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2020 – today
- 2024
[j21]Damla Ovek
, Ozlem Keskin, Attila Gürsoy:
ProInterVal: Validation of Protein-Protein Interfaces through Learned Interface Representations. J. Chem. Inf. Model. 64(8): 2979-2987 (2024)- [j20]Fatma Cankara, Simge Senyuz, Ahenk Zeynep Sayin, Attila Gürsoy, Ozlem Keskin:
DiPPI: A Curated Data Set for Drug-like Molecules in Protein-Protein Interfaces. J. Chem. Inf. Model. 64(13): 5041-5051 (2024) - 2023
- [c4]Melisa Ece Zeylan, Attila Gürsoy, Simge Senyuz, Ozlem Keskin:
The interaction between mutated DYRK1A and APP suggests a potential target for vascular cognitive impairment. BIBM 2023: 1-7 - 2022
- [j19]Damla Ovek, Ameer Taweel, Zeynep Abali, Ece Tezsezen, Yunus Emre Koroglu, Chung-Jung Tsai, Ruth Nussinov, Ozlem Keskin, Attila Gürsoy:
SARS-CoV-2 Interactome 3D: A Web interface for 3D visualization and analysis of SARS-CoV-2-human mimicry and interactions. Bioinform. 38(5): 1455-1457 (2022) - [j18]Hansaim Lim, Chung-Jung Tsai, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy:
HMI-PRED 2.0: a biologist-oriented web application for prediction of host-microbe protein-protein interaction by interface mimicry. Bioinform. 38(21): 4962-4965 (2022) - 2020
- [j17]Jackson Weako, Abdullahi Ibrahim Uba, Ozlem Keskin, Attila Gürsoy, Kemal Yelekçi:
Identification of potential inhibitors of human methionine aminopeptidase (type II) for cancer therapy: Structure-based virtual screening, ADMET prediction and molecular dynamics studies. Comput. Biol. Chem. 86: 107244 (2020) - [p2]Farideh Halakou, Attila Gürsoy, Ozlem Keskin:
Embedding Alternative Conformations of Proteins in Protein-Protein Interaction Networks. Protein-Protein Interaction Networks 2020: 113-124
2010 – 2019
- 2019
- [j16]Cansu Dincer, Tugba Turkoglu Kaya, Ozlem Keskin, Attila Gürsoy, Nurcan Tuncbag:
3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients. PLoS Comput. Biol. 15(9) (2019) - 2018
- [j15]E. Sila Ozdemir, Attila Gürsoy, Ozlem Keskin:
Analysis of single amino acid variations in singlet hot spots of protein-protein interfaces. Bioinform. 34(17): i795-i801 (2018) - 2017
- [c3]Farideh Halakou, Attila Gürsoy, Emel Sen Kilic, Ozlem Keskin:
Topological, functional, and structural analyses of protein-protein interaction networks of breast cancer lung and brain metastases. CIBCB 2017: 1-7 - 2014
- [j14]Alper Baspinar, Engin Cukuroglu, Ruth Nussinov, Ozlem Keskin, Attila Gürsoy:
PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes. Nucleic Acids Res. 42(Webserver-Issue): 285-289 (2014) - [j13]Saliha Ece Acuner Ozbabacan, Attila Gürsoy, Ruth Nussinov, Ozlem Keskin:
The Structural Pathway of Interleukin 1 (IL-1) Initiated Signaling Reveals Mechanisms of Oncogenic Mutations and SNPs in Inflammation and Cancer. PLoS Comput. Biol. 10(2) (2014) - [c2]Deniz Demircioglu, Ozlem Keskin, Attila Gürsoy:
Modeling Structural Protein Interaction Networks for Betweenness Analysis. ISCIS 2014: 367-376 - 2012
- [j12]Billur Engin, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy:
A Strategy Based on Protein-Protein Interface Motifs May Help in Identifying Drug Off-Targets. J. Chem. Inf. Model. 52(8): 2273-2286 (2012) - [j11]Engin Cukuroglu, Attila Gürsoy, Ozlem Keskin:
HotRegion: a database of predicted hot spot clusters. Nucleic Acids Res. 40(Database-Issue): 829-833 (2012) - 2010
- [j10]Sibel Kalyoncu, Ozlem Keskin, Attila Gürsoy:
Interaction prediction and classification of PDZ domains. BMC Bioinform. 11: 357 (2010) - [j9]Shandar Ahmad, Ozlem Keskin, Kenji Mizuguchi, Akinori Sarai, Ruth Nussinov:
CCRXP: exploring clusters of conserved residues in protein structures. Nucleic Acids Res. 38(Web-Server-Issue): 398-401 (2010) - [j8]Nurcan Tuncbag, Ozlem Keskin, Attila Gürsoy:
HotPoint: hot spot prediction server for protein interfaces. Nucleic Acids Res. 38(Web-Server-Issue): 402-406 (2010)
2000 – 2009
- 2009
- [j7]Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gürsoy, Ruth Nussinov:
A survey of available tools and web servers for analysis of protein-protein interactions and interfaces. Briefings Bioinform. 10(3): 217-232 (2009) - [j6]Nurcan Tuncbag, Attila Gürsoy, Ozlem Keskin:
Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy. Bioinform. 25(12): 1513-1520 (2009) - [j5]Ibrahim Baris, Aytug Tuncel, Natali Ozber, Ozlem Keskin, I. Halil Kavakli:
Investigation of the Interaction between the Large and Small Subunits of Potato ADP-Glucose Pyrophosphorylase. PLoS Comput. Biol. 5(10) (2009) - [j4]Gozde Kar, Attila Gürsoy, Ozlem Keskin:
Human Cancer Protein-Protein Interaction Network: A Structural Perspective. PLoS Comput. Biol. 5(12) (2009) - 2008
- [j3]Emre Guney, Nurcan Tuncbag, Ozlem Keskin, Attila Gürsoy:
HotSprint: database of computational hot spots in protein interfaces. Nucleic Acids Res. 36(Database-Issue): 662-666 (2008) - [p1]Ozlem Keskin, Attila Gürsoy, Ruth Nussinov:
Principles of Protein Recognition and Properties of Protein-protein Interfaces. Protein-protein Interactions and Networks 2008: 53-65 - 2006
- [c1]Aytug Tuncel, I. Halil Kavakli, Ozlem Keskin:
Structure Prediction of Potato Large Subunit ADP - Glucose Pyrophosphorylase. BIOCOMP 2006: 315-321 - 2005
- [j2]A. Selim Aytuna, Attila Gürsoy, Ozlem Keskin:
Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces. Bioinform. 21(12): 2850-2855 (2005) - [j1]Utkan Ogmen, Ozlem Keskin, A. Selim Aytuna, Ruth Nussinov, Attila Gürsoy:
PRISM: protein interactions by structural matching. Nucleic Acids Res. 33(Web-Server-Issue): 331-336 (2005)
Coauthor Index
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