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ORCIDPavel A. Pevzner
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- affiliation: University of California, San Diego, USA
- award (2018): Paris Kanellakis Award
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2020 – today
- 2022
[j75]Sorin Istrail, Pavel A. Pevzner, Fengzhu Sun, Martin Vingron:
Special Issue: Professor Michael Waterman's 80th Birthday, Part 1. J. Comput. Biol. 29(7): 599-600 (2022)- [j74]Pavel A. Pevzner, Martin Vingron, Christian M. Reidys, Fengzhu Sun, Sorin Istrail:
Michael Waterman's Contributions to Computational Biology and Bioinformatics. J. Comput. Biol. 29(7): 601-615 (2022) - 2021
- [j73]Tatiana Dvorkina, Olga Kunyavskaya, Andrey V. Bzikadze, Ivan V. Alexandrov, Pavel A. Pevzner:
CentromereArchitect: inference and analysis of the architecture of centromeres. Bioinform. 37(Supplement): 196-204 (2021) - [j72]Vinnu Bhardwaj
, Pavel A. Pevzner, Cyrus Rashtchian, Yana Safonova:
Trace Reconstruction Problems in Computational Biology. IEEE Trans. Inf. Theory 67(6): 3295-3314 (2021) - 2020
- [j71]Dmitry Antipov, Mikhail Raiko, Alla L. Lapidus, Pavel A. Pevzner:
Metaviral SPAdes: assembly of viruses from metagenomic data. Bioinform. 36(14): 4126-4129 (2020) - [j70]Alla Mikheenko, Andrey V. Bzikadze, Alexey A. Gurevich, Karen H. Miga, Pavel A. Pevzner:
TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats. Bioinform. 36(Supplement-1): i75-i83 (2020) - [j69]Tatiana Dvorkina, Andrey V. Bzikadze, Pavel A. Pevzner:
The string decomposition problem and its applications to centromere analysis and assembly. Bioinform. 36(Supplement-1): i93-i101 (2020) - [j68]Vinnu Bhardwaj, Massimo Franceschetti, Ramesh Rao, Pavel A. Pevzner, Yana Safonova:
Automated analysis of immunosequencing datasets reveals novel immunoglobulin D genes across diverse species. PLoS Comput. Biol. 16(4) (2020) - [c77]Anton Bankevich, Pavel A. Pevzner:
MosaicFlye: Resolving Long Mosaic Repeats Using Long Reads. RECOMB 2020: 226-228 - [i2]Vinnu Bhardwaj, Pavel A. Pevzner, Cyrus Rashtchian, Yana Safonova:
Trace Reconstruction Problems in Computational Biology. CoRR abs/2010.06083 (2020)
2010 – 2019
- 2019
- [j67]Ivan Tolstoganov, Anton Bankevich, Zhoutao Chen, Pavel A. Pevzner:
cloudSPAdes: assembly of synthetic long reads using de Bruijn graphs. Bioinform. 35(14): i61-i70 (2019) - [c76]Pavel A. Pevzner:
Bioinformatics: a Servant or the Queen of Molecular Biology? BIBM 2019: 3-4 - [c75]Bahar Behsaz, Hosein Mohimani, Alexey A. Gurevich, Andrey D. Prjibelski, Mark F. Fisher, Larry Smarr, Pieter C. Dorrestein, Joshua S. Mylne, Pavel A. Pevzner:
De Novo Peptide Sequencing Reveals a Vast Cyclopeptidome in Human Gut and Other Environments. RECOMB 2019: 289-291 - 2018
- [c74]Anton Bankevich, Pavel A. Pevzner:
Long Reads Enable Accurate Estimates of Complexity of Metagenomes. RECOMB 2018: 1-20 - [c73]Mikhail Kolmogorov, Jeffrey Yuan, Yu Lin, Pavel A. Pevzner:
Assembly of Long Error-Prone Reads Using Repeat Graphs. RECOMB 2018: 261-262 - 2017
- [j66]Mikhail Kolmogorov, Eamonn Kennedy, Zhuxin Dong, Gregory Timp, Pavel A. Pevzner:
Single-molecule protein identification by sub-nanopore sensors. PLoS Comput. Biol. 13(5) (2017) - [c72]Alexander Shlemov, Sergey Bankevich, Andrey V. Bzikadze, Yana Safonova, Pavel A. Pevzner:
Reconstructing Antibody Repertoires from Error-Prone Immunosequencing Datasets. RECOMB 2017: 396-397 - 2016
- [j65]Dmitry Antipov, Anton I. Korobeynikov, Jeffrey S. McLean, Pavel A. Pevzner:
hybridSPAdes: an algorithm for hybrid assembly of short and long reads. Bioinform. 32(7): 1009-1015 (2016) - [j64]Kira Vyatkina, Si Wu, Lennard J. Dekker, Martijn M. VanDuijn, Xiaowen Liu, Nikola Tolic, Theo M. Luider, Ljiljana Pasa-Tolic, Pavel A. Pevzner:
Top-down analysis of protein samples by de novo sequencing techniques. Bioinform. 32(18): 2753-2759 (2016) - [j63]Dmitry Antipov, Nolan Hartwick, Max W. Shen, Mikhail Raiko, Alla L. Lapidus, Pavel A. Pevzner:
plasmidSPAdes: assembling plasmids from whole genome sequencing data. Bioinform. 32(22): 3380-3387 (2016) - [j62]Stefano Bonissone, Pavel A. Pevzner:
Immunoglobulin Classification Using the Colored Antibody Graph. J. Comput. Biol. 23(6): 483-494 (2016) - [j61]Yu Lin, Jeffrey Yuan, Mikhail Kolmogorov, Max W. Shen, Mark Chaisson, Pavel A. Pevzner:
Assembly of long error-prone reads using de Bruijn graphs. Proc. Natl. Acad. Sci. USA 113(52): E8396-E8405 (2016) - [c71]Sergey Nurk, Dmitry Meleshko, Anton I. Korobeynikov, Pavel A. Pevzner:
metaSPAdes: A New Versatile de novo Metagenomics Assembler. RECOMB 2016: 258 - [c70]Yu Lin, Max W. Shen, Jeffrey Yuan, Mark Chaisson, Pavel A. Pevzner:
Assembly of Long Error-Prone Reads Using de Bruijn Graphs. RECOMB 2016: 265 - [i1]Mikhail Kolmogorov, Eamonn Kennedy, Zhuxin Dong, Gregory Timp, Pavel A. Pevzner:
Single-Molecule Protein Identification by Sub-Nanopore Sensors. CoRR abs/1604.02270 (2016) - 2015
- [j60]Yana Safonova, Stefano Bonissone, Eugene Kurpilyansky, Ekaterina Starostina, Alla L. Lapidus, Jeremy Stinson, Laura DePalatis, Wendy Sandoval, Jennie Lill, Pavel A. Pevzner:
IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis. Bioinform. 31(12): 53-61 (2015) - [j59]Irina Vasilinetc, Andrey D. Prjibelski, Alexey A. Gurevich, Anton I. Korobeynikov, Pavel A. Pevzner:
Assembling short reads from jumping libraries with large insert sizes. Bioinform. 31(20): 3262-3268 (2015) - [j58]Phillip E. C. Compeau, Pavel A. Pevzner:
Life after MOOCs. Commun. ACM 58(10): 41-44 (2015) - [j57]Yana Safonova, Anton Bankevich, Pavel A. Pevzner:
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes. J. Comput. Biol. 22(6): 528-545 (2015) - [c69]Stefano Bonissone, Pavel A. Pevzner:
Immunoglobulin Classification Using the Colored Antibody Graph. RECOMB 2015: 44-59 - 2014
- [j56]Andrey D. Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey A. Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son K. Pham, Anton I. Korobeynikov, Alla L. Lapidus, Pavel A. Pevzner:
ExSPAnder: a universal repeat resolver for DNA fragment assembly. Bioinform. 30(12): 293-301 (2014) - [c68]Yana Safonova, Anton Bankevich, Pavel A. Pevzner:
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes. RECOMB 2014: 265-279 - [c67]Yu Lin, Pavel A. Pevzner:
Manifold de Bruijn Graphs. WABI 2014: 296-310 - [e8]Alexander S. Kulikov, Sergei O. Kuznetsov, Pavel A. Pevzner:
Combinatorial Pattern Matching - 25th Annual Symposium, CPM 2014, Moscow, Russia, June 16-18, 2014. Proceedings. Lecture Notes in Computer Science 8486, Springer 2014, ISBN 978-3-319-07565-5 [contents] - 2013
- [j55]Natalie Castellana, Andrey Lushnikov, Piotr Rotkiewicz, Natasha Sefcovic, Pavel A. Pevzner, Adam Godzik, Kira Vyatkina:
MORPH-PRO: a novel algorithm and web server for protein morphing. Algorithms Mol. Biol. 8: 19 (2013) - [j54]Kyowon Jeong, Sangtae Kim, Pavel A. Pevzner:
UniNovo: a universal tool for de novo peptide sequencing. Bioinform. 29(16): 1953-1962 (2013) - [j53]Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev:
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly. J. Comput. Biol. 20(4): 359-371 (2013) - [j52]Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Scott R. Clingenpeel, Tanja Woyke, Jeffrey S. McLean, Roger Lasken, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner:
Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products. J. Comput. Biol. 20(10): 714-737 (2013) - [c66]Kyowon Jeong, Sangtae Kim, Pavel A. Pevzner:
UniNovo: A Universal Tool for de Novo Peptide Sequencing. RECOMB 2013: 100-117 - [c65]Xiaowen Liu, Shawna Hengel, Si Wu, Nikola Tolic, Ljiljana Pasa-Tolic, Pavel A. Pevzner:
Identification of Ultramodified Proteins Using Top-Down Spectra. RECOMB 2013: 132-144 - [c64]Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelsky, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey S. McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner:
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. RECOMB 2013: 158-170 - 2012
- [j51]Roy Ronen, Christina Boucher, Hamidreza Chitsaz, Pavel A. Pevzner:
SEQuel: improving the accuracy of genome assemblies. Bioinform. 28(12): 188-196 (2012) - [j50]Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son K. Pham, Andrey D. Prjibelski, Alex Pyshkin, Alexander Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner:
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing. J. Comput. Biol. 19(5): 455-477 (2012) - [c63]Pavel A. Pevzner:
Keynote: De novo sequencing of novel peptide antibiotics by tandem mass spectrometry. ICCABS 2012: 1 - [c62]Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev:
Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly. RECOMB 2012: 200-212 - [c61]Nikolay Vyahhi, Alex Pyshkin, Son K. Pham, Pavel A. Pevzner:
From de Bruijn Graphs to Rectangle Graphs for Genome Assembly. WABI 2012: 249-261 - [c60]Natalie Castellana, Andrey Lushnikov, Piotr Rotkiewicz, Natasha Sefcovic, Pavel A. Pevzner, Adam Godzik, Kira Vyatkina:
MORPH-PRO: A Novel Algorithm and Web Server for Protein Morphing. WABI 2012: 262-273 - [c59]Hosein Mohimani, Sangtae Kim, Pavel A. Pevzner:
MS-DPR: An Algorithm for Computing Statistical Significance of Spectral Identifications of Non-linear Peptides. WABI 2012: 301-313 - 2011
- [j49]Paul Medvedev, Eric Scott, Boyko Kakaradov, Pavel A. Pevzner:
Error correction of high-throughput sequencing datasets with non-uniform coverage. Bioinform. 27(13): 137-141 (2011) - [j48]Pavel A. Pevzner, Ron Shamir:
Preface: 2nd Satellite Meeting on Bioinformatics Education, Research in Computational Molecular Biology (RECOMB-BE 2010). J. Comput. Biol. 18(7): 865 (2011) - [j47]Hosein Mohimani, Wei-Ting Liu, Yu-Liang Yang, Susana P. Gaudêncio, William Fenical, Pieter C. Dorrestein, Pavel A. Pevzner:
Multiplex De Novo Sequencing of Peptide Antibiotics. J. Comput. Biol. 18(11): 1371-1381 (2011) - [j46]Paul Medvedev, Son K. Pham, Mark Chaisson, Glenn Tesler, Pavel A. Pevzner:
Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers. J. Comput. Biol. 18(11): 1625-1634 (2011) - [c58]Paul Medvedev, Son K. Pham, Mark Chaisson, Glenn Tesler, Pavel A. Pevzner:
Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers. RECOMB 2011: 238-251 - [c57]Hosein Mohimani, Wei-Ting Liu, Yu-Liang Yang, Susana P. Gaudêncio, William Fenical, Pieter C. Dorrestein, Pavel A. Pevzner:
Multiplex De Novo Sequencing of Peptide Antibiotics. RECOMB 2011: 267-281 - [c56]Julio Ng, Amihood Amir, Pavel A. Pevzner:
Blocked Pattern Matching Problem and Its Applications in Proteomics. RECOMB 2011: 298-319 - 2010
- [j45]Son K. Pham, Pavel A. Pevzner:
DRIMM-Synteny: decomposing genomes into evolutionary conserved segments. Bioinform. 26(20): 2509-2516 (2010) - [j44]Max A. Alekseyev, Qian Peng, Pavel A. Pevzner, Glenn Tesler:
Decoding the Genomic Architecture of Mammalian and Plant Genomes: Synteny Blocks and Large-scale Duplications. Commun. Inf. Syst. 10(1): 1-22 (2010) - [c55]Bernard M. E. Moret, Webb Miller, Pavel A. Pevzner, David Sankoff:
Session Introduction. Pacific Symposium on Biocomputing 2010: 1-2 - [c54]Max A. Alekseyev, Pavel A. Pevzner:
Limited Lifespan of Fragile Regions in Mammalian Evolution. RECOMB-CG 2010: 198-215 - [c53]Kyowon Jeong, Sangtae Kim, Nuno Bandeira, Pavel A. Pevzner:
Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra. RECOMB 2010: 208-232
2000 – 2009
- 2009
- [c52]Bernard M. E. Moret, Webb Miller, Pavel A. Pevzner, David Sankoff:
Session Introduction. Pacific Symposium on Biocomputing 2009: 111-113 - [c51]Qian Peng, Max A. Alekseyev, Glenn Tesler, Pavel A. Pevzner:
Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes. WABI 2009: 220-232 - 2008
- [j43]Max A. Alekseyev, Pavel A. Pevzner:
Multi-break rearrangements and chromosomal evolution. Theor. Comput. Sci. 395(2-3): 193-202 (2008) - [c50]Nuno Bandeira, Jesper V. Olsen, Matthias Mann, Pavel A. Pevzner:
Multi-spectra peptide sequencing and its applications to multistage mass spectrometry. ISMB 2008: 416-423 - [c49]Nuno Bandeira, Julio Ng, Dario Meluzzi, Roger G. Linington, Pieter C. Dorrestein, Pavel A. Pevzner:
De Novo Sequencing of Nonribosomal Peptides. RECOMB 2008: 181-195 - 2007
- [j42]Sorin Istrail, Pavel A. Pevzner, Ron Shamir:
Preface. Discret. Appl. Math. 155(6-7): 673-674 (2007) - [j41]Richard M. Karp, Ming Li, Pavel A. Pevzner, Ron Shamir:
Special issue on computational molecular biology. J. Comput. Syst. Sci. 73(7): 1023 (2007) - [j40]Max A. Alekseyev, Pavel A. Pevzner:
Are There Rearrangement Hotspots in the Human Genome? PLoS Comput. Biol. 3(11) (2007) - [j39]Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner:
Protein identification by spectral networks analysis. Proc. Natl. Acad. Sci. USA 104(15): 6140-6145 (2007) - [j38]Max A. Alekseyev, Pavel A. Pevzner:
Whole Genome Duplications and Contracted Breakpoint Graphs. SIAM J. Comput. 36(6): 1748-1763 (2007) - [j37]Degui Zhi, Uri Keich, Pavel A. Pevzner, Steffen Heber, Haixu Tang:
Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly. IEEE ACM Trans. Comput. Biol. Bioinform. 4(1): 54-64 (2007) - [j36]Max A. Alekseyev, Pavel A. Pevzner:
Colored de Bruijn Graphs and the Genome Halving Problem. IEEE ACM Trans. Comput. Biol. Bioinform. 4(1): 98-107 (2007) - [c48]Pavel A. Pevzner:
Protein Identification via Spectral Networks Analysis. APBC 2007: 5 - [c47]Max A. Alekseyev, Pavel A. Pevzner:
Whole genome duplications, multi-break rearrangements, and genome halving problem. SODA 2007: 665-679 - [c46]Pavel A. Pevzner:
Shotgun Protein Sequencing. WABI 2007: 1 - 2006
- [j35]Degui Zhi, S. Sri Krishna, Haibo Cao, Pavel A. Pevzner, Adam Godzik:
Representing and comparing protein structures as paths in three-dimensional space. BMC Bioinform. 7: 460 (2006) - [j34]Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner:
Modeling and Characterization of Multi-charge Mass Spectra for Peptide Sequencing. J. Bioinform. Comput. Biol. 4(6): 1329-1352 (2006) - [j33]Qian Peng, Pavel A. Pevzner, Glenn Tesler:
The Fragile Breakage versus Random Breakage Models of Chromosome Evolution. PLoS Comput. Biol. 2(2) (2006) - [j32]Mark Chaisson, Benjamin J. Raphael, Pavel A. Pevzner:
Microinversions in mammalian evolution. Proc. Natl. Acad. Sci. USA 103(52): 19824-19829 (2006) - [c45]Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner:
Characterization of Multi-Charge Mass Spectra for Peptide Sequencing. APBC 2006: 109-119 - [c44]Neil Christopher Jones, Pavel A. Pevzner:
Comparative genomics reveals unusually long motifs in mammalian genomes. ISMB (Supplement of Bioinformatics) 2006: 236-242 - [c43]Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner:
A New Approach to Protein Identification. RECOMB 2006: 363-378 - [e7]Alberto Apostolico, Concettina Guerra, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Research in Computational Molecular Biology, 10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006, Proceedings. Lecture Notes in Computer Science 3909, Springer 2006, ISBN 3-540-33295-2 [contents] - 2005
- [j31]Richard M. Karp, Ming Li, Pavel A. Pevzner, Ron Shamir:
Guest Editors' foreword. J. Comput. Syst. Sci. 70(3): 283- (2005) - [c42]Dekel Tsur, Stephen Tanner, Ebrahim Zandi, Vineet Bafna, Pavel A. Pevzner:
Identification of Post-Translational Modifications via Blind Search of Mass-Spectra. CSB 2005: 157-166 - [c41]Alkes L. Price, Neil Christopher Jones, Pavel A. Pevzner:
De novo identification of repeat families in large genomes. ISMB (Supplement of Bioinformatics) 2005: 351-358 - [c40]Ari Frank, Stephen Tanner, Pavel A. Pevzner:
Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry. RECOMB 2005: 326-341 - [e6]Satoru Miyano, Jill P. Mesirov, Simon Kasif, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings. Lecture Notes in Computer Science 3500, Springer 2005, ISBN 3-540-25866-3 [contents] - 2004
- [j30]Mark Chaisson, Pavel A. Pevzner, Haixu Tang:
Fragment assembly with short reads. Bioinform. 20(13): 2067-2074 (2004) - [j29]Pavel A. Pevzner:
Educating biologists in the 21st century: bioinformatics scientists versus bioinformatics technicians. Bioinform. 20(14): 2159-2161 (2004) - [j28]Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky:
Scalable Heuristics for Design of DNA Probe Arrays. J. Comput. Biol. 11(2/3): 429-447 (2004) - [c39]Max A. Alekseyev, Pavel A. Pevzner:
Genome Halving Problem Revisited. FSTTCS 2004: 1-15 - [c38]Benjamin J. Raphael, Pavel A. Pevzner:
Reconstructing tumor amplisomes. ISMB/ECCB (Supplement of Bioinformatics) 2004: 265-273 - [c37]Pavel A. Pevzner, Haixu Tang, Glenn Tesler:
De novo repeat classification and fragment assembly. RECOMB 2004: 213-222 - 2003
- [c36]Alkes L. Price, Sriram Ramabhadran, Pavel A. Pevzner:
Finding subtle motifs by branching from sample strings. ECCB 2003: 149-155 - [c35]Benjamin J. Raphael, Stanislav Volik, Colin C. Collins, Pavel A. Pevzner:
Reconstructing tumor genome architectures. ECCB 2003: 162-171 - [c34]Eleazar Eskin, Uri Keich, Mikhail S. Gelfand, Pavel A. Pevzner:
Genome-Wide Analysis of Bacterial Promoter Regions. Pacific Symposium on Biocomputing 2003: 29-40 - [c33]Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky:
Engineering a scalable placement heuristic for DNA probe arrays. RECOMB 2003: 148-156 - [c32]Pavel A. Pevzner, Glenn Tesler:
Transforming men into mice: the Nadeau-Taylor chromosomal breakage model revisited. RECOMB 2003: 247-256 - [e5]Martin Vingron, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman, Webb Miller:
Proceedings of the Sventh Annual International Conference on Computational Biology, RECOMB 2003, Berlin, Germany, April 10-13, 2003. ACM 2003, ISBN 1-58113-635-8 [contents] - 2002
- [j27]Uri Keich, Pavel A. Pevzner:
Finding motifs in the twilight zone. Bioinform. 18(10): 1374-1381 (2002) - [j26]Uri Keich, Pavel A. Pevzner:
U Subtle motifs: defining the limits of motif finding algorithms. Bioinform. 18(10): 1382-1390 (2002) - [j25]Ming Li, Pavel A. Pevzner, Ron Shamir:
Foreword. J. Comput. Syst. Sci. 65(3): 441 (2002) - [c31]Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner:
Splicing graphs and EST assembly problem. ISMB 2002: 181-188 - [c30]Eleazar Eskin, Pavel A. Pevzner:
Finding composite regulatory patterns in DNA sequences. ISMB 2002: 354-363 - [c29]Zufar Mulyukov, Pavel A. Pevzner:
EULER-PCR: Finishing Experiments for Repeat Resolution. Pacific Symposium on Biocomputing 2002: 199-210 - [c28]Sing-Hoi Sze, Mikhail S. Gelfand, Pavel A. Pevzner:
Finding Weak Motifs in DNA Sequences. Pacific Symposium on Biocomputing 2002: 235-246 - [c27]Uri Keich, Pavel A. Pevzner:
Finding motifs in the twilight zone. RECOMB 2002: 195-204 - [c26]Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky:
Border Length Minimization in DNA Array Design. WABI 2002: 435-448 - [e4]Gene Myers, Sridhar Hannenhalli, David Sankoff, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Proceedings of the Sixth Annual International Conference on Computational Biology, RECOMB 2002, Washington, DC, USA, April 18-21, 2002. ACM 2002, ISBN 1-58113-498-3 [contents] - 2001
- [j24]Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner:
A new approach to sequence comparison: normalized sequence alignment. Bioinform. 17(4): 327-337 (2001) - [j23]Leslie Ann Goldberg, Paul W. Goldberg, Mike Paterson, Pavel A. Pevzner, Süleyman Cenk Sahinalp, Elizabeth Sweedyk:
The Complexity of Gene Placement. J. Algorithms 41(2): 225-243 (2001) - [c25]Pavel A. Pevzner, Haixu Tang:
Fragment assembly with double-barreled data. ISMB (Supplement of Bioinformatics) 2001: 225-233 - [c24]Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner:
A new approach to sequence comparison: normalized sequence alignment. RECOMB 2001: 2-11 - [c23]Pavel A. Pevzner, Haixu Tang, Michael S. Waterman:
A new approach to fragment assembly in DNA sequencing. RECOMB 2001: 256-267 - 2000
- [b1]Pavel A. Pevzner:
Computational molecular biology - an algorithmic approach. MIT Press 2000, ISBN 978-0-262-16197-8, pp. I-XVIII, 1-314 - [j22]Sorin Istrail, Pavel A. Pevzner, Ron Shamir:
Foreword. Discret. Appl. Math. 104(1-3): 1-2 (2000) - [j21]Pavel A. Pevzner, Vlado Dancík, Chris L. Tang:
Mutation-Tolerant Protein Identification by Mass Spectrometry. J. Comput. Biol. 7(6): 777-787 (2000) - [c22]Pavel A. Pevzner, Sing-Hoi Sze:
Combinatorial Approaches to Finding Subtle Signals in DNA Sequences. ISMB 2000: 269-278 - [c21]Pavel A. Pevzner, Vlado Dancík, Chris L. Tang:
Mutation-tolerant protein identification by mass-spectrometry. RECOMB 2000: 231-236 - [e3]Ron Shamir, Satoru Miyano, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, RECOMB 2000, Tokyo, Japan, April 8-11, 2000. ACM 2000, ISBN 1-58113-186-0 [contents]
1990 – 1999
- 1999
- [j20]Sridhar Hannenhalli, Pavel A. Pevzner:
Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals. J. ACM 46(1): 1-27 (1999) - [j19]Vlado Dancík, Theresa A. Addona, Karl R. Clauser, James E. Vath, Pavel A. Pevzner:
De Novo Peptide Sequencing via Tandem Mass Spectrometry. J. Comput. Biol. 6(3/4): 327-342 (1999) - [c20]Earl Hubbell, Pavel A. Pevzner:
Fidelity Probes for DNA Arrays. ISMB 1999: 113-117 - [c19]Leslie Ann Goldberg, Paul W. Goldberg, Mike Paterson, Pavel A. Pevzner, Süleyman Cenk Sahinalp, Elizabeth Sweedyk:
The Complexity of Gene Placement. SODA 1999: 386-395 - [e2]Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, RECOMB 1999, Lyon, France, April 11-14, 1999. ACM 1999, ISBN 1-58113-069-4 [contents] - 1998
- [j18]Sing-Hoi Sze, Mikhail A. Roytberg, Mikhail S. Gelfand, Andrey A. Mironov, Tatiana V. Astakhova, Pavel A. Pevzner:
Algorithms and software for support of gene identification experiments. Bioinform. 14(1): 14-19 (1998) - [j17]Sorin Istrail, Pavel A. Pevzner, Ron Shamir:
Foreword. Discret. Appl. Math. 88(1-3): 3-6 (1998) - [j16]Vineet Bafna, Pavel A. Pevzner:
Sorting by Transpositions. SIAM J. Discret. Math. 11(2): 224-240 (1998) - [c18]Andrey A. Mironov, Pavel A. Pevzner:
SST versus EST in Gene Recognition (Invited Paper). SPIRE 1998: 60-64 - [e1]Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, RECOMB 1998, New York, NY, USA, March 22-25, 1998. ACM 1998, ISBN 0-89791-976-9 [contents] - 1997
- [j15]I. Belyi, Pavel A. Pevzner:
Software for DNA sequencing by hybridization. Comput. Appl. Biosci. 13(2): 205-210 (1997) - [j14]Michael S. Waterman, Sorin Istrail, Pavel A. Pevzner:
Selected Papers from RECOMB'97 - Preface. J. Comput. Biol. 4(3): 215-216 (1997) - [j13]Sing-Hoi Sze, Pavel A. Pevzner:
Las Vegas Algorithms for Gene Recognition: Suboptimal and Error-Tolerant Spliced Alignment. J. Comput. Biol. 4(3): 297-309 (1997) - [j12]Alfred V. Aho, David S. Johnson, Richard M. Karp, S. Rao Kosaraju, Catherine C. McGeoch, Christos H. Papadimitriou, Pavel A. Pevzner:
Emerging opportunities for theoretical computer science. SIGACT News 28(3): 65-74 (1997) - [j11]Vineet Bafna, Eugene L. Lawler, Pavel A. Pevzner:
Approximation Algorithms for Multiple Sequence Alignment. Theor. Comput. Sci. 182(1-2): 233-244 (1997) - [c17]Guorong Xu, Sing-Hoi Sze, Cheng-Pin Liu, Pavel A. Pevzner, Norman Arnheim:
Gene Hunting without Sequencing Genomis Clones: the "Twenty Questions" game with genes. German Conference on Bioinformatics 1997: 17 - [c16]Sing-Hoi Sze, Pavel A. Pevzner:
Las Vegas algorithms for gene recognition: suboptimal and error-tolerant spliced alignment. RECOMB 1997: 300-309 - 1996
- [j10]Sridhar Hannenhalli, William Feldman, Herbert F. Lewis, Steven Skiena, Pavel A. Pevzner:
Positional sequencing by hybridization. Comput. Appl. Biosci. 12(1): 19-24 (1996) - [j9]Vineet Bafna, Pavel A. Pevzner:
Genome Rearrangements and Sorting by Reversals. SIAM J. Comput. 25(2): 272-289 (1996) - [c15]Mikhail S. Gelfand, Andrey A. Mironov, Pavel A. Pevzner:
Spliced Alignment: A New Approach to Gene Recognition. CPM 1996: 141-158 - [c14]Sridhar Hannenhalli, Pavel A. Pevzner:
To Cut... or Not to Cut (Applications of Comparative Physical Maps in Molecular Evolution). SODA 1996: 304-313 - 1995
- [j8]Pavel A. Pevzner:
DNA Physical Mapping and Alternating Eulerian Cycles in Colored Graphs. Algorithmica 13(1/2): 77-105 (1995) - [j7]Pavel A. Pevzner, Michael S. Waterman:
Multiple Filtration and Approximate Pattern Matching. Algorithmica 13(1/2): 135-154 (1995) - [j6]Andrey A. Mironov, N. N. Alexandrov, N. Yu. Bogodarova, A. Grigorjev, V. F. Lebedev, L. V. Lunovskaya, M. E. Truchan, Pavel A. Pevzner:
DNASUN: a package of computer programs for the biotechnology laboratory. Comput. Appl. Biosci. 11(3): 331-335 (1995) - [c13]Sridhar Hannenhalli, Pavel A. Pevzner:
Transforming Men into Mice (Polynomial Algorithm for Genomic Distance Problem). FOCS 1995: 581-592 - [c12]Pavel A. Pevzner, Michael S. Waterman:
Open Combinatorial Problems in Computational Molecular Biology. ISTCS 1995: 158-173 - [c11]Vineet Bafna, Pavel A. Pevzner:
Sorting Permutations by Transpositions. SODA 1995: 614-623 - [c10]Sridhar Hannenhalli, Pavel A. Pevzner:
Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. STOC 1995: 178-189 - [p1]Sridhar Hannenhalli, Pavel A. Pevzner:
Towards a Computational Theory of Genome Rearrangements. Computer Science Today 1995: 184-202 - 1994
- [j5]Pavel A. Pevzner:
Rearrangements of DNA Sequences and SBH. Comput. Chem. 18(3): 221-223 (1994) - [c9]Vineet Bafna, Eugene L. Lawler, Pavel A. Pevzner:
Approximation Algorithms for Multiple Sequence Alignment. CPM 1994: 43-53 - [c8]Xiaoqiu Huang, Pavel A. Pevzner, Webb Miller:
Parametric Recomuting in Alignment Graphs. CPM 1994: 87-101 - [c7]Pavel A. Pevzner, Robert J. Lipshutz:
Towards DNA Sequencing Chips. MFCS 1994: 143-158 - 1993
- [c6]Pavel A. Pevzner, Michael S. Waterman:
A Fast Filtration Algorithm for the Substring Matching Problem. CPM 1993: 197-214 - [c5]Martin Vingron, Pavel A. Pevzner:
Multiple Sequence Comparison and n-Dimensional Image Reconstruction. CPM 1993: 243-253 - [c4]Vineet Bafna, Pavel A. Pevzner:
Genome Rearrangements and Sorting by Reversals. FOCS 1993: 148-157 - 1992
- [j4]Pavel A. Pevzner:
Statistical distance between texts and filtration methods in sequence comparison. Comput. Appl. Biosci. 8(2): 121-127 (1992) - [j3]Mikhail S. Gelfand, C. G. Kozhukhin, Pavel A. Pevzner:
Extendable words in nucleotide sequences. Comput. Appl. Biosci. 8(2): 129-135 (1992) - [j2]Pavel A. Pevzner:
Nucleotide Sequences Versus Markov Models. Comput. Chem. 16(2): 103-106 (1992) - [c3]Pavel A. Pevzner, Michael S. Waterman:
Matrix Longest Common Subsequence Problem, Duality and Hibert Bases. CPM 1992: 79-89 - [c2]Pavel A. Pevzner:
Multiple Alignment with Guaranteed Error Bounds and Communication Cost. CPM 1992: 205-213 - [c1]Pavel A. Pevzner:
DNA Physical Mapping, Flows in Networks and Minimum Cycles Mean in Graphs. Mathematical Methods Of Analysis Of Biopolymer Sequences 1992: 99-112 - 1991
- [j1]C. G. Kozhukhin, Pavel A. Pevzner:
Genome inhomogeneity is determined mainly by WW and SS dinucleotides. Comput. Appl. Biosci. 7(1): 39-49 (1991)
Coauthor Index
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