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Journal Articles
- 2023
[j8]Sean Upchurch
, Emilio Palumbo, Jeremy Adams, David Bujold, Guillaume Bourque, Jared Nedzel, Keenan Graham, Meenakshi S. Kagda, Pedro Assis, Benjamin C. Hitz, Emilio Righi, Roderic Guigó, Barbara J. Wold, Alvis Brazma, Julia Burchard, Joe Capka, Michael Cherry, Laura Clarke, Brian Craft, Manolis Dermitzakis, Mark Diekhans, John Dursi, Michael Sean Fitzsimons, Zac Flaming, Romina Garrido, Alfred Gil, Paul Godden, Matt Green, Mitch Guttman, Brian Haas, Max Haeussler, Bo Li, Sten Linnarsson, Adam Lipski, David Liu, Simonne Longerich, David Lougheed, Jonathan Manning, John C. Marioni, Christopher Meyer, Stephen B. Montgomery, Alyssa Morrow, Alfonso Muñoz-Pomer Fuentes, Jared L. Nedzel, David Nguyen, Kevin Osborn, Francis Ouellette, Irene Papatheodorou, Dmitri D. Pervouchine, Arun K. Ramani, Jordi Rambla, Bashir Sadjad, David Steinberg, Jeremiah Talkar, Timothy Tickle, Kathy Tzeng, Saman Vaisipour, Sean Watford, Barbara Wold, Zhenyu Zhang, Jing Zhu:
RNAget: an API to securely retrieve RNA quantifications. Bioinform. 39(4) (2023)- 2020
- [j7]Peng He, Brian A. Williams, Diane Trout, Georgi K. Marinov, Henry Amrhein, Libera Berghella, Say-Tar Goh, Ingrid Plajzer-Frick, Veena Afzal, Len A. Pennacchio, Diane E. Dickel, Axel Visel, Bing Ren, Ross C. Hardison, Yu Zhang, Barbara J. Wold:
The changing mouse embryo transcriptome at whole tissue and single-cell resolution. Nat. 583(7818): 760-767 (2020) - 2015
- [j6]Benedict Paten, Mark Diekhans, Brian J. Druker, Stephen H. Friend, Justin Guinney, Nadine Gassner, Mitchell Guttman, W. James Kent, Patrick Mantey, Adam A. Margolin, Matt Massie, Adam M. Novak, Frank A. Nothaft, Lior Pachter, David A. Patterson, Maciej Smuga-Otto, Joshua M. Stuart, Laura J. van't Veer, Barbara J. Wold, David Haussler:
The NIH BD2K center for big data in translational genomics. J. Am. Medical Informatics Assoc. 22(6): 1143-1147 (2015) - 2014
- [j5]Anna C. T. Abelin, Georgi K. Marinov, Brian A. Williams, Kenneth McCue, Barbara J. Wold:
A ratiometric-based measure of gene co-expression. BMC Bioinform. 15: 331 (2014) - 2006
- [j4]Joseph C. Roden, Brandon W. King, Diane Trout, Ali Mortazavi, Barbara J. Wold, Christopher E. Hart:
Mining gene expression data by interpreting principal components. BMC Bioinform. 7: 194 (2006) - [j3]Christopher E. Hart, Eric Mjolsness, Barbara J. Wold:
Connectivity in the Yeast Cell Cycle Transcription Network: Inferences from Neural Networks. PLoS Comput. Biol. 2(12) (2006) - 2003
- [j2]Bruce E. Shapiro, Andre Levchenko, Elliot M. Meyerowitz, Barbara J. Wold, Eric Mjolsness:
Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulations. Bioinform. 19(5): 677-678 (2003) - [j1]Ruye Wang, Lucas Scharenbroich, Christopher E. Hart, Barbara J. Wold, Eric Mjolsness:
Clustering analysis of microarray gene expression data by splitting algorithm. J. Parallel Distributed Comput. 63(7-8): 692-706 (2003)
Conference and Workshop Papers
- 1999
- [c1]Eric Mjolsness, Tobias Mann, Rebecca Castaño, Barbara J. Wold:
From Coexpression to Coregulation: An Approach to Inferring Transcriptional Regulation among Gene Classes from Large-Scale Expression Data. NIPS 1999: 928-934
Coauthor Index
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