Liu, Jiajun Wu, Yue Wang, Zhuowen Tu, Jian-Tao Sun, Junichi Tsujii, Eric I-Chao Chang:
A classification approach to coreference in discharge summaries: 2011 i2b2 challenge. J. Am. Medical Informatics Assoc. 19(5): 897-905 (2012) - [j54]Yao-zhong Zhang, Takuya Matsuzaki, Jun'ichi Tsujii:
Structure-guided supertagger learning. Nat. Lang. Eng. 18(2): 205-234 (2012) - [j53]Tingting Mu, John Yannis Goulermas, Jun'ichi Tsujii, Sophia Ananiadou:
Proximity-Based Frameworks for Generating Embeddings from Multi-Output Data. IEEE Trans. Pattern Anal. Mach. Intell. 34(11): 2216-2232 (2012) - [j52]Daniel Andrade, Takuya Matsuzaki, Jun'ichi Tsujii:
Statistical Extraction and Comparison of Pivot Words for Bilingual Lexicon Extension. ACM Trans. Asian Lang. Inf. Process. 11(2): 6:1-6:31 (2012) - [c225]Pontus Stenetorp, Sampo Pyysalo, Tomoko Ohta, Sophia Ananiadou, Jun'ichi Tsujii:
Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far. ExProM@ACL 2012: 47-56 - [c224]Xianchao Wu, Takuya Matsuzaki, Jun'ichi Tsujii:
Akamon: An Open Source Toolkit for Tree/Forest-Based Statistical Machine Translation. ACL (System Demonstrations) 2012: 127-132 - [c223]Jun Hatori, Takuya Matsuzaki, Yusuke Miyao, Jun'ichi Tsujii:
Incremental Joint Approach to Word Segmentation, POS Tagging, and Dependency Parsing in Chinese. ACL (1) 2012: 1045-1053 - [c222]Pontus Stenetorp, Sampo Pyysalo, Goran Topic, Tomoko Ohta, Sophia Ananiadou, Jun'ichi Tsujii:
brat: a Web-based Tool for NLP-Assisted Text Annotation. EACL 2012: 102-107 - [c221]Atsushi Hanamoto, Takuya Matsuzaki, Jun'ichi Tsujii:
Coordination Structure Analysis using Dual Decomposition. EACL 2012: 430-438 - [c220]Xinkai Wang, Paul Thompson, Jun'ichi Tsujii, Sophia Ananiadou:
Biomedical Chinese-English CLIR Using an Extended CMeSH Resource to Expand Queries. LREC 2012: 1148-1155 - [e8]Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Bonnie L. Webber, Jun'ichi Tsujii, John Pestian:
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, BioNLP@HLT-NAACL Montrèal, Canada, June 8, 2012. Association for Computational Linguistics 2012, ISBN 978-1-937284-20-6 [contents] - [e7]Jun'ichi Tsujii, James Henderson, Marius Pasca:
Proceedings of the 2012 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning, EMNLP-CoNLL 2012, July 12-14, 2012, Jeju Island, Korea. ACL 2012, ISBN 978-1-937284-43-5 [contents] - 2011
- [j51]Simon Kocbek, Rune Sætre, Gregor Stiglic, Jin-Dong Kim, Igor Pernek, Yoshimasa Tsuruoka, Peter Kokol, Sophia Ananiadou, Jun'ichi Tsujii:
AGRA: analysis of gene ranking algorithms. Bioinform. 27(8): 1185-1186 (2011) - [j50]Yoshimasa Tsuruoka, Makoto Miwa, Kaisei Hamamoto, Jun'ichi Tsujii, Sophia Ananiadou:
Discovering and visualizing indirect associations between biomedical concepts. Bioinform. 27(13): 111-119 (2011) - [j49]Xinglong Wang, Iain McKendrick, Ian Barrett, Ian Dix, Tim French, Jun'ichi Tsujii, Sophia Ananiadou:
Automatic extraction of angiogenesis bioprocess from text. Bioinform. 27(19): 2730-2737 (2011) - [j48]Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jun'ichi Tsujii:
Event extraction for DNA methylation. J. Biomed. Semant. 2(S-5): S2 (2011) - [j47]Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii:
An analysis of gene/protein associations at PubMed scale. J. Biomed. Semant. 2(S-5): S5 (2011) - [j46]Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii:
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12: 481 (2011) - [j45]Jin-Dong Kim, Tomoko Ohta, Sampo Pyysalo, Yoshinobu Kano, Jun'ichi Tsujii:
Extracting Bio-molecular Events from literature - the BioNLP'09 Shared Task. Comput. Intell. 27(4): 513-540 (2011) - [j44]Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Toshihisa Takagi, Jun'ichi Tsujii:
Bio-molecular Event Extraction with Markov Logic. Comput. Intell. 27(4): 558-582 (2011) - [j43]Yoshinobu Kano, Makoto Miwa, K. Bretonnel Cohen, Lawrence Hunter, Sophia Ananiadou, Jun'ichi Tsujii:
U-Compare: A modular NLP workflow construction and evaluation system. IBM J. Res. Dev. 55(3): 11 (2011) - [c219]Xianchao Wu, Takuya Matsuzaki, Jun'ichi Tsujii:
Effective Use of Function Words for Rule Generalization in Forest-Based Translation. ACL 2011: 22-31 - [c218]Daniel Andrade, Takuya Matsuzaki, Junichi Tsujii:
Learning the Optimal Use of Dependency-parsing Information for Finding Translations with Comparable Corpora. BUCC@ACL 2011: 10-18 - [c217]Shun'ya Iwasawa, Hiroki Hanaoka, Takuya Matsuzaki, Yusuke Miyao, Jun'ichi Tsujii:
A Collaborative Annotation between Human Annotators and a Statistical Parser. Linguistic Annotation Workshop 2011: 56-64 - [c216]Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Robert Bossy, Ngan L. T. Nguyen, Jun'ichi Tsujii:
Overview of BioNLP Shared Task 2011. BioNLP@ACL (Shared Task) 2011: 1-6 - [c215]Tomoko Ohta, Sampo Pyysalo, Jun'ichi Tsujii:
Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011. BioNLP@ACL (Shared Task) 2011: 16-25 - [c214]Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Daniel E. Sullivan, Chunhong Mao, Chunxia Wang, Bruno W. S. Sobral, Jun'ichi Tsujii, Sophia Ananiadou:
Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011. BioNLP@ACL (Shared Task) 2011: 26-35 - [c213]Yu Usami, Han-Cheol Cho, Naoaki Okazaki, Jun'ichi Tsujii:
Automatic Acquisition of Huge Training Data for Bio-Medical Named Entity Recognition. BioNLP@ACL 2011: 65-73 - [c212]Ngan L. T. Nguyen, Jin-Dong Kim, Jun'ichi Tsujii:
Overview of BioNLP 2011 Protein Coreference Shared Task. BioNLP@ACL (Shared Task) 2011: 74-82 - [c211]Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii:
Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011. BioNLP@ACL (Shared Task) 2011: 83-88 - [c210]Tomoko Ohta, Sampo Pyysalo, Jun'ichi Tsujii:
From Pathways to Biomolecular Events: Opportunities and Challenges. BioNLP@ACL 2011: 105-113 - [c209]Pontus Stenetorp, Goran Topic, Sampo Pyysalo, Tomoko Ohta, Jin-Dong Kim, Jun'ichi Tsujii:
BioNLP Shared Task 2011: Supporting Resources. BioNLP@ACL (Shared Task) 2011: 112-120 - [c208]Sampo Pyysalo, Tomoko Ohta, Makoto Miwa, Jun'ichi Tsujii:
Towards Exhaustive Event Extraction for Protein Modifications. BioNLP@ACL 2011: 114-123 - [c207]Pontus Stenetorp, Sampo Pyysalo, Jun'ichi Tsujii:
SimSem: Fast Approximate String Matching in Relation to Semantic Category Disambiguation. BioNLP@ACL 2011: 136-145 - [c206]Jun'ichi Tsujii:
Computational Linguistics and Natural Language Processing. CICLing (1) 2011: 52-67 - [c205]Daniel Andrade, Takuya Matsuzaki, Jun'ichi Tsujii:
Effective Use of Dependency Structure for Bilingual Lexicon Creation. CICLing (2) 2011: 80-92 - [c204]Jun Hatori, Akiko Murakami, Jun'ichi Tsujii:
Multi-topical Discussion Summarization Using Structured Lexical Chains and Cue Words. CICLing (2) 2011: 313-327 - [c203]Simon Kocbek, Rune Sætre, Gregor Stiglic, Jin-Dong Kim, Igor Pernek, Yoshimasa Tsuruoka, Peter Kokol, Sophia Ananiadou, Jun'ichi Tsujii:
Poster: Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from PubMed publications. ICCABS 2011: 249 - [c202]Tadayoshi Hara, Takuya Matsuzaki, Yusuke Miyao, Jun'ichi Tsujii:
Exploring Difficulties in Parsing Imperatives and Questions. IJCNLP 2011: 749-757 - [c201]Jun Hatori, Takuya Matsuzaki, Yusuke Miyao, Jun'ichi Tsujii:
Incremental Joint POS Tagging and Dependency Parsing in Chinese. IJCNLP 2011: 1216-1224 - [c200]Kun Yu, Yusuke Miyao, Takuya Matsuzaki, Xiangli Wang, Jun'ichi Tsujii:
Analysis of the Difficulties in Chinese Deep Parsing. IWPT 2011: 48-57 - [c199]Junichi Tsujii:
Resource-rich research on natural language processing and understanding. IWSLT 2011: 303 - [c198]Katsuhito Sudoh, Kevin Duh, Hajime Tsukada, Masaaki Nagata, Xianchao Wu, Takuya Matsuzaki, Jun'ichi Tsujii:
NTT-UT Statistical Machine Translation in NTCIR-9 PatentMT. NTCIR 2011 - [c197]Jun'ichi Tsujii:
Natural Language Understanding, Semantic-based Information Retrieval and Knowledge Management. NTCIR 2011 - [c196]Xianchao Wu, Takuya Matsuzaki, Jun'ichi Tsujii:
SMT Systems in the University of Tokyo for NTCIR-9 PatentMT. NTCIR 2011 - [e6]Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber:
Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, BioNLP@ACL, Portland, Oregon, USA, June 23-24, 2011. Association for Computational Linguistics 2011, ISBN 978-1-932432-91-6 [contents] - [e5]Jun'ichi Tsujii, Jin-Dong Kim, Sampo Pyysalo:
Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011. Association for Computational Linguistics 2011, ISBN 9781937284091 [contents] - 2010
- [j42]Xinglong Wang, Jun'ichi Tsujii, Sophia Ananiadou:
Disambiguating the species of biomedical named entities using natural language parsers. Bioinform. 26(5): 661-667 (2010) - [j41]Naoaki Okazaki, Sophia Ananiadou, Jun'ichi Tsujii:
Building a high-quality sense inventory for improved abbreviation disambiguation. Bioinform. 26(9): 1246-1253 (2010) - [j40]Brian Kemper, Takuya Matsuzaki, Yukiko Matsuoka, Yoshimasa Tsuruoka, Hiroaki Kitano, Sophia Ananiadou, Jun'ichi Tsujii:
PathText: a text mining integrator for biological pathway visualizations. Bioinform. 26(12): 374-381 (2010) - [j39]Jari Björne, Filip Ginter, Sampo Pyysalo, Jun'ichi Tsujii, Tapio Salakoski:
Complex event extraction at PubMed scale. Bioinform. 26(12): 382-390 (2010) - [j38]Yoshinobu Kano, Paul D. Dobson, Mio Nakanishi, Jun'ichi Tsujii, Sophia Ananiadou:
Text mining meets workflow: linking U-Compare with Taverna. Bioinform. 26(19): 2486-2487 (2010) - [j37]Tomoko Ohta, Takuya Matsuzaki, Naoaki Okazaki, Makoto Miwa, Rune Sætre, Sampo Pyysalo, Jun'ichi Tsujii:
Medie and Info-pubmed: 2010 update. BMC Bioinform. 11(S-5): P7 (2010) - [j36]Makoto Miwa, Rune Sætre, Jin-Dong Kim, Jun'ichi Tsujii:
Event Extraction with Complex Event Classification Using Rich Features. J. Bioinform. Comput. Biol. 8(1): 131-146 (2010) - [j35]Yue Wang, Jin-Dong Kim, Rune Sætre, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii:
Improving the Inter-Corpora Compatibility for protein Annotations. J. Bioinform. Comput. Biol. 8(5): 901-916 (2010) - [j34]Tomoko Ohta, Sampo Pyysalo, Jin-Dong Kim, Jun'ichi Tsujii:
A Re-Evaluation of Biomedical Named Entity-Term Relations. J. Bioinform. Comput. Biol. 8(5): 917-928 (2010) - [j33]Xianchao Wu, Takuya Matsuzaki, Jun'ichi Tsujii:
Improve syntax-based translation using deep syntactic structures. Mach. Transl. 24(2): 141-157 (2010) - [j32]Rune Sætre, Kazuhiro Yoshida, Makoto Miwa, Takuya Matsuzaki, Yoshinobu Kano, Jun'ichi Tsujii:
Extracting Protein Interactions from Text with the Unified AkaneRE Event Extraction System. IEEE ACM Trans. Comput. Biol. Bioinform. 7(3): 442-453 (2010) - [c195]Xianchao Wu, Takuya Matsuzaki, Jun'ichi Tsujii:
Fine-Grained Tree-to-String Translation Rule Extraction. ACL 2010: 325-334 - [c194]Kun Yu, Xiangli Wang, Yusuke Miyao, Takuya Matsuzaki, Jun'ichi Tsujii:
The Deep Re-Annotation in a Chinese Scientific Treebank. Linguistic Annotation Workshop 2010: 123-126 - [c193]Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jin-Dong Kim, Jun'ichi Tsujii:
Event Extraction for Post-Translational Modifications. BioNLP@ACL 2010: 19-27 - [c192]Jari Björne, Filip Ginter, Sampo Pyysalo, Jun'ichi Tsujii, Tapio Salakoski:
Scaling up Biomedical Event Extraction to the Entire PubMed. BioNLP@ACL 2010: 28-36 - [c191]Makoto Miwa, Sampo Pyysalo, Tadayoshi Hara, Jun'ichi Tsujii:
A Comparative Study of Syntactic Parsers for Event Extraction. BioNLP@ACL 2010: 37-45 - [c190]Sampo Pyysalo, Tomoko Ohta, Han-Cheol Cho, Daniel E. Sullivan, Chunhong Mao, Bruno W. S. Sobral, Jun'ichi Tsujii, Sophia Ananiadou:
Towards Event Extraction from Full Texts on Infectious Diseases. BioNLP@ACL 2010: 132-140 - [c189]Daniel Andrade, Tetsuya Nasukawa, Jun'ichi Tsujii:
Robust Measurement and Comparison of Context Similarity for Finding Translation Pairs. COLING 2010: 19-27 - [c188]Makoto Miwa, Sampo Pyysalo, Tadayoshi Hara, Jun'ichi Tsujii:
Evaluating Dependency Representations for Event Extraction. COLING 2010: 779-787 - [c187]Makoto Miwa, Rune Sætre, Yusuke Miyao, Jun'ichi Tsujii:
Entity-Focused Sentence Simplification for Relation Extraction. COLING 2010: 788-796 - [c186]Tingting Mu, Xinglong Wang, Jun'ichi Tsujii, Sophia Ananiadou:
Imbalanced Classification Using Dictionary-based Prototypes and Hierarchical Decision Rules for Entity Sense Disambiguation. COLING (Posters) 2010: 851-859 - [c185]Naoaki Okazaki, Jun'ichi Tsujii:
Simple and Efficient Algorithm for Approximate Dictionary Matching. COLING 2010: 851-859 - [c184]Yao-zhong Zhang, Takuya Matsuzaki, Jun'ichi Tsujii:
Forest-guided Supertagger Training. COLING 2010: 1281-1289 - [c183]Kun Yu, Yusuke Miyao, Xiangli Wang, Takuya Matsuzaki, Jun'ichi Tsujii:
Semi-automatically Developing Chinese HPSG Grammar from the Penn Chinese Treebank for Deep Parsing. COLING (Posters) 2010: 1417-1425 - [c182]Kenjiro Taura, Takuya Matsuzaki, Makoto Miwa, Yoshikazu Kamoshida, Daisaku Yokoyama, Nan Dun, Takeshi Shibata, Choi Sung Jun, Jun'ichi Tsujii:
Design and Implementation of GXP Make - A Workflow System Based on Make. eScience 2010: 214-221 - [c181]Hiroki Hanaoka, Hideki Mima, Jun'ichi Tsujii:
A Japanese Particle Corpus Built by Example-Based Annotation. LREC 2010 - [c180]Yoshinobu Kano, Rubén Dorado, Luke McCrohon, Sophia Ananiadou, Jun'ichi Tsujii:
U-Compare: An Integrated Language Resource Evaluation Platform Including a Comprehensive UIMA Resource Library. LREC 2010 - [c179]Yao-zhong Zhang, Takuya Matsuzaki, Jun'ichi Tsujii:
A Simple Approach for HPSG Supertagging Using Dependency Information. HLT-NAACL 2010: 645-648 - [c178]Yusuke Miyao, Alastair Butler, Kei Yoshimoto, Jun'ichi Tsujii:
A Modular Architecture for the Wide-Coverage Translation of Natural Language Texts into Predicate Logic Formulas. PACLIC 2010: 481-488 - [c177]Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jun'ichi Tsujii:
Event extraction for DNA methylation. Semantic Mining in Biomedicine 2010 - [c176]Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii:
An Analysis of gene/protein associations at PubMed scale. Semantic Mini