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Mario Latendresse
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2020 – today
- 2023
- [j26]Mario Latendresse, Jeremiah P. Malerich, James Herson, Markus Krummenacker, Judy Szeto, Vi-Anh Vu, Nathan Collins, Peter B. Madrid:
SynRoute: A Retrosynthetic Planning Software. J. Chem. Inf. Model. 63(17): 5484-5495 (2023) - 2021
- [j25]Peter D. Karp, Peter E. Midford, Richard Billington, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Wai Kit Ong, Pallavi Subhraveti, Ron Caspi, Carol A. Fulcher, Ingrid M. Keseler, Suzanne M. Paley:
Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology. Briefings Bioinform. 22(1): 109-126 (2021)
2010 – 2019
- 2019
- [j24]Peter D. Karp, Richard Billington, Ron Caspi, Carol A. Fulcher, Mario Latendresse, Anamika Kothari, Ingrid M. Keseler, Markus Krummenacker, Peter E. Midford, Quang Ong, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti:
The BioCyc collection of microbial genomes and metabolic pathways. Briefings Bioinform. 20(4): 1085-1093 (2019) - 2018
- [j23]Mario Latendresse, Peter D. Karp:
Evaluation of reaction gap-filling accuracy by randomization. BMC Bioinform. 19(1): 53:1-53:13 (2018) - [j22]Peter D. Karp, Daniel S. Weaver, Mario Latendresse:
How accurate is automated gap filling of metabolic models? BMC Syst. Biol. 12(1): 73:1-73:11 (2018) - [j21]Ron Caspi, Richard Billington, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Peter E. Midford, Quang Ong, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti, Peter D. Karp:
The MetaCyc database of metabolic pathways and enzymes. Nucleic Acids Res. 46(Database-Issue): D633-D639 (2018) - 2017
- [j20]Ingrid M. Keseler, Amanda Mackie, Alberto Santos-Zavaleta, Richard Billington, César Bonavides-Martínez, Ron Caspi, Carol A. Fulcher, Socorro Gama-Castro, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne M. Paley, Martín Peralta-Gil, Pallavi Subhraveti, David A. Velázquez-Ramírez, Daniel S. Weaver, Julio Collado-Vides, Ian T. Paulsen, Peter D. Karp:
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12. Nucleic Acids Res. 45(Database-Issue): D543-D550 (2017) - 2016
- [j19]Peter D. Karp, Mario Latendresse, Suzanne M. Paley, Markus Krummenacker, Quang Ong, Richard Billington, Anamika Kothari, Daniel S. Weaver, Thomas J. Lee, Pallavi Subhraveti, Aaron Spaulding, Carol A. Fulcher, Ingrid M. Keseler, Ron Caspi:
Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology. Briefings Bioinform. 17(5): 877-890 (2016) - [j18]Ron Caspi, Richard Billington, Luciana Ferrer, Hartmut Foerster, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Pallavi Subhraveti, Daniel S. Weaver, Peter D. Karp:
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res. 44(Database-Issue): 471-480 (2016) - 2014
- [j17]Mario Latendresse, Markus Krummenacker, Peter D. Karp:
Optimal metabolic route search based on atom mappings. Bioinform. 30(14): 2043-2050 (2014) - [j16]Mario Latendresse:
Efficiently Gap-Filling Reaction Networks. BMC Bioinform. 15: 225 (2014) - [j15]Martin Beaudry, Danny Dubé, Maxime Dubé, Mario Latendresse, Pascal Tesson:
Conservative groupoids recognize only regular languages. Inf. Comput. 239: 13-28 (2014) - [j14]Ron Caspi, Tomer Altman, Richard Billington, Kate Dreher, Hartmut Foerster, Carol A. Fulcher, Timothy A. Holland, Ingrid M. Keseler, Anamika Kothari, Aya Kubo, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Pallavi Subhraveti, Daniel S. Weaver, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp:
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Res. 42(Database-Issue): 459-471 (2014) - 2013
- [j13]Ingrid M. Keseler, Amanda Mackie, Martín Peralta-Gil, Alberto Santos-Zavaleta, Socorro Gama-Castro, César Bonavides-Martínez, Carol A. Fulcher, Araceli M. Huerta, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne M. Paley, Imke Schröder, Alexander Glennon Shearer, Pallavi Subhraveti, Michael Travers, Deepika Weerasinghe, Verena Weiss, Julio Collado-Vides, Robert P. Gunsalus, Ian T. Paulsen, Peter D. Karp:
EcoCyc: fusing model organism databases with systems biology. Nucleic Acids Res. 41(Database-Issue): 605-612 (2013) - 2012
- [j12]Mario Latendresse, Markus Krummenacker, Miles Trupp, Peter D. Karp:
Construction and completion of flux balance models from pathway databases. Bioinform. 28(3): 388-396 (2012) - [j11]Suzanne M. Paley, Mario Latendresse, Peter D. Karp:
Regulatory network operations in the Pathway Tools software. BMC Bioinform. 13: 243 (2012) - [j10]Mario Latendresse, Jeremiah P. Malerich, Mike Travers, Peter D. Karp:
Accurate Atom-Mapping Computation for Biochemical Reactions. J. Chem. Inf. Model. 52(11): 2970-2982 (2012) - [j9]Ron Caspi, Tomer Altman, Kate Dreher, Carol A. Fulcher, Pallavi Subhraveti, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Anuradha Pujar, Alexander Glennon Shearer, Michael Travers, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp:
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res. 40(Database-Issue): 742-753 (2012) - [c9]Danny Dubé, Mario Latendresse, Pascal Tesson:
Conservative Groupoids Recognize Only Regular Languages. LATA 2012: 216-227 - 2011
- [j8]Mario Latendresse, Peter D. Karp:
Web-Based Metabolic Network Visualization with a Zooming User Interface. BMC Bioinform. 12: 176 (2011) - [j7]Ingrid M. Keseler, Julio Collado-Vides, Alberto Santos-Zavaleta, Martín Peralta-Gil, Socorro Gama-Castro, Luis Muñiz-Rascado, César Bonavides-Martínez, Suzanne M. Paley, Markus Krummenacker, Tomer Altman, Pallavi Kaipa, Aaron Spaulding, John Pacheco, Mario Latendresse, Carol A. Fulcher, Malabika Sarker, Alexander Glennon Shearer, Amanda Mackie, Ian T. Paulsen, Robert P. Gunsalus, Peter D. Karp:
EcoCyc: a comprehensive database of Escherichia coli biology. Nucleic Acids Res. 39(Database-Issue): 583-590 (2011) - [c8]Peter D. Karp, Mario Latendresse, Suzanne M. Paley:
Using cellular network diagrams to interpret large-scale datasets: past progress and future challenges. Human Vision and Electronic Imaging 2011: 78650G - 2010
- [j6]Peter D. Karp, Suzanne M. Paley, Markus Krummenacker, Mario Latendresse, Joseph M. Dale, Thomas J. Lee, Pallavi Kaipa, Fred Gilham, Aaron Spaulding, Liviu Popescu, Tomer Altman, Ian T. Paulsen, Ingrid M. Keseler, Ron Caspi:
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology. Briefings Bioinform. 11(1): 40-79 (2010) - [j5]Mario Latendresse, Peter D. Karp:
An advanced web query interface for biological databases. Database J. Biol. Databases Curation 2010 (2010) - [j4]Ron Caspi, Tomer Altman, Joseph M. Dale, Kate Dreher, Carol A. Fulcher, Fred Gilham, Pallavi Kaipa, Athikkattuvalasu S. Karthikeyan, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Suzanne M. Paley, Liviu Popescu, Anuradha Pujar, Alexander Glennon Shearer, Peifen Zhang, Peter D. Karp:
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res. 38(Database-Issue): 473-479 (2010)
2000 – 2009
- 2008
- [j3]Ron Caspi, Hartmut Foerster, Carol A. Fulcher, Pallavi Kaipa, Markus Krummenacker, Mario Latendresse, Suzanne M. Paley, Seung Yon Rhee, Alexander Glennon Shearer, Christophe Tissier, Thomas C. Walk, Peifen Zhang, Peter D. Karp:
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Res. 36(Database-Issue): 623-631 (2008) - 2007
- [c7]Mario Latendresse:
Simple and efficient compilation of list comprehension in common Lisp. ILC 2007: 12 - 2005
- [j2]Mario Latendresse, Marc Feeley:
Generation of fast interpreters for Huffman compressed bytecode. Sci. Comput. Program. 57(3): 295-317 (2005) - [c6]Mario Latendresse:
Masquerade Detection via Customized Grammars. DIMVA 2005: 141-159 - 2004
- [c5]Mario Latendresse:
Rewrite Systems for Symbolic Evaluation of C-like Preprocessing. CSMR 2004: 165-173 - 2003
- [c4]Mario Latendresse:
Fast Symbolic Evaluation of C/C++ Preprocessing Using Conditional Value. CSMR 2003: 170- - [c3]Mario Latendresse, Marc Feeley:
Generation of fast interpreters for Huffman compressed bytecode. IVME 2003: 32-40 - [c2]Mario Latendresse:
RegReg: a Lightweight Generator of Robust Parsers for Irregular Languages. WCRE 2003: 206-215 - 2001
- [c1]Robert Bruce Findler, Mario Latendresse, Matthias Felleisen:
Behavioral contracts and behavioral subtyping. ESEC / SIGSOFT FSE 2001: 229-236
1990 – 1999
- 1992
- [j1]Guy Lapalme, Mario Latendresse:
A Debugging Environment for Lazy Functional Languages. LISP Symb. Comput. 5(3): 271-287 (1992)
Coauthor Index
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