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ORCIDDavid J. States
Person information
- affiliation: University of Michigan, Ann Arbor, USA
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2010 – 2019
- 2014
[j25]Sirarat Sarntivijai
, Yu Lin, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma D. Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Yue Liu, Terue Takatsuki, Kaoru Saijo, Hiroshi Masuya, Yukio Nakamura, Matthew H. Brush, Melissa A. Haendel, Jie Zheng, Christian J. Stoeckert Jr., Bjoern Peters, Christopher J. Mungall, Thomas E. Carey, David J. States, Brian D. Athey, Yongqun He:
CLO: The cell line ontology. J. Biomed. Semant. 5: 37 (2014)- 2012
- [j24]Maureen A. Sartor, Alexander S. Ade, Zach Wright, David J. States, Gilbert S. Omenn, Brian D. Athey, Alla Karnovsky:
Metab2MeSH: annotating compounds with medical subject headings. Bioinform. 28(10): 1408-1410 (2012) - 2010
- [j23]Gang Su, Allan Kuchinsky, John H. Morris, David J. States, Fan Meng:
GLay: community structure analysis of biological networks. Bioinform. 26(24): 3135-3137 (2010) - [j22]Arvind Rao, David J. States, Alfred O. Hero III, James Douglas Engel:
Understanding Distal transcriptional Regulation from Sequence, Expression and interactome Perspectives. J. Bioinform. Comput. Biol. 8(2): 219-246 (2010)
2000 – 2009
- 2009
- [j21]Jing Gao, Alexander S. Ade, V. Glenn Tarcea, Terry E. Weymouth, Barbara R. Mirel, H. V. Jagadish, David J. States:
Integrating and annotating the interactome using the MiMI plugin for cytoscape. Bioinform. 25(1): 137-138 (2009) - [j20]Junguk Hur, Adam D. Schuyler, David J. States, Eva L. Feldman:
SciMiner: web-based literature mining tool for target identification and functional enrichment analysis. Bioinform. 25(6): 838-840 (2009) - [j19]David J. States, Alexander S. Ade, Zachary C. Wright, Aaron V. Bookvich, Brian D. Athey:
MiSearch adaptive pubMed search tool. Bioinform. 25(7): 974-976 (2009) - [j18]V. Glenn Tarcea, Terry E. Weymouth, Alexander S. Ade, Aaron V. Bookvich, Jing Gao, Vasudeva Mahavisno, Zach Wright, Adriane Chapman, Magesh Jayapandian, Arzucan Özgür, Yuanyuan Tian, James D. Cavalcoli, Barbara Mirel, Jignesh M. Patel, Dragomir R. Radev, Brian D. Athey, David J. States, H. V. Jagadish:
Michigan molecular interactions r2: from interacting proteins to pathways. Nucleic Acids Res. 37(Database-Issue): 642-646 (2009) - 2008
- [j17]Maital Ashkenazi, Gary D. Bader, Allan Kuchinsky, Menachem Moshelion, David J. States:
Cytoscape ESP: simple search of complex biological networks. Bioinform. 24(12): 1465-1466 (2008) - [j16]Sirarat Sarntivijai, Alexander S. Ade, Brian D. Athey, David J. States:
A bioinformatics analysis of the cell line nomenclature. Bioinform. 24(23): 2760-2766 (2008) - [j15]Aaron Elkiss, Siwei Shen, Anthony Fader, Günes Erkan, David J. States, Dragomir R. Radev:
Blind men and elephants: What do citation summaries tell us about a research article? J. Assoc. Inf. Sci. Technol. 59(1): 51-62 (2008) - [j14]Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel:
Using Directed Information to Build Biologically Relevant Influence Networks. J. Bioinform. Comput. Biol. 6(3): 493-519 (2008) - 2007
- [j13]Yuanyuan Tian, Richard C. McEachin, Carlos Santos, David J. States, Jignesh M. Patel:
SAGA: a subgraph matching tool for biological graphs. Bioinform. 23(2): 232-239 (2007) - [j12]Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel:
Inferring Time-Varying Network Topologies from Gene Expression Data. EURASIP J. Bioinform. Syst. Biol. 2007 (2007) - [j11]Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel:
Motif Discovery in Tissue-Specific Regulatory Sequences Using Directed Information. EURASIP J. Bioinform. Syst. Biol. 2007 (2007) - [j10]Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, Bin Liu, Arnab Nandi, Carlos Santos, Philip C. Andrews, Brian D. Athey, David J. States, H. V. Jagadish:
Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together. Nucleic Acids Res. 35(Database-Issue): 566-571 (2007) - [j9]Yili Chen, Thomas W. Blackwell, Ji Chen, Jing Gao, Angel W. Lee, David J. States:
Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-MYC Recognition Site Binding and Function. PLoS Comput. Biol. 3(4) (2007) - 2006
- [c16]Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel:
Probabilistic data integration and visualization for understanding transcriptional regulation. EUSIPCO 2006: 1-5 - [c15]Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel:
Inference of Biologically Relevant Gene Influence Networks Using the Directed Information Criterion. ICASSP (2) 2006: 1028-1031 - 2005
- [j8]Carlos Santos, Daniela Eggle, David J. States:
Wnt pathway curation using automated natural language processing: combining statistical methods with partial and full parse for knowledge extraction. Bioinform. 21(8): 1653-1658 (2005) - [c14]H. V. Jagadish, David J. States, Burkhard Rost:
ISMB 2005. ISMB (Supplement of Bioinformatics) 2005: 1-2 - [c13]H. V. Jagadish, David J. States, Burkhard Rost:
ISMB 2005 Organization. ISMB (Supplement of Bioinformatics) 2005: 3-6 - 2001
- [j7]David J. States:
Time to defend what we have won. Bioinform. 17(4): 299 (2001) - [j6]Rongxiang Liu, Thomas W. Blackwell, David J. States:
Conformational model for binding site recognition by the E.coli MetJ transcription factor. Bioinform. 17(7): 622-633 (2001) - [c12]David J. States, Volker Nowotny, Thomas W. Blackwell:
Probabilistic approaches to the use of higher order clone relationships in physical map assembly. ISMB (Supplement of Bioinformatics) 2001: 262-269 - 2000
- [c11]Zhengyan Kan, Warren Gish, Eric C. Rouchka, Jarret Glasscock, David J. States:
UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences. ISMB 2000: 218-227
1990 – 1999
- 1999
- [c10]Thomas W. Blackwell, Eric C. Rouchka, David J. States:
Identity by Descent Genome Segmentation Based on Single Nucleotide Polymorphism Distributions. ISMB 1999: 54-59 - 1998
- [j5]Pankaj Agarwal, David J. States:
Comparative accuracy of methods for protein sequence similarity search. Bioinform. 14(1): 40-47 (1998) - [c9]Eric C. Rouchka, David J. States:
Sequence Assembly Validation by Multiple Restriction Digest Fragment Coverage Analysis. ISMB 1998: 140-147 - [c8]Rongxiang Liu, Thomas W. Blackwell, David J. States:
A structure based similarity measure for nucleic acid sequence comparison. RECOMB 1998: 173-181 - [c7]David G. Politte, David R. Maffitt, David J. States:
Estimation of allele frequencies from color-multiplexed electropherograms. RECOMB 1998: 202-206 - 1996
- [j4]Pankaj Agarwal, David J. States:
A Bayesian Evolutionary Distance for Parametrically Aligned Sequences. J. Comput. Biol. 3(1): 1-17 (1996) - [c6]David J. States, Pankaj Agarwal:
Compact Encoding Strategies for DNA Sequence Similarity Search. ISMB 1996: 211-217 - [e1]David J. States, Pankaj Agarwal, Terry Gaasterland, Lawrence Hunter, Randall Smith:
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, St. Louis, MO, USA, June 12-15 1996. AAAI 1996, ISBN 1-57735-002-2 [contents] - 1994
- [j3]David J. States, Warren Gish:
QGB: Combined Use of Sequence Similarity and Codon Bias for Coding Region Identification. J. Comput. Biol. 1(1): 39-50 (1994) - [c5]Toni Kazic, David J. States, Lloyd Allison:
Motifs in Biology: Analysis of Ambiguous Data: Introduction. HICSS (5) 1994: 224 - [c4]Pankaj Agarwal, David J. States:
The Repeat Pattern Toolkit (RPT): Analyzing the Structure and Evolution of the C. elegans Genome. ISMB 1994: 1-9 - 1993
- [j2]Jean-Michel Claverie, David J. States:
Information Enhancement Methods for Large Scale Sequence Analysis. Comput. Chem. 17(2): 191-201 (1993) - [c3]David J. States, Nomi L. Harris, Lawrence Hunter:
Computationally Efficient Cluster Representation in Molecular Sequence Megaclassification. ISMB 1993: 387-394 - 1992
- [j1]Lawrence Hunter, David J. States:
Bayesian Classification of Protein Structure. IEEE Expert 7(4): 67-75 (1992) - [c2]Nomi L. Harris, Lawrence Hunter, David J. States:
Mega-Classification: Discovering Motifs in Massive Datastreams. AAAI 1992: 837-842 - [c1]Lawrence Hunter, Nomi L. Harris, David J. States:
Efficient Classification of Massive, Unsegmented Datastreams. ML 1992: 224-232
Coauthor Index
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