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ORCIDSimon Kasif
Person information
- affiliation: Boston University, USA
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2020 – today
- 2020
[i4]Simon Kasif:
Artificial Tikkun Olam: AI Can Be Our Best Friend in Building an Open Human-Computer Society. CoRR abs/2010.12015 (2020)
2010 – 2019
- 2016
- [j36]Yi-Chien Chang
, Zhenjun Hu, John Rachlin, Brian P. Anton, Simon Kasif, Richard J. Roberts, Martin Steffen:
COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps. Nucleic Acids Res. 44(Database-Issue): 330-335 (2016) - 2014
- [i3]Arthur L. Delcher, Adam J. Grove, Simon Kasif, Judea Pearl:
Logarithmic-Time Updates and Queries in Probabilistic Networks. CoRR abs/1408.1479 (2014) - 2011
- [j35]Richard J. Roberts, Yi-Chien Chang, Zhenjun Hu, John Rachlin, Brian P. Anton, Revonda M. Pokrzywa, Han-Pil Choi, Lina L. Faller, Jyotsna Guleria, Genevieve Housman, Niels Klitgord, Varun Mazumdar, Mark G. McGettrick, Lais Osmani, Rajeswari Swaminathan, Kevin R. Tao, Stanley Letovsky, Dennis Vitkup, Daniel Segrè, Steven L. Salzberg, Charles DeLisi, Martin Steffen, Simon Kasif:
COMBREX: a project to accelerate the functional annotation of prokaryotic genomes. Nucleic Acids Res. 39(Database-Issue): 11-14 (2011) - 2010
- [j34]Antonina Mitrofanova, Samantha Kleinberg, Jane Carlton, Simon Kasif, Bud Mishra:
Predicting malaria interactome classifications from time-course transcriptomic data along the intraerythrocytic developmental cycle. Artif. Intell. Medicine 49(3): 167-176 (2010)
2000 – 2009
- 2009
- [j33]Dikla Dotan-Cohen, Simon Kasif, Avraham A. Melkman:
Seeing the forest for the trees: using the Gene Ontology to restructure hierarchical clustering. Bioinform. 25(14): 1789-1795 (2009) - [j32]Peter J. Park, Sek Won Kong, Toma Tebaldi, Weil R. Lai, Simon Kasif, Isaac S. Kohane:
Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance. Bioinform. 25(23): 3121-3127 (2009) - 2008
- [j31]Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, Eric D. Kolaczyk:
Integration of relational and hierarchical network information for protein function prediction. BMC Bioinform. 9 (2008) - [j30]John H. Reif, Simon Kasif, Deepak Sherlekar:
Formula dissection: A parallel algorithm for constraint satisfaction. Comput. Math. Appl. 55(6): 1170-1177 (2008) - [c28]Antonina Mitrofanova, Samantha Kleinberg, Jane Carlton, Simon Kasif, Bud Mishra:
Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic Profiles. BIBM 2008: 278-283 - [c27]Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, David Gold, Eric D. Kolaczyk:
Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function Prediction. BIBM 2008: 411-416 - 2007
- [j29]Dikla Dotan-Cohen, Avraham A. Melkman, Simon Kasif:
Hierarchical tree snipping: clustering guided by prior knowledge. Bioinform. 23(24): 3335-3342 (2007) - 2006
- [j28]Noga Alon, Vera Asodi, Charles Cantor, Simon Kasif, John Rachlin:
Multi-Node Graphs: A Framework for Multiplexed Biological Assays. J. Comput. Biol. 13(10): 1659-1672 (2006) - 2005
- [j27]Yu Zheng, Brian P. Anton, Richard J. Roberts, Simon Kasif:
Phylogenetic detection of conserved gene clusters in microbial genomes. BMC Bioinform. 6: 243 (2005) - [j26]John Rachlin, Chunming Ding, Charles Cantor, Simon Kasif:
MuPlex: multi-objective multiplex PCR assay design. Nucleic Acids Res. 33(Web-Server-Issue): 544-547 (2005) - [j25]Chang-Jiun Wu, Simon Kasif:
GEMS: a web server for biclustering analysis of expression data. Nucleic Acids Res. 33(Web-Server-Issue): 596-599 (2005) - [c26]Joseph D. Szustakowski, Simon Kasif, Zhiping Weng:
Less is more: towards an optimal universal description of protein folds. ECCB/JBI 2005: 71 - [e1]Satoru Miyano, Jill P. Mesirov, Simon Kasif, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings. Lecture Notes in Computer Science 3500, Springer 2005, ISBN 3-540-25866-3 [contents] - 2004
- [j24]Nathan O. Stitziel, T. Andrew Binkowski, Yan Yuan Tseng, Simon Kasif, Jie Liang:
topoSNP: a topographic database of non-synonymous single nucleotide polymorphisms with and without known disease association. Nucleic Acids Res. 32(Database-Issue): 520-522 (2004) - [j23]Noga Alon, Richard Beigel, Simon Kasif, Steven Rudich, Benny Sudakov:
Learning a Hidden Matching. SIAM J. Comput. 33(2): 487-501 (2004) - 2003
- [j22]Jie Wu, Simon Kasif, Charles DeLisi:
Identification of functional links between genes using phylogenetic profiles. Bioinform. 19(12): 1524-1530 (2003) - [j21]Yang Su, T. M. Murali, Vladimir Pavlovic, Michael Schaffer, Simon Kasif:
RankGene: identification of diagnostic genes based on expression data. Bioinform. 19(12): 1578-1579 (2003) - [c25]Stanley Letovsky, Simon Kasif:
Predicting protein function from protein/protein interaction data: a probabilistic approach. ISMB (Supplement of Bioinformatics) 2003: 197-204 - [c24]T. M. Murali, Simon Kasif:
Extracting Conserved Gene Expression Motifs from Gene Expression Data. Pacific Symposium on Biocomputing 2003: 77-88 - 2002
- [j20]Vladimir Pavlovic, Ashutosh Garg, Simon Kasif:
A Bayesian framework for combining gene predictions. Bioinform. 18(1): 19-27 (2002) - [c23]Noga Alon, Richard Beigel, Simon Kasif, Steven Rudich, Benny Sudakov:
Learning a Hidden Matching. FOCS 2002: 197- - 2001
- [c22]Richard Beigel, Noga Alon, Simon Kasif, Mehmet Serkan Apaydin, Lance Fortnow:
An optimal procedure for gap closing in whole genome shotgun sequencing. RECOMB 2001: 22-30 - 2000
- [j19]Deyou Cai, Arthur L. Delcher, Ben Kao, Simon Kasif:
Modeling splice sites with Bayes networks. Bioinform. 16(2): 152-158 (2000)
1990 – 1999
- 1998
- [j18]Simon Kasif, Steven Salzberg, David L. Waltz, John Rachlin, David W. Aha:
A Probabilistic Framework for Memory-Based Reasoning. Artif. Intell. 104(1-2): 287-311 (1998) - 1997
- [j17]Simon Kasif:
Towards a Constraint-Based Engineering Framework for Algorithm Design and Application. Constraints An Int. J. 2(1): 75-82 (1997) - 1996
- [j16]Simon Kasif:
Towards a Constraint-Based Engineering Framework for Algorithm Design and Application. ACM Comput. Surv. 28(4es): 66 (1996) - [j15]Arthur L. Delcher, Adam J. Grove, Simon Kasif, Judea Pearl:
Logarithmic-Time Updates and Queries in Probabilistic Networks. J. Artif. Intell. Res. 4: 37-59 (1996) - [j14]David G. Heath, Simon Kasif, S. Rao Kosaraju, Steven Salzberg, Gregory F. Sullivan:
Learning nested concept classes with limited storage. J. Exp. Theor. Artif. Intell. 8(2): 129-147 (1996) - [c21]Truxton Fulton, Simon Kasif, Steven Salzberg, David L. Waltz:
Local Induction of Decision Trees: Towards Interactive Data Mining. KDD 1996: 14-19 - [i2]Arthur L. Delcher, Adam J. Grove, Simon Kasif, Judea Pearl:
Logarithmic-Time Updates and Queries in Probabilistic Networks. CoRR cs.AI/9602102 (1996) - 1995
- [j13]Arthur L. Delcher, Simon Kasif:
Term Matching on a Mesh-Connected Array of Processors. Ann. Math. Artif. Intell. 14(2-4): 177-186 (1995) - [j12]David L. Waltz, Simon Kasif:
On Reasoning From Data. ACM Comput. Surv. 27(3): 356-359 (1995) - [j11]Steven Salzberg, Arthur L. Delcher, David G. Heath, Simon Kasif:
Best-Case Results for Nearest-Neighbor Learning. IEEE Trans. Pattern Anal. Mach. Intell. 17(6): 599-608 (1995) - [c20]Truxton Fulton, Simon Kasif, Steven Salzberg:
Efficient Algorithms for Finding Multi-way Splits for Decision Trees. ICML 1995: 244-251 - [c19]Arthur L. Delcher, Adam J. Grove, Simon Kasif, Judea Pearl:
Logarithmic-Time Updates and Queries in Probabilistic Networks. UAI 1995: 116-124 - 1994
- [j10]Simon Kasif, Arthur L. Delcher:
Local Consistency in Parallel Constraint Satisfaction Networks. Artif. Intell. 69(1-2): 307-327 (1994) - [j9]Sreerama K. Murthy, Simon Kasif, Steven Salzberg:
A System for Induction of Oblique Decision Trees. J. Artif. Intell. Res. 2: 1-32 (1994) - [c18]Jonathan Bright, Simon Kasif, Lewis Stiller:
Exploiting Algebraic Structure in Parallel State Space Search. AAAI 1994: 1341-1346 - [c17]John Rachlin, Simon Kasif, Steven Salzberg, David W. Aha:
Towards a Better Understanding of Memory-based Reasoning Systems. ICML 1994: 242-250 - [i1]Sreerama K. Murthy, Simon Kasif, Steven Salzberg:
A System for Induction of Oblique Decision Trees. CoRR abs/cs/9408103 (1994) - 1993
- [j8]Simon Kasif, Saibal Banerjee, Arthur L. Delcher, Gregory F. Sullivan:
Some Results on the Computational Complexity of Symmetric Connectionist Networks. Ann. Math. Artif. Intell. 9(3-4): 327-344 (1993) - [j7]David G. Heath, Simon Kasif:
The Complexity of Finding Minimal Voronoi Covers with Applications to Machine Learning. Comput. Geom. 3: 289-305 (1993) - [c16]Arthur L. Delcher, Simon Kasif, Harry R. Goldberg, William H. Hsu:
Probabilistic Prediction of Protein Secondary Structure Using Causal Networks (Extended Abstract). AAAI 1993: 316-321 - [c15]Sreerama K. Murthy, Simon Kasif, Steven Salzberg, Richard Beigel:
OC1: A Randomized Induction of Oblique Decision Trees. AAAI 1993: 322-327 - [c14]David G. Heath, Simon Kasif, Steven Salzberg:
Induction of Oblique Decision Trees. IJCAI 1993: 1002-1007 - [c13]Arthur L. Delcher, Simon Kasif, Harry R. Goldberg, William H. Hsu:
Protein Secondary-Structure Modeling with Probabilistic Networks. ISMB 1993: 109-117 - [c12]Simon Kasif, Arthur L. Delcher:
Local Consistency in Parallel Constraint-Satisfaction Networks. PPCP 1993: 139-145 - 1992
- [j6]Arthur L. Delcher, Simon Kasif:
Efficient Parallel Term Matching and Anti-Unification. J. Autom. Reason. 9(3): 391-406 (1992) - [c11]Arthur L. Delcher, Simon Kasif:
Improved Decision-Making in Game Trees: Recovering from Pathology. AAAI 1992: 513-518 - 1991
- [c10]Steven Salzberg, Arthur L. Delcher, David G. Heath, Simon Kasif:
Learning with a Helpful Teacher. IJCAI 1991: 705-711 - [c9]David G. Heath, Simon Kasif, S. Rao Kosaraju, Steven Salzberg, Gregory F. Sullivan:
Learning Nested Concept Classes with Limited Storage. IJCAI 1991: 777-782 - 1990
- [j5]Simon Kasif:
On the Parallel Complexity of Discrete Relaxation in Constraint Satisfaction Networks. Artif. Intell. 45(3): 275-286 (1990) - [c8]Arthur L. Delcher, Simon Kasif:
Efficient Parallel Term Matching and Anti-Unification. ICLP 1990: 355-369
1980 – 1989
- 1989
- [j4]Arthur L. Delcher, Simon Kasif:
Some Results on the Complexity of Exploiting Data Dependency in Parallel Logic Programs. J. Log. Program. 6(3): 229-241 (1989) - [c7]Simon Kasif:
Parallel Solutions to Constraint Satisfaction Problems. KR 1989: 180-188 - 1986
- [j3]Simon Kasif:
Control and data driven execution of logic programs: A comparison. Int. J. Parallel Program. 15(1): 73-99 (1986) - [c6]Simon Kasif:
On the Parallel Complexity of Some Constraint Satisfaction Problems. AAAI 1986: 349-353 - 1985
- [c5]Simon Kasif, Jack Minker:
The Intelligent Channel: A Scheme for Result Sharing in Logic Programs. IJCAI 1985: 29-31 - 1983
- [j2]Simon Kasif, Les Kitchen, Azriel Rosenfeld:
A hough transform technique for subgraph isomorphism. Pattern Recognit. Lett. 2(2): 83-88 (1983) - [j1]Simon Kasif, Azriel Rosenfeld:
Pyramid linking is a special case of ISODATA. IEEE Trans. Syst. Man Cybern. 13(1): 84-85 (1983) - [c4]Simon Kasif, Madhur Kohli, Jack Minker:
PRISM - A Parallel Inference System for Problem Solving. Logic Programming Workshop 1983: 123-152 - [c3]Simon Kasif, Madhur Kohli, Jack Minker:
PRISM: A Parallel Inference System for Problem Solving. IJCAI 1983: 544-546 - 1982
- [c2]Norbert Eisinger, Simon Kasif, Jack Minker:
Logic Programming: A Parallel Approach. ICLP 1982: 71-77 - [c1]Upen S. Chakravarthy, Simon Kasif, Madhur Kohli, Jack Minker, D. Cao:
Logic Programming on ZMOB: A Highly Parallel Machine. ICPP 1982: 347-349
Coauthor Index
aka: Steven L. Salzberg
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