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Publication search results
found 31 matches
- 2023
- Alessio Del Conte, Alexander Miguel Monzon, Damiano Clementel, Giorgia F. Camagni, Giovanni Minervini, Silvio C. E. Tosatto, Damiano Piovesan:
RING-PyMOL: residue interaction networks of structural ensembles and molecular dynamics. Bioinform. 39(5) (2023) - Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös, Silvio C. E. Tosatto, Damiano Piovesan:
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. Nucleic Acids Res. 51(W1): 62-69 (2023) - Damiano Piovesan, Alessio Del Conte, Damiano Clementel, Alexander Miguel Monzon, Martina Bevilacqua, Maria Cristina Aspromonte, Javier Iserte, Fernando E. Orti, Cristina Marino Buslje, Silvio C. E. Tosatto:
MobiDB: 10 years of intrinsically disordered proteins. Nucleic Acids Res. 51(D1): 438-444 (2023) - Damiano Piovesan, Davide Zago, Parnal Joshi, M. Clara De Paolis Kaluza, Alexander Miguel Monzon, Walter Reade, Iddo Friedberg, Predrag Radivojac, Silvio C. E. Tosatto:
CAFA-evaluator: A Python Tool for Benchmarking Ontological Classification Methods. CoRR abs/2310.06881 (2023) - 2022
- Nahuel Escobedo, Ronaldo Romario Tunque Cahui, Gastón Caruso, Emilio Garcia-Rios, Layla Hirsh, Alexander Miguel Monzon, Gustavo D. Parisi, Nicolas Palopoli:
CoDNaS-Q: a database of conformational diversity of the native state of proteins with quaternary structure. Bioinform. 38(21): 4959-4961 (2022) - Luisa Brinkschulte, Stephan Schlögl, Alexander Monz, Pascal Schöttle, Matthias Janetschek:
Perspectives on Socially Intelligent Conversational Agents. Multimodal Technol. Interact. 6(8): 62 (2022) - Damiano Clementel, Alessio Del Conte, Alexander Miguel Monzon, Giorgia F. Camagni, Giovanni Minervini, Damiano Piovesan, Silvio C. E. Tosatto:
RING 3.0: fast generation of probabilistic residue interaction networks from structural ensembles. Nucleic Acids Res. 50(W1): 651-656 (2022) - András Hatos, Alexander Miguel Monzon, Silvio C. E. Tosatto, Damiano Piovesan, Mónika Fuxreiter:
FuzDB: a new phase in understanding fuzzy interactions. Nucleic Acids Res. 50(D1): 509-517 (2022) - Federica Quaglia, Bálint Mészáros, Edoardo Salladini, András Hatos, Rita Pancsa, Lucía B. Chemes, Mátyás Pajkos, Tamas Lazar, Samuel Peña-Díaz, Jaime Santos, Veronika Ács, Nazanin Farahi, Erzsébet Fichó, Maria Cristina Aspromonte, Claudio Bassot, Anastasia Chasapi, Norman E. Davey, Radoslav Davidovic, Laszlo Dobson, Arne Elofsson, Gábor Erdös, Pascale Gaudet, Michelle G. Giglio, Juliana Glavina, Javier Iserte, Valentín Iglesias, Zsófia L. Kálmán, Matteo Lambrughi, Emanuela Leonardi, Sonia Longhi, Sandra Macedo-Ribeiro, Emiliano Maiani, Julia Marchetti, Cristina Marino Buslje, Attila Meszaros, Alexander Miguel Monzon, Giovanni Minervini, Suvarna Nadendla, Juliet F. Nilsson, Marián Novotný, Christos A. Ouzounis, Nicolas Palopoli, Elena Papaleo, Pedro J. Barbosa Pereira, Gabriele Pozzati, Vasilis J. Promponas, Jordi Pujols, Alma Carolina Sanchez Rocha, Martin Salas, Luciana Rodriguez Sawicki, Éva Schád, Aditi Shenoy, Tamás Szaniszló, Konstantinos D. Tsirigos, Nevena Veljkovic, Gustavo D. Parisi, Salvador Ventura, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan:
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. Nucleic Acids Res. 50(D1): 480-487 (2022) - Amit Kumar Pal, Philipp Schindler, Alexander Erhard, Ángel Rivas, Miguel-Angel Martin-Delgado, Rainer Blatt, Thomas Monz, Markus Müller:
Relaxation times do not capture logical qubit dynamics. Quantum 6: 632 (2022) - Philipp Koehn, Loïc Barrault, Ondrej Bojar, Fethi Bougares, Rajen Chatterjee, Marta R. Costa-jussà, Christian Federmann, Mark Fishel, Alexander Fraser, Markus Freitag, Yvette Graham, Roman Grundkiewicz, Paco Guzman, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Tom Kocmi, André Martins, Makoto Morishita, Christof Monz, Masaaki Nagata, Toshiaki Nakazawa, Matteo Negri, Aurélie Névéol, Mariana Neves, Martin Popel, Marco Turchi, Marcos Zampieri:
Proceedings of the Seventh Conference on Machine Translation, WMT 2022, Abu Dhabi, United Arab Emirates (Hybrid), December 7-8, 2022. Association for Computational Linguistics 2022, ISBN 978-1-959429-29-6 [contents] - 2021
- Travis S. Humble, Alexander J. McCaskey, Dmitry I. Lyakh, Meenambika Gowrishankar, Albert Frisch, Thomas Monz:
Quantum Computers for High-Performance Computing. IEEE Micro 41(5): 15-23 (2021) - Lisanna Paladin, Martina Bevilacqua, Sara Errigo, Damiano Piovesan, Ivan Micetic, Marco Necci, Alexander Miguel Monzon, Maria Laura Fabre, José Luis López, Juliet F. Nilsson, Javier Ríos, Pablo Lorenzano Menna, Maia Cabrera, Martin Gonzalez Buitron, Mariane Gonçalves Kulik, Sebastian Fernandez Alberti, María Silvina Fornasari, Gustavo D. Parisi, Antonio Lagares, Layla Hirsh, Miguel A. Andrade-Navarro, Andrey V. Kajava, Silvio C. E. Tosatto:
RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures. Nucleic Acids Res. 49(Database-Issue): D452-D457 (2021) - Damiano Piovesan, Marco Necci, Nahuel Escobedo, Alexander Miguel Monzon, András Hatos, Ivan Micetic, Federica Quaglia, Lisanna Paladin, Pathmanaban Ramasamy, Zsuzsanna Dosztányi, Wim F. Vranken, Norman E. Davey, Gustavo D. Parisi, Mónika Fuxreiter, Silvio C. E. Tosatto:
MobiDB: intrinsically disordered proteins in 2021. Nucleic Acids Res. 49(Database-Issue): D361-D367 (2021) - Loïc Barrault, Ondrej Bojar, Fethi Bougares, Rajen Chatterjee, Marta R. Costa-jussà, Christian Federmann, Mark Fishel, Alexander Fraser, Markus Freitag, Yvette Graham, Roman Grundkiewicz, Paco Guzman, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, Tom Kocmi, André Martins, Makoto Morishita, Christof Monz:
Proceedings of the Sixth Conference on Machine Translation, WMT@EMNLP 2021, Online Event, November 10-11, 2021. Association for Computational Linguistics 2021, ISBN 978-1-954085-94-7 [contents] - Natascha Mariacher, Stephan Schlögl, Alexander Monz:
Investigating Perceptions of Social Intelligence in Simulated Human-Chatbot Interactions. CoRR abs/2104.13823 (2021) - 2020
- Matias Sebastian Carletti, Alexander Miguel Monzon, Emilio Garcia-Rios, Guillermo I. Benítez, Layla Hirsh, María Silvina Fornasari, Gustavo D. Parisi:
Revenant: a database of resurrected proteins. Database J. Biol. Databases Curation 2020 (2020) - András Hatos, Borbála Hajdu-Soltész, Alexander Miguel Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykaç Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi, Lucía B. Chemes, Norman E. Davey, Radoslav Davidovic, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy, Tamás Horváth, Valentin Iglesias, Andrey V. Kajava, Orsolya P. Kovács, John Lamb, Matteo Lambrughi, Tamas Lazar, Jeremy Y. Leclercq, Emanuela Leonardi, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Emiliano Maiani, José A. Manso, Cristina Marino Buslje, Elizabeth Martínez-Pérez, Bálint Mészáros, Ivan Micetic, Giovanni Minervini, Nikoletta Murvai, Marco Necci, Christos A. Ouzounis, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo, Gustavo D. Parisi, Emilie Pasche, Pedro J. Barbosa Pereira, Vasilis J. Promponas, Jordi Pujols, Federica Quaglia, Patrick Ruch, Marco Salvatore, Éva Schád, Beáta Szabó, Tamás Szaniszló, Stella Tamana, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan:
DisProt: intrinsic protein disorder annotation in 2020. Nucleic Acids Res. 48(Database-Issue): D269-D276 (2020) - Damiano Piovesan, András Hatos, Giovanni Minervini, Federica Quaglia, Alexander Miguel Monzon, Silvio C. E. Tosatto:
Assessing predictors for new post translational modification sites: A case study on hydroxylation. PLoS Comput. Biol. 16(6) (2020) - Loïc Barrault, Ondrej Bojar, Fethi Bougares, Rajen Chatterjee, Marta R. Costa-jussà, Christian Federmann, Mark Fishel, Alexander Fraser, Yvette Graham, Paco Guzman, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, André Martins, Makoto Morishita, Christof Monz, Masaaki Nagata, Toshiaki Nakazawa, Matteo Negri:
Proceedings of the Fifth Conference on Machine Translation, WMT@EMNLP 2020, Online, November 19-20, 2020. Association for Computational Linguistics 2020, ISBN 978-1-948087-81-0 [contents] - 2019
- Cristina Marino Buslje, Alexander Miguel Monzon, Diego Javier Zea, María Silvina Fornasari, Gustavo D. Parisi:
On the dynamical incompleteness of the Protein Data Bank. Briefings Bioinform. 20(1): 356-359 (2019) - 2018
- Mehedi Hassan, Aishwarya Alex Namasivayam, Dan F. DeBlasio, Nazeefa Fatima, Benjamin Siranosian, R. Gonzalo Parra, Bart Cuypers, Sayane Shome, Alexander Miguel Monzon, Julien Fumey, Farzana Rahman:
Reflections on a journey: a retrospective of the ISCB Student Council symposium series. BMC Bioinform. 19-S(12): 347:1-347:8 (2018) - Ana Julia Velez Rueda, Alexander Miguel Monzon, Sebastián M. Ardanaz, Luis E. Iglesias, Gustavo D. Parisi:
Large scale analysis of protein conformational transitions from aqueous to non-aqueous media. BMC Bioinform. 19(1): 27:1-27:10 (2018) - Damiano Piovesan, Francesco Tabaro, Lisanna Paladin, Marco Necci, Ivan Micetic, Carlo Camilloni, Norman E. Davey, Zsuzsanna Dosztányi, Bálint Mészáros, Alexander Miguel Monzon, Gustavo D. Parisi, Éva Schád, Pietro Sormanni, Peter Tompa, Michele Vendruscolo, Wim F. Vranken, Silvio C. E. Tosatto:
MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins. Nucleic Acids Res. 46(Database-Issue): D471-D476 (2018) - 2017
- Alexander Miguel Monzon, Diego J. Zea, María Silvina Fornasari, Tadeo E. Saldaño, Sebastian Fernandez Alberti, Silvio C. E. Tosatto, Gustavo D. Parisi:
Conformational diversity analysis reveals three functional mechanisms in proteins. PLoS Comput. Biol. 13(2) (2017) - Natascha Mariacher, Stephan Schlögl, Alexander Monz:
Investigating Perceptions of Social Intelligence in Simulated Human-Chatbot Interactions. IIH-MSP (1) 2017: 513-529 - 2016
- Alexander Miguel Monzon, Cristian Oscar Rohr, María Silvina Fornasari, Gustavo D. Parisi:
CoDNaS 2.0: a comprehensive database of protein conformational diversity in the native state. Database J. Biol. Databases Curation 2016 (2016) - Tadeo E. Saldaño, Alexander Miguel Monzon, Gustavo D. Parisi, Sebastian Fernandez Alberti:
Evolutionary Conserved Positions Define Protein Conformational Diversity. PLoS Comput. Biol. 12(3) (2016) - 2013
- Alexander Miguel Monzon, Ezequiel I. Juritz, María Silvina Fornasari, Gustavo D. Parisi:
CoDNaS: a database of conformational diversity in the native state of proteins. Bioinform. 29(19): 2512-2514 (2013) - 2003
- Karl-Heinz Küfer, Alexander Scherrer, Michael Monz, Fernando Alonso, Hans L. Trinkaus, Thomas Bortfeld, Christian Thieke:
Intensity-modulated radiotherapy - a large scale multi-criteria programming problem. OR Spectr. 25(2): 223-249 (2003)
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