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ORCIDLang Li 0001
Person information
- affiliation: Ohio State University, College of Medicine, Columbus, OH, USA
- affiliation: Indiana University-Purdue University Indianapolis (IUPUI), IN, USA
Other persons with the same name
- Lang Li — disambiguation page
- Lang Li 0002
![[0000-0002-4832-4499]](https://dblp.org/img/orcid-mark.12x12.png "0000-0002-4832-4499")
— Hengyang Normal University, College of Computer Science and Technology, Hengyang, China (and 1 more)
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2020 – today
- 2024
[j39]Eugene Jeong, Yu Su, Lang Li, You Chen:
Discovering clinical drug-drug interactions with known pharmacokinetics mechanisms using spontaneous reporting systems and electronic health records. J. Biomed. Informatics 153: 104639 (2024)- 2023
- [j38]Weixin Xie, Kunjie Fan, Shijun Zhang, Lang Li:
Multiple sampling schemes and deep learning improve active learning performance in drug-drug interaction information retrieval analysis from the literature. J. Biomed. Semant. 14(1): 5 (2023) - [j37]Weidan Cao, Lang Li, Puneet Mathur, John Thompson, M. Wesley Milks:
A mobile health application for patients eligible for statin therapy: app development and qualitative feedback on design and usability. BMC Medical Informatics Decis. Mak. 23(1): 128 (2023) - 2022
- [j36]Shijun Zhang, Heng-Yi Wu, Lei Wang, Gongbo Zhang, Luis M. Rocha, Hagit Shatkay, Lang Li:
Translational drug-interaction corpus. Database J. Biol. Databases Curation 2022(2022) (2022) - [j35]Yue Zhao, Lianbo Yu, Xue Wu, Haoran Li, Kevin R. Coombes, Kin Fai Au, Lijun Cheng, Lang Li:
CEDA: integrating gene expression data with CRISPR-pooled screen data identifies essential genes with higher expression. Bioinform. 38(23): 5245-5252 (2022) - [j34]Samar Binkheder, Heng-Yi Wu, Sara K. Quinney, Shijun Zhang, Md. Muntasir Zitu, Chienwei Chiang, Lei Wang, Josette Jones, Lang Li:
PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature. J. Biomed. Semant. 13(1): 17 (2022) - [j33]Samar Binkheder, Heng-Yi Wu, Sara K. Quinney, Shijun Zhang, Md. Muntasir Zitu, Chienwei Chiang, Lei Wang, Josette Jones, Lang Li:
Correction: PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature. J. Biomed. Semant. 13(1): 20 (2022) - [j32]Lijun Cheng, Pratik Karkhanis, Birkan Gokbag, Yueze Liu, Lang Li:
DGCyTOF: Deep learning with graphic cluster visualization to predict cell types of single cell mass cytometry data. PLoS Comput. Biol. 18(4) (2022) - [j31]Enze Liu, Xue Wu, Lei Wang, Yang Huo, Huanmei Wu, Lang Li, Lijun Cheng:
DSCN: Double-target selection guided by CRISPR screening and network. PLoS Comput. Biol. 18(8) (2022) - [c18]Bernal Jimenez Gutierrez, Nikolas McNeal, Clayton Washington, You Chen, Lang Li, Huan Sun, Yu Su:
Thinking about GPT-3 In-Context Learning for Biomedical IE? Think Again. EMNLP (Findings) 2022: 4497-4512 - [i6]Bernal Jiménez Gutiérrez, Nikolas McNeal, Clay Washington, You Chen, Lang Li, Huan Sun, Yu Su:
Thinking about GPT-3 In-Context Learning for Biomedical IE? Think Again. CoRR abs/2203.08410 (2022) - 2021
- [j30]Kunjie Fan, Lijun Cheng, Lang Li:
Artificial intelligence and machine learning methods in predicting anti-cancer drug combination effects. Briefings Bioinform. 22(6) (2021) - [j29]Xiangmin Ji, Lei Wang, Liyan Hua, Xueying Wang, Pengyue Zhang, Aditi Shendre, Weixing Feng, Jin Li, Lang Li:
Improved Adverse Drug Event Prediction Through Information Component Guided Pharmacological Network Model (IC-PNM). IEEE ACM Trans. Comput. Biol. Bioinform. 18(3): 1113-1121 (2021) - [j28]Enze Liu, Jin Li, Garrett Kinnebrew, Pengyue Zhang, Yan Zhang, Lijun Cheng, Lang Li:
A Fast and Furious Bayesian Network and Its Application of Identifying Colon Cancer to Liver Metastasis Gene Regulatory Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 18(4): 1325-1335 (2021) - [c17]Eugene Jeong, Anna K. Person, Joanna L. Stollings, Yu Su, Lang Li, You Chen:
Detecting Drug-Drug Interactions in COVID-19 Patients. MedInfo 2021: 330-334 - 2020
- [j27]Xiangxiang Zeng, Siyi Zhu, Yuan Hou, Pengyue Zhang, Lang Li, Jing Li, L. Frank Huang, Stephen J. Lewis, Ruth Nussinov, Feixiong Cheng:
Network-based prediction of drug-target interactions using an arbitrary-order proximity embedded deep forest. Bioinform. 36(9): 2805-2812 (2020) - [j26]Wen-Hao Chiang, Li Shen, Lang Li, Xia Ning:
Drug-drug interaction prediction based on co-medication patterns and graph matching. Int. J. Comput. Biol. Drug Des. 13(1): 36-57 (2020) - [j25]Xiaohui Yao, Tiffany Tsang, Qing Sun, Sara K. Quinney, Pengyue Zhang, Xia Ning, Lang Li, Li Shen:
Mining and visualizing high-order directional drug interaction effects using the FAERS database. BMC Medical Informatics Decis. Mak. 20-S(2): 50 (2020)
2010 – 2019
- 2019
- [j24]Danai Chasioti, Xiaohui Yao, Pengyue Zhang, Samuel Lerner, Sara K. Quinney, Xia Ning, Lang Li, Li Shen:
Mining Directional Drug Interaction Effects on Myopathy Using the FAERS Database. IEEE J. Biomed. Health Informatics 23(5): 2156-2163 (2019) - [r1]Enze Liu, Lang Li, Lijun Cheng:
Gene Regulatory Network Review. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 155-164 - [i5]Wen-Hao Chiang, Li Shen, Lang Li, Xia Ning:
Drug-drug interaction prediction based on co-medication patterns and graph matching. CoRR abs/1902.08675 (2019) - 2018
- [j23]Aida Yazdanparast, Lang Li, Milan Radovich, Lijun Cheng:
Signal translational efficiency between mRNA expression and antibody-based protein expression for breast cancer and its subtypes from cell lines to tissue. Int. J. Comput. Biol. Drug Des. 11(1/2): 67-89 (2018) - [j22]Wen-Hao Chiang, Titus Schleyer, Li Shen, Lang Li, Xia Ning:
Pattern Discovery from High-Order Drug-Drug Interaction Relations. J. Heal. Informatics Res. 2(3): 272-304 (2018) - [c16]Gongbo Zhang, Debarati Roychowdhury, Pengyuan Li, Heng-Yi Wu, Shijun Zhang, Lang Li, Hagit Shatkay:
Identifying Experimental Evidence in Biomedical Abstracts Relevant to Drug-Drug Interactions. BCB 2018: 414-418 - [c15]Samar Binkheder, Heng-Yi Wu, Sara K. Quinney, Lang Li:
Analyzing Patterns of Literature-Based Phenotyping Definitions for Text Mining Applications. ICHI 2018: 374-376 - [i4]Wen-Hao Chiang, Li Shen, Lang Li, Xia Ning:
Drug Recommendation toward Safe Polypharmacy. CoRR abs/1803.03185 (2018) - 2017
- [j21]Santosh Philips, Heng-Yi Wu, Lang Li:
Using machine learning algorithms to identify genes essential for cell survival. BMC Bioinform. 18(S-11): 19-29 (2017) - [j20]Guanglong Jiang, Yingqiang Fu, Pengyue Zhang, Shirin Ardeshir-Rouhani-Fard, Lijun Cheng, Lang Li, Zhigao Li:
Expression quantitative locus mapping for identification of hotspots using an empirical Bayes mixture model. Int. J. Comput. Biol. Drug Des. 10(2): 108-122 (2017) - [j19]Yangyang Hao, Xiaoling Xuei, Lang Li, Harikrishna Nakshatri, Howard J. Edenberg, Yunlong Liu:
RareVar: A Framework for Detecting Low-Frequency Single-Nucleotide Variants. J. Comput. Biol. 24(7): 637-646 (2017) - [j18]Raphaël Mourad, Lang Li, Olivier Cuvier:
Uncovering direct and indirect molecular determinants of chromatin loops using a computational integrative approach. PLoS Comput. Biol. 13(5) (2017) - [j17]Varshini Vasudevaraja, Jamie Renbarger, Ridhhi Girish Shah, Garrett Kinnebrew, Murray Korc, Limei Wang, Yang Huo, Enze Liu, Lang Li, Lijun Cheng:
PMTDS: a computational method based on genetic interaction networks for Precision Medicine Target-Drug Selection in cancer. Quant. Biol. 5(4): 380-394 (2017) - [c14]Gongbo Zhang, Moumita Bhattacharya, Heng-Yi Wu, Pengyuan Li, Lang Li, Hagit Shatkay:
Identifying articles relevant to drug-drug interaction: Addressing class imbalance. BIBM 2017: 1141-1147 - [c13]Xia Ning, Titus Schleyer, Li Shen, Lang Li:
Pattern Discovery from Directional High-Order Drug-Drug Interaction Relations. ICHI 2017: 154-162 - [c12]Xia Ning, Li Shen, Lang Li:
Predicting High-Order Directional Drug-Drug Interaction Relations. ICHI 2017: 556-561 - 2016
- [j16]Yaoyun Zhang, Heng-Yi Wu, Jingcheng Du, Jun Xu, Jingqi Wang, Cui Tao, Lang Li, Hua Xu:
Extracting drug-enzyme relation from literature as evidence for drug drug interaction. J. Biomed. Semant. 7: 11 (2016) - [j15]Yaoyun Zhang, Heng-Yi Wu, Jingcheng Du, Jun Xu, Jingqi Wang, Cui Tao, Lang Li, Hua Xu:
Erratum to: Extracting drug-enzyme relation from literature as evidence for drug drug interaction. J. Biomed. Semant. 7: 21 (2016) - [j14]Yaoyun Zhang, Heng-Yi Wu, Jun Xu, Jingqi Wang, Ergin Soysal, Lang Li, Hua Xu:
Leveraging syntactic and semantic graph kernels to extract pharmacokinetic drug drug interactions from biomedical literature. BMC Syst. Biol. 10(S-3): 67 (2016) - [j13]Lijun Cheng, Bryan P. Schneider, Lang Li:
A bioinformatics approach for precision medicine off-label drug drug selection among triple negative breast cancer patients. J. Am. Medical Informatics Assoc. 23(4): 741-749 (2016) - [c11]Rion Brattig Correia, Lang Li, Luis M. Rocha:
Monitoring Potential Drug Interactions and Reactions via Network Analysis of Instagram User Timelines. PSB 2016: 492-503 - 2015
- [i3]Rion Brattig Correia, Lang Li, Luis M. Rocha:
Monitoring Potential Drug Interactions and Reactions via Network Analysis of Instagram User Timelines. CoRR abs/1510.01006 (2015) - 2014
- [j12]Seongho Kim, Lang Li:
Statistical identifiability and convergence evaluation for nonlinear pharmacokinetic models with particle swarm optimization. Comput. Methods Programs Biomed. 113(2): 413-432 (2014) - [c10]Amy Webb, Aaron Albin, Zhan Ye, Majid Rastegar-Mojarad, Kun Huang, Jeffrey D. Parvin, Wolfgang Sadee, Lang Li, Simon M. Lin, Yang Xiang:
Mining massive SNP data for identifying associated SNPs and uncovering gene relationships. BCB 2014: 304-313 - [i2]Artemy Kolchinsky, Anália Lourenço, Heng-Yi Wu, Lang Li, Luis M. Rocha:
Extraction of Pharmacokinetic Evidence of Drug-drug Interactions from the Literature. CoRR abs/1412.0744 (2014) - 2013
- [j11]Heng-Yi Wu, Shreyas D. Karnik, Abhinita Subhadarshini, Zhiping Wang, Santosh Philips, Xu Han, Chienwei Chiang, Lei Liu, Malaz Boustani, Luis M. Rocha, Sara K. Quinney, David A. Flockhart, Lang Li:
An integrated pharmacokinetics ontology and corpus for text mining. BMC Bioinform. 14: 35 (2013) - [c9]Artemy Kolchinsky, Anália Lourenço, Lang Li, Luis M. Rocha:
Evaluation of Linear Classifiers on Articles Containing Pharmacokinetic Evidence of Drug-Drug Interactions. Pacific Symposium on Biocomputing 2013: 409-420 - 2012
- [j10]Pengyue Zhang, Raphaël Mourad, Yang Xiang, Kun Huang, Tim Hui-Ming Huang, Kenneth P. Nephew, Yunlong Liu, Lang Li:
A dynamic time order network for time-series gene expression data analysis. BMC Syst. Biol. 6(S-3): S9 (2012) - [j9]Jon D. Duke, Xu Han, Zhiping Wang, Abhinita Subhadarshini, Shreyas D. Karnik, Xiaochun Li, Stephen D. Hall, Yan Jin, J. Thomas Callaghan, J. Marc Overhage, David A. Flockhart, R. Matthew Strother, Sara K. Quinney, Lang Li:
Literature Based Drug Interaction Prediction with Clinical Assessment Using Electronic Medical Records: Novel Myopathy Associated Drug Interactions. PLoS Comput. Biol. 8(8) (2012) - [i1]Artemy Kolchinsky, Anália Lourenço, Lang Li, Luis M. Rocha:
Evaluation of linear classifiers on articles containing pharmacokinetic evidence of drug-drug interactions. CoRR abs/1210.0734 (2012) - 2011
- [j8]Changyu Shen, Yi-Wen Huang, Yunlong Liu, Guohua Wang, Yuming Zhao, Zhiping Wang, Mingxiang Teng, Yadong Wang, David A. Flockhart, Todd C. Skaar, Pearlly Yan, Kenneth P. Nephew, Tim Hui-Ming Huang, Lang Li:
A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer. BMC Syst. Biol. 5: 67 (2011) - [c8]Heng-Yi Wu, Yu Wang, Pengyue Zheng, Guanglong Jiang, Yunlong Liu, Tim Hui-Ming Huang, Kenneth P. Nephew, Lang Li:
An ERα/modulator regulatory network in the breast cancer cells. GENSiPS 2011: 5-8 - [c7]Mingxiang Teng, Yadong Wang, Yunlong Liu, Seongho Kim, Curtis Balch, Kenneth P. Nephew, Lang Li:
Empirical bayes model comparisons for differential methylation analysis. GENSiPS 2011: 9-12 - [c6]Peng Liu, Lang Li:
The Application and Research of a Simulation-Based Line Balancing Method. ICDMA 2011: 1195-1198 - 2010
- [j7]Zhiping Wang, Seongho Kim, Sara K. Quinney, Jihao Zhou, Lang Li:
Non-compartment model to compartment model pharmacokinetics transformation meta-analysis - a multivariate nonlinear mixed model. BMC Syst. Biol. 4(S-1): S8 (2010)
2000 – 2009
- 2009
- [j6]Zhiping Wang, Seongho Kim, Sara K. Quinney, Yingying Guo, Stephen D. Hall, Luis M. Rocha, Lang Li:
Literature mining on pharmacokinetics numerical data: A feasibility study. J. Biomed. Informatics 42(4): 726-735 (2009) - [c5]Terry Camerlengo, Hatice Gulcin Ozer, Pearlly Yan, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang, Mingxiang Teng, Lang Li, Yunlong Liu, Francisco Perez, Tahsin M. Kurç:
Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research. BIBM 2009: 392-395 - 2008
- [j5]Changyu Shen, Zhiping Wang, Ganesh Shankar, Xiang Zhang, Lang Li:
A hierarchical statistical model to assess the confidence of peptides and proteins inferred from tandem mass spectrometry. Bioinform. 24(2): 202-208 (2008) - [j4]Meng Li, Hyun-il Henry Paik, Curtis Balch, Yoosung Kim, Lang Li, Tim Hui-Ming Huang, Kenneth P. Nephew, Sun Kim:
Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells. Bioinform. 24(16): 1745-1748 (2008) - 2007
- [j3]Lang Li, Siu Hui:
Positive False Discovery Rate Estimate in Step-Wise Variable Selection. Commun. Stat. Simul. Comput. 36(6): 1217-1231 (2007) - [c4]Guohua Wang, Xin Wang, Lang Li, Kenneth P. Nephew, Howard J. Edenberg, Feng Zhou, Yunlong Liu:
Identification of Transcription Factor and microRNA Binding Sites from Array-derived Gene Expression Data. BIOCOMP 2007: 657-663 - [c3]Xin Wang, Guohua Wang, Changyu Shen, Lang Li, Xinguo Wang, Sean D. Mooney, Howard J. Edenberg, Jeremy Sanford, Yunlong Liu:
Refining Detection of RNA-Protein Binding Regions by Pyrosequencing of RNA Fragments. BIOCOMP 2007: 664-672 - 2006
- [j2]Lang Li, Alfred S. L. Cheng, Victor X. Jin, Henry H. Paik, Meiyun Fan, Xiaoman Li, Wei Zhang, Jason Robarge, Curtis Balch, Ramana V. Davuluri, Sun Kim, Tim Hui-Ming Huang, Kenneth P. Nephew:
A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha. Bioinform. 22(18): 2210-2216 (2006) - 2005
- [j1]Lang Li, Huidong Shi, Constantin T. Yiannoutsos, Tim Hui-Ming Huang, Kenneth P. Nephew:
Epigenetic Hypothesis Tests for Methylation and Acetylation in a Triple Microarray System. J. Comput. Biol. 12(3): 370-390 (2005) - [c2]Changyu Shen, Lang Li, Jake Yue Chen:
Discover True Association Rates in Multi-protein Complex Proteomics Data Sets. CSB 2005: 167-174 - 2004
- [c1]Jake Yue Chen, Andrey Y. Sivachenko, Lang Li:
High-throughput Protein Interactome Data: Minable or Not? BIOKDD 2004: 18-23
Coauthor Index
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