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ORCIDComputer Applications in the Biosciences, Volume 7
Volume 7, Number 1, January 1991
- John L. Spouge:
Fast optimal alignment. 1-7 - Douglas L. Brutlag, A. R. Galper, D. H. Millis:
Knowledge-based simulation of DNA metabolism: prediction of enzyme action. 9-19 - S. Morante
, Valerio Parisi:
Building structural models of peptides: a semi-automatic software. 21-26 - Federico M. Stefanini, A. Camussi:
An APL procedure to estimate genotype by environment interaction when two environments are considered. 27-29 - E. Ollivier, Henry Soldano, Alain Viari:
'Multifrequency' location and clustering of sequence patterns from proteins. 31-38 - C. G. Kozhukhin, Pavel A. Pevzner:
Genome inhomogeneity is determined mainly by WW and SS dinucleotides. 39-49 - Shu-Yun Le, Jih-Hsiang Chen, Jacob V. Maizel:
Detection of unusual RNA folding regions in HIV and SIV sequences. 51-55 - Arieh Zaritsky, E. Forester:
A simulation program to display specific digestion products of predicted RNA foldings. 57-60 - M. Hauer-Jensen:
Statistical analysis in dBASE-compatible databases. 61-62 - A. Colosimo, E. Rota, P. Omodeo:
A Hypercard program for the identification of biological specimens [published erratum appears in Comput Appl Biosci 1991 Apr;7(2): 285]. 63-69 - Perry L. Miller, Prakash M. Nadkarni, N. M. Carriero:
Parallel computation and FASTA: confronting the problem of parallel database search for a fast sequence comparison algorithm. 71-78 - J. A. Bradshaw, K. J. Carden, D. Riordan:
Ecological applications using a novel expert system shell. 79-83 - Geoffrey J. Barton:
Scanning protein sequence databanks using a distributed processing workstation network. 85-88 - Athel Cornish-Bowden, Jan-Hendrik S. Hofmeyr:
MetaModel: a program for modelling and control analysis of metabolic pathways on the IBM PC and compatibles. 89-93 - C. G. Moore:
A didactic computer simulation of the environmental impact of a pollution discharge. 95-98 - Michel Cheminant, Roger Labia:
The Michaelis-Menten equation: computing substrate concentration as a function of time without restrictions on the initial conditions. 99-101 - K. P. Fung, James Lee:
BASIC program for polynomial regression and smoothing. 103-104 - Rainer Fuchs:
MacPattern: protein pattern searching on the Apple Macintosh. 105-106 - D. Shalloway, C. Royer:
SMGWS 2: improved microcomputer-based three-dimensional stereoscopic macromolecular graphics display. 107-108 - N. R. Deering, D. Shalloway:
GelMetric: semi-automated electrophoretic mobility analysis. 109-110 - Roy H. Smith, Suzy Gottesman, Brent Hobbs, Eliot Lear, David Kristofferson, David Benton, P. R. Smith:
A mechanism for maintaining an up-to-date GenBank database via Usenet. 111-112 - Jean-Michel Claverie, C. Daulmerie:
Smoothing profiles with sliding windows: better to wear a hat!. 113-115
Volume 7, Number 2, April 1991
- Jean Garnier, J. M. Levin:
The protein structure code: what is its present status?. 133-142 - E. A. Cheever, G. Christian Overton, David B. Searls:
Fast Fourier transform-based correlation of DNA sequences using complex plane encoding. 143-154 - Philippe Blaise, Cesare Gessler:
Geobase: a simple geographical information system on a personal computer. 155-160 - H. E. Dayringer, S. A. Sammons:
POLLUX: a program for simulated cloning, mutagenesis and database searching of DNA constructs. 161-167 - Rafael Hernández, José A. Esteban, Margarita García, Federico Morán:
PASHEMOS: a versatile program written in Pascal to simulate patterns on the shells of molluscs, according to the Meinhardt model. 169-174 - Sheldon S. Ball, Vei H. Mah, Perry L. Miller:
SENEX: a computer-based representation of cellular signal transduction processes in the central nervous system. 175-187 - T. N. Bryant:
Software for the development and evaluation of probabilistic identification matrices. 189-193 - Colombe Chappey, A. Danckaert, Philippe Dessen, Serge A. Hazout:
MASH: an interactive program for multiple alignment and consensus sequence construction for biological sequences. 195-202 - Dan S. Prestridge:
SIGNAL SCAN: a computer program that scans DNA sequences for eukaryotic transcriptional elements. 203-206 - D. H. Fitch, M. Goodman:
Phylogenetic scanning: a computer-assisted algorithm for mapping gene conversions and other recombinational events. 207-215 - G. M. Studnicka:
ELISA assay optimization using hyperbolic regression. 217-224 - Alain Jacot-Descombes, Krassimir Todorov, Denis F. Hochstrasser, Christian Pellegrini, Thierry Pun:
LaboImage: a workstation environment for research in image processing and analysis. 225-232 - David J. Parry-Smith, Terri K. Attwood:
SOMAP: a novel interactive approach to multiple protein sequences alignment. 233-235 - A. S. Deshpande, Dana S. Richards, William R. Pearson:
A platform for biological sequence comparison on parallel computers. 237-247 - K. Y. Jiang, J. Zheng, S. B. Higgins:
A generic algorithm for finding restriction sites within DNA sequences. 249-256 - Michael J. E. Sternberg:
PROMOT: a FORTRAN program to scan protein sequences against a library of known motifs. 257-260 - G. H. Dibdin:
Precise charge-coupling calculations for finite difference diffusion problems using a modification of the add-on algorithm Q-COUPLE. 261-263 - P. J. Russell, J. M. Doenias, S. J. Russell:
GELYMAC: a Macintosh application for calculating DNA fragment size from gel electrophoresis migration data. 265-266 - J. G. de Boer:
MARS: a program to find potential restriction sites [published erratum appears in Comput Appl Biosci 1991 Jul;7(3): 415]. 267 - Amos Bairoch:
SEQANALREF: a sequence analysis bibliographic reference databank. 268 - Sarah Barron, Matthew Witten, R. Harkness, J. Driver:
A bibliography on computational algorithms in molecular biology and genetics. 269
Volume 7, Number 3, July 1991
- Ruth Nussinov:
Compositional variations in DNA sequences. 287-293 - Ruth Nussinov:
Signals in DNA sequences and their potential properties. 295-299 - Peter D. Karp:
Artificial intelligence methods for theory representation and hypothesis formation. 301-308 - Roderic Guigó, A. Johansson, Temple F. Smith:
Automatic evaluation of protein sequence functional patterns. 309-315 - M. Grabner, R. Hofbauer:
A computer program for molecular weight determination of DNA fragments (HOWBIG). 317-319 - Julio Collado-Vides:
The search for a grammatical theory of gene regulation is formally justified by showing the inadequacy of context-free grammars. 321-326 - Mondher Farza, Arlette Chéruy:
CAMBIO: software for modelling and simulation of bioprocesses. 327-336 - P. Reiner, M. Brenowitz:
Quantitative densitometry of autoradiograms: digital images representative of optical density. 337-340 - R. Schnobel:
Integrated displays of aligned amino acid sequences and protein structures. 341-346 - David K. Y. Chiu, T. Kolodziejczak:
Inferring consensus structure from nucleic acid sequences. 347-352 - Patrizio Arrigo, F. Giuliano, F. Scalia, A. Rapallo, G. Damiani:
Identification of a new motif on nucleic acid sequence data using Kohonen's self-organizing map. 353-357 - M. P. Mujumdar:
Monte Carlo simulations of ionic channel selectivity. 359-364 - Giorgio Mancini, Alessandro Valbonesi:
MCS/SEL/BAS program - an overlapping clustering method with examples from mating type interactions of ciliated protozoa. 365-371 - R. S. Carmenes:
LSTSQ: a module for reliable constrained and unconstrained nonlinear regression. 373-378 - Ulrich Grob, Christoph J. Gartmann:
COOL - a VAX program for finding COmmon OLigomers in nucleic acid sequences. Thyroid hormone receptor sequences used as an example. 379-381 - T. Letellier, C. Reder, J. P. Mazat:
CONTROL: software for the analysis of the control of metabolic networks. 383-390 - J. W. Brown:
Phylogenetic comparative analysis of RNA structure on Macintosh computers. 391-393 - Antonio Facchiano, Francesco Facchiano, R. Ragone, Giovanni Colonna:
Converter: a program to convert crystallographic coordinates among different molecular graphics standards on PC-IBM platforms. 395-396 - J. W. Brown:
Materials methods: a Macintosh hypercard stack for laboratory protocols. 397 - T. J. Gleeson, Rodger Staden:
An X windows and UNIX implementation of our sequence analysis package. 398 - József Baranyi, Tibor Illeni:
A back-step algorithm for simulation of Monod-type models. 399-401
Volume 7, Number 4, October 1991
- T. B. Schillen:
Designing a neural network simulator - the MENS modelling environment for network systems: I. 417-430 - T. B. Schillen:
Designing a neural network simulator - the MENS modelling environment for network systems: II. 431-446 - Webb Miller, John Barr, Kenneth E. Rudd:
Improved algorithms for searching restriction maps. 447-456 - Christoph J. Gartmann, Ulrich Grob:
A menu-shell for the GCG programs. 457-460 - R. J. Brammer, T. N. Bryant, J. H. May:
Investigation of an expert systems approach to bacterial identification. 461-469 - Seán I. O'Donoghue:
Structural interpretation of fluorescence resonance-energy transfer measurements. 471-477 - M. P. Berger, Peter J. Munson:
A novel randomized iterative strategy for aligning multiple protein sequences. 479-484 - Istvan Ladunga, Ferenc Czako, István Csabai, Tamás Geszti:
Improving signal peptide prediction accuracy by simulated neural network. 485-487 - P. H. Abbrecht, I. M. Thio, R. R. Kyle:
A simple algorithm for averaging multiple cycles of waveforms having varying cycle periods. 489-493 - Philip Taylor, Paul Rosenberg, Maria Samsonova:
A new method for finding long consensus patterns in nucleic acid sequences. 495-500 - P. R. Smith, Alexander Ropelewski, Douglas A. Balog, S. Gottesman, David W. Deerfield II:
A simple approach for the distribution of computationally intense tasks in an heterogeneous environment: distribution of the MDPP image-processing package. 501-507 - A. Danckaert, Colombe Chappey, Serge A. Hazout:
'Size leap' algorithm: an efficient extraction of the longest common motifs from a molecular sequence set. Application to the DNA sequence reconstruction. 509-513 - José Saldanha, Jonathan Eccles:
The application of SSADM to modelling the logical structure of proteins. 515-524 - K. Lucas, M. Busch, S. Mossinger, J. A. Thompson:
An improved microcomputer program for finding gene- or gene family-specific oligonucleotides suitable as primers for polymerase chain reactions or as probes. 525-529 - Alex Bekker, Stanley Von Hagen, Joel Yarmush:
A Macintosh Hypercard stack to simulate the pharmacokinetics of infusion of intravenous anesthetic drugs (NarSim). 531-532 - P. J. O'Hara, D. Venezia:
PRIMEGEN, a tool for designing primers from multiple alignments. 533-534 - Peter R. Sibbald, Hubert Sommerfeldt, P. Argos:
Automated protein sequence pattern handling and PROSITE searching. 535-536
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