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ORCIDAntonio Jimeno-Yepes
Antonio José Jimeno-Yepes
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- affiliation: IBM Research, Melbourne, Australia
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2020 – today
- 2024
[c72]Zhenhao Zhang, Yuxi Liu, Jiang Bian, Antonio Jimeno-Yepes, Jun Shen
, Fuyi Li, Guodong Long, Flora D. Salim:
Boosting Patient Representation Learning via Graph Contrastive Learning. ECML/PKDD (9) 2024: 335-350- [i24]Antonio Jimeno-Yepes, Yao You, Jan Milczek, Sebastian Laverde, Renyu Li:
Financial Report Chunking for Effective Retrieval Augmented Generation. CoRR abs/2402.05131 (2024) - 2023
- [j35]Antonio José Jimeno-Yepes, Karin Verspoor:
Classifying literature mentions of biological pathogens as experimentally studied using natural language processing. J. Biomed. Semant. 14(1): 1 (2023) - [c71]Yuxi Liu, Zhenhao Zhang, Campbell Thompson, Richard Leibbrandt, Shaowen Qin, Antonio Jimeno-Yepes:
Stacked Attention-based Networks for Accurate and Interpretable Health Risk Prediction. IJCNN 2023: 1-8 - [c70]Dwarikanath Mahapatra, Antonio José Jimeno-Yepes, Shiba Kuanar, Sudipta Roy, Behzad Bozorgtabar, Mauricio Reyes, Zongyuan Ge:
Class Specific Feature Disentanglement and Text Embeddings for Multi-label Generalized Zero Shot CXR Classification. MICCAI (2) 2023: 276-286 - [c69]Yuxi Liu, Zhenhao Zhang, Shaowen Qin, Flora D. Salim, Antonio Jimeno-Yepes:
Contrastive Learning-Based Imputation-Prediction Networks for In-hospital Mortality Risk Modeling Using EHRs. ECML/PKDD (6) 2023: 428-443 - [c68]Mariana L. Neves, Antonio Jimeno-Yepes, Aurélie Névéol, Rachel Bawden, Giorgio Maria Di Nunzio, Roland Roller, Philippe Thomas, Federica Vezzani, Maika Vicente Navarro, Lana Yeganova, Dina Wiemann, Cristian Grozea:
Findings of the WMT 2023 Biomedical Translation Shared Task: Evaluation of ChatGPT 3.5 as a Comparison System. WMT 2023: 43-54 - [i23]Yuxi Liu, Zhenhao Zhang, Shaowen Qin, Flora D. Salim, Antonio Jimeno-Yepes:
Contrastive Learning-based Imputation-Prediction Networks for In-hospital Mortality Risk Modeling using EHRs. CoRR abs/2308.09896 (2023) - [i22]Yuxi Liu, Zhenhao Zhang, Shaowen Qin, Flora D. Salim, Antonio Jimeno-Yepes, Jun Shen:
Hypergraph Convolutional Networks for Fine-grained ICU Patient Similarity Analysis and Risk Prediction. CoRR abs/2308.12575 (2023) - 2022
- [j34]Qingyu Chen, Alexis Allot, Robert Leaman, Rezarta Islamaj, Jingcheng Du, Li Fang, Wang Kai, Shuo Xu, Yuefu Zhang, Parsa Bagherzadeh, Sabine Bergler, Aakash Bhatnagar, Nidhir Bhavsar, Yung-Chun Chang, Sheng-Jie Lin, Wentai Tang, Hongtong Zhang, Ilija Tavchioski, Senja Pollak, Shubo Tian, Jinfeng Zhang, Yulia Otmakhova, Antonio Jimeno-Yepes, Hang Dong, Honghan Wu, Richard Dufour, Yanis Labrak, Niladri Chatterjee, Kushagri Tandon, Fréjus A. A. Laleye, Loïc Rakotoson, Emmanuele Chersoni, Jinghang Gu, Annemarie Friedrich, Subhash Chandra Pujari, Mariia Chizhikova, Naveen Sivadasan, Saipradeep Vg, Zhiyong Lu:
Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations. Database J. Biol. Databases Curation 2022(2022) (2022) - [c67]Antonio Jimeno-Yepes, Karin Verspoor:
Distinguishing between focus and background entities in biomedical corpora using discourse structure and transformers. LOUHI@EMNLP 2022: 35-40 - [c66]Yuxi Liu, Zhenhao Zhang, Antonio Jimeno-Yepes, Flora D. Salim:
Modeling long-term dependencies and short-term correlations in patient journey data with temporal attention networks for health prediction. BCB 2022: 16:1-16:10 - [c65]Yuxi Liu, Shaowen Qin, Antonio Jimeno-Yepes, Wei Shao, Zhenhao Zhang, Flora D. Salim:
Integrated Convolutional and Recurrent Neural Networks for Health Risk Prediction using Patient Journey Data with Many Missing Values. BIBM 2022: 1658-1663 - [c64]Antonio Jimeno-Yepes, Karin Verspoor:
READ-BioMed@SocialDisNER: Adaptation of an Annotation System to Spanish Tweets. SMM4H@COLING 2022: 48-51 - [c63]Yulia Otmakhova, Karin Verspoor, Timothy Baldwin, Antonio Jimeno-Yepes, Jey Han Lau:
M3: Multi-level dataset for Multi-document summarisation of Medical studies. EMNLP (Findings) 2022: 3887-3901 - [c62]Antonio Jimeno-Yepes, Karin Verspoor:
The READ-BioMed Team in LivingNER Task 1 (2022): Adaptation of an English Annotation System to Spanish. IberLEF@SEPLN 2022 - [c61]Mariana Neves, Antonio Jimeno-Yepes, Amy Siu, Roland Roller, Philippe Thomas, Maika Vicente Navarro, Lana Yeganova, Dina Wiemann, Giorgio Maria Di Nunzio, Federica Vezzani, Christel Gérardin, Rachel Bawden, Darryl Estrada, Salvador Lima-López, Eulàlia Farré-Maduell, Martin Krallinger, Cristian Grozea, Aurélie Névéol:
Findings of the WMT 2022 Biomedical Translation Shared Task: Monolingual Clinical Case Reports. WMT 2022: 694-723 - [e14]Alberto Lavelli, Eben Holderness, Antonio Jimeno-Yepes, Anne-Lyse Minard, James Pustejovsky, Fabio Rinaldi:
Proceedings of the 13th International Workshop on Health Text Mining and Information Analysis, LOUHI@EMNLP 2022, Abu Dhabi, United Arab Emirates (Hybrid), December 7, 2022. Association for Computational Linguistics 2022, ISBN 978-1-959429-13-5 [contents] - [e13]Philipp Koehn, Loïc Barrault, Ondrej Bojar, Fethi Bougares, Rajen Chatterjee, Marta R. Costa-jussà, Christian Federmann, Mark Fishel, Alexander Fraser, Markus Freitag, Yvette Graham, Roman Grundkiewicz, Paco Guzman, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Tom Kocmi, André Martins, Makoto Morishita, Christof Monz, Masaaki Nagata, Toshiaki Nakazawa, Matteo Negri, Aurélie Névéol, Mariana Neves, Martin Popel, Marco Turchi, Marcos Zampieri:
Proceedings of the Seventh Conference on Machine Translation, WMT 2022, Abu Dhabi, United Arab Emirates (Hybrid), December 7-8, 2022. Association for Computational Linguistics 2022, ISBN 978-1-959429-29-6 [contents] - [d1]Antonio Jimeno-Yepes, Karin Verspoor:
Identification of focus versus background entities in scientific literature. Zenodo, 2022
- [i21]Antonio Jimeno-Yepes:
Hyperplane bounds for neural feature mappings. CoRR abs/2201.05799 (2022) - [i20]Qingyu Chen, Alexis Allot, Robert Leaman, Rezarta Islamaj Dogan, Jingcheng Du, Li Fang, Wang Kai, Shuo Xu, Yuefu Zhang, Parsa Bagherzadeh, Sabine Bergler, Aakash Bhatnagar, Nidhir Bhavsar, Yung-Chun Chang, Sheng-Jie Lin, Wentai Tang, Hongtong Zhang, Ilija Tavchioski, Shubo Tian, Jinfeng Zhang, Yulia Otmakhova, Antonio Jimeno-Yepes, Hang Dong, Honghan Wu, Richard Dufour, Yanis Labrak, Niladri Chatterjee, Kushagri Tandon, Fréjus A. A. Laleye, Loïc Rakotoson, Emmanuele Chersoni, Jinghang Gu, Annemarie Friedrich, Subhash Chandra Pujari, Mariia Chizhikova, Naveen Sivadasan, Zhiyong Lu:
Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations. CoRR abs/2204.09781 (2022) - [i19]Yuxi Liu, Zhenhao Zhang, Antonio Jimeno-Yepes, Flora D. Salim:
Modeling Long-term Dependencies and Short-term Correlations in Patient Journey Data with Temporal Attention Networks for Health Prediction. CoRR abs/2207.06414 (2022) - [i18]Yuxi Liu, Shaowen Qin, Antonio Jimeno-Yepes, Wei Shao, Zhenhao Zhang, Flora D. Salim:
Integrated Convolutional and Recurrent Neural Networks for Health Risk Prediction using Patient Journey Data with Many Missing Values. CoRR abs/2211.06045 (2022) - 2021
- [j33]Peiliang Lou, Yuxin Dong, Antonio Jimeno-Yepes, Chen Li:
A representation model for biological entities by fusing structured axioms with unstructured texts. Bioinform. 37(8): 1156-1163 (2021) - [c60]Karin Verspoor, Simon Suster, Yulia Otmakhova, Shevon Mendis, Zenan Zhai, Biaoyan Fang, Jey Han Lau, Timothy Baldwin, Antonio Jimeno-Yepes, David Martínez:
Brief Description of COVID-SEE: The Scientific Evidence Explorer for COVID-19 Related Research. ECIR (2) 2021: 559-564 - [c59]Antonio Jimeno-Yepes, Peter Zhong, Douglas Burdick:
ICDAR 2021 Competition on Scientific Literature Parsing. ICDAR (4) 2021: 605-617 - [c58]Simon Suster, Karin Verspoor, Timothy Baldwin, Jey Han Lau, Antonio Jimeno-Yepes, David Martinez Iraola, Yulia Otmakhova:
Impact of detecting clinical trial elements in exploration of COVID-19 literature. ICHI 2021: 495-496 - [c57]Ying Xu, Xu Zhong, Antonio Jimeno-Yepes, Jey Han Lau:
Grey-box Adversarial Attack And Defence For Sentiment Classification. NAACL-HLT 2021: 4078-4087 - [c56]Lana Yeganova, Dina Wiemann, Mariana L. Neves, Federica Vezzani, Amy Siu, Inigo Jauregi Unanue, Maite Oronoz, Nancy Mah, Aurélie Névéol, David Martínez, Rachel Bawden, Giorgio Maria Di Nunzio, Roland Roller, Philippe Thomas, Cristian Grozea, Olatz Perez-de-Viñaspre, Maika Vicente Navarro, Antonio Jimeno-Yepes:
Findings of the WMT 2021 Biomedical Translation Shared Task: Summaries of Animal Experiments as New Test Set. WMT@EMNLP 2021: 664-683 - [e12]Eben Holderness, Antonio Jimeno-Yepes, Alberto Lavelli, Anne-Lyse Minard, James Pustejovsky, Fabio Rinaldi:
Proceedings of the 12th International Workshop on Health Text Mining and Information Analysis, LOUHI@EACL, Online, April 19, 2021. Association for Computational Linguistics 2021, ISBN 978-1-954085-16-9 [contents] - [e11]Loïc Barrault, Ondrej Bojar, Fethi Bougares, Rajen Chatterjee, Marta R. Costa-jussà, Christian Federmann, Mark Fishel, Alexander Fraser, Markus Freitag, Yvette Graham, Roman Grundkiewicz, Paco Guzman, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, Tom Kocmi, André Martins, Makoto Morishita, Christof Monz:
Proceedings of the Sixth Conference on Machine Translation, WMT@EMNLP 2021, Online Event, November 10-11, 2021. Association for Computational Linguistics 2021, ISBN 978-1-954085-94-7 [contents] - [i17]Stefan Maetschke, David Martinez Iraola, Pieter Barnard, Elaheh ShafieiBavani, Peter Zhong, Ying Xu, Antonio Jimeno-Yepes:
Understanding in Artificial Intelligence. CoRR abs/2101.06573 (2021) - [i16]David Martinez Iraola, Antonio Jimeno-Yepes:
Single versus Multiple Annotation for Named Entity Recognition of Mutations. CoRR abs/2101.07450 (2021) - [i15]Ying Xu, Xu Zhong, Antonio Jimeno-Yepes, Jey Han Lau:
Grey-box Adversarial Attack And Defence For Sentiment Classification. CoRR abs/2103.11576 (2021) - [i14]Simon Suster, Karin Verspoor, Timothy Baldwin, Jey Han Lau, Antonio Jimeno-Yepes, David Martínez, Yulia Otmakhova:
Impact of detecting clinical trial elements in exploration of COVID-19 literature. CoRR abs/2105.12261 (2021) - [i13]Antonio Jimeno-Yepes, Xu Zhong, Douglas Burdick:
ICDAR 2021 Competition on Scientific Literature Parsing. CoRR abs/2106.14616 (2021) - 2020
- [j32]Peiliang Lou, Antonio Jimeno-Yepes, Zai Zhang, Qinghua Zheng, Xiangrong Zhang, Chen Li:
BioNorm: deep learning-based event normalization for the curation of reaction databases. Bioinform. 36(2): 611-620 (2020) - [j31]Corey Sutphin, Kahyun Lee, Antonio Jimeno-Yepes, Özlem Uzuner, Bridget T. McInnes:
Adverse drug event detection using reason assignments in FDA drug labels. J. Biomed. Informatics 110: 103552 (2020) - [c55]Ying Xu, André Leier, Tatiana T. Marquez-Lago, Jue Xie, Antonio Jimeno-Yepes, James C. Whisstock, Campbell Wilson, Jiangning Song:
Prediction of secondary structure population and intrinsic disorder of proteins using multitask deep learning. AMIA 2020 - [c54]Elaheh ShafieiBavani, Antonio Jimeno-Yepes, Xu Zhong, David Martínez:
Global Locality in Biomedical Relation and Event Extraction. BioNLP 2020: 195-204 - [c53]Xu Zhong, Elaheh ShafieiBavani, Antonio Jimeno-Yepes:
Image-Based Table Recognition: Data, Model, and Evaluation. ECCV (21) 2020: 564-580 - [c52]Ying Xu, Xu Zhong, Antonio José Jimeno-Yepes, Jey Han Lau:
Forget Me Not: Reducing Catastrophic Forgetting for Domain Adaptation in Reading Comprehension. IJCNN 2020: 1-8 - [c51]Aurélie Névéol, Antonio Jimeno-Yepes, Mariana L. Neves:
MEDLINE as a Parallel Corpus: a Survey to Gain Insight on French-, Spanish- and Portuguese-speaking Authors' Abstract Writing Practice. LREC 2020: 3676-3682 - [c50]Rachel Bawden, Giorgio Maria Di Nunzio, Cristian Grozea, Inigo Jauregi Unanue, Antonio Jimeno-Yepes, Nancy Mah, David Martínez, Aurélie Névéol, Mariana L. Neves, Maite Oronoz, Olatz Perez-de-Viñaspre, Massimo Piccardi, Roland Roller, Amy Siu, Philippe Thomas, Federica Vezzani, Maika Vicente Navarro, Dina Wiemann, Lana Yeganova:
Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages. WMT@EMNLP 2020: 660-687 - [e10]Eben Holderness, Antonio Jimeno-Yepes, Alberto Lavelli, Anne-Lyse Minard, James Pustejovsky, Fabio Rinaldi:
Proceedings of the 11th International Workshop on Health Text Mining and Information Analysis, LOUHI@EMNLP 2020, Online, November 20, 2020. Association for Computational Linguistics 2020, ISBN 978-1-952148-81-1 [contents] - [e9]Loïc Barrault, Ondrej Bojar, Fethi Bougares, Rajen Chatterjee, Marta R. Costa-jussà, Christian Federmann, Mark Fishel, Alexander Fraser, Yvette Graham, Paco Guzman, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, André Martins, Makoto Morishita, Christof Monz, Masaaki Nagata, Toshiaki Nakazawa, Matteo Negri:
Proceedings of the Fifth Conference on Machine Translation, WMT@EMNLP 2020, Online, November 19-20, 2020. Association for Computational Linguistics 2020, ISBN 978-1-948087-81-0 [contents] - [i12]Ying Xu, Xu Zhong, Antonio José Jimeno-Yepes, Jey Han Lau:
Elephant in the Room: An Evaluation Framework for Assessing Adversarial Examples in NLP. CoRR abs/2001.07820 (2020) - [i11]Karin Verspoor, Simon Suster, Yulia Otmakhova, Shevon Mendis, Zenan Zhai, Biaoyan Fang, Jey Han Lau, Timothy Baldwin, Antonio Jimeno-Yepes, David Martínez:
COVID-SEE: Scientific Evidence Explorer for COVID-19 Related Research. CoRR abs/2008.07880 (2020)
2010 – 2019
- 2019
- [c49]Elaheh ShafieiBavani, Antonio Jimeno-Yepes:
Neural Relation Extraction from Biomedical Literature. AMIA 2019 - [c48]Xu Zhong, Jianbin Tang, Antonio Jimeno-Yepes:
PubLayNet: Largest Dataset Ever for Document Layout Analysis. ICDAR 2019: 1015-1022 - [c47]Rachel Bawden, Kevin Bretonnel Cohen, Cristian Grozea, Antonio Jimeno-Yepes, Madeleine Kittner, Martin Krallinger, Nancy Mah, Aurélie Névéol, Mariana L. Neves, Felipe Soares, Amy Siu, Karin Verspoor, Maika Vicente Navarro:
Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies. WMT (3) 2019: 29-53 - [e8]Eben Holderness, Antonio Jimeno-Yepes, Alberto Lavelli, Anne-Lyse Minard, James Pustejovsky, Fabio Rinaldi:
Proceedings of the Tenth International Workshop on Health Text Mining and Information Analysis LOUHI@EMNLP 2019, Hong Kong, November 3, 2019. Association for Computational Linguistics 2019, ISBN 978-1-950737-77-2 [contents] - [e7]Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, André Martins, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Marco Turchi, Karin Verspoor:
Proceedings of the Fourth Conference on Machine Translation, WMT 2019, Florence, Italy, August 1-2, 2019 - Volume 1: Research Papers. Association for Computational Linguistics 2019, ISBN 978-1-950737-27-7 [contents] - [e6]Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, André Martins, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Marco Turchi, Karin Verspoor:
Proceedings of the Fourth Conference on Machine Translation, WMT 2019, Florence, Italy, August 1-2, 2019 - Volume 2: Shared Task Papers, Day 1. Association for Computational Linguistics 2019 [contents] - [e5]Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, André Martins, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Marco Turchi, Karin Verspoor:
Proceedings of the Fourth Conference on Machine Translation, WMT 2019, Florence, Italy, August 1-2, 2019 - Volume 3: Shared Task Papers, Day 2. Association for Computational Linguistics 2019 [contents] - [i10]Xu Zhong, Jianbin Tang, Antonio Jimeno-Yepes:
PubLayNet: largest dataset ever for document layout analysis. CoRR abs/1908.07836 (2019) - [i9]Elaheh ShafieiBavani, Antonio Jimeno-Yepes, Xu Zhong:
Global Locality in Event Extraction. CoRR abs/1909.04822 (2019) - [i8]Xu Zhong, Elaheh ShafieiBavani, Antonio Jimeno-Yepes:
Image-based table recognition: data, model, and evaluation. CoRR abs/1911.10683 (2019) - 2018
- [j30]Jianbin Tang, Benjamin Scott Mashford, Antonio Jimeno-Yepes:
Semantic Labeling Using a Low-Power Neuromorphic Platform. IEEE Geosci. Remote. Sens. Lett. 15(8): 1184-1188 (2018) - [c46]Antonio Jimeno-Yepes, Andrew D. MacKinlay, Natalie Gunn, Christine Schieber, Noel Faux, Matthew Downton, Benjamin Goudey, Richard L. Martin:
A hybrid approach for automated mutation annotation of the extended human mutation landscape in scientific literature. AMIA 2018 - [c45]Rafael Berlanga Llavori, Antonio Jimeno-Yepes, María Pérez, Indira Lanza-Cruz:
Coarse-grained Semantic Characterization of Large Knowledge Resources. CERI 2018: 16:1-16:4 - [c44]Aurélie Névéol, Antonio Jimeno-Yepes, Mariana L. Neves, Karin Verspoor:
Parallel Corpora for the Biomedical Domain. LREC 2018 - [c43]Mariana L. Neves, Antonio Jimeno-Yepes, Aurélie Névéol, Cristian Grozea, Amy Siu, Madeleine Kittner, Karin Verspoor:
Findings of the WMT 2018 Biomedical Translation Shared Task: Evaluation on Medline test sets. WMT (shared task) 2018: 324-339 - [e4]Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Lucia Specia, Marco Turchi, Karin Verspoor:
Proceedings of the Third Conference on Machine Translation: Research Papers, WMT 2018, Belgium, Brussels, October 31 - November 1, 2018. Association for Computational Linguistics 2018, ISBN 978-1-948087-81-0 [contents] - [e3]Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Mark Fishel, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Matt Post, Lucia Specia, Marco Turchi, Karin Verspoor:
Proceedings of the Third Conference on Machine Translation: Shared Task Papers, WMT 2018, Belgium, Brussels, October 31 - November 1, 2018. Association for Computational Linguistics 2018, ISBN 978-1-948087-81-0 [contents] - [i7]Antonio Jimeno-Yepes:
Confidence penalty, annealing Gaussian noise and zoneout for biLSTM-CRF networks for named entity recognition. CoRR abs/1808.04029 (2018) - 2017
- [j29]Benjamin S. Mashford, Antonio Jimeno-Yepes, Isabell Kiral-Kornek, Jianbin Tang, Stefan Harrer:
Neural-network-based analysis of EEG data using the neuromorphic TrueNorth chip for brain-machine interfaces. IBM J. Res. Dev. 61(2/3): 7:1-7:6 (2017) - [j28]Antonio Jimeno-Yepes:
Word embeddings and recurrent neural networks based on Long-Short Term Memory nodes in supervised biomedical word sense disambiguation. J. Biomed. Informatics 73: 137-147 (2017) - [c42]Andrew MacKinlay, Hafsah Aamer, Antonio Jimeno-Yepes:
Detection of adverse drug reactions using medical named entities on Twitter. AMIA 2017 - [c41]Akm Sabbir, Antonio Jimeno-Yepes, Ramakanth Kavuluru:
Knowledge-Based Biomedical Word Sense Disambiguation with Neural Concept Embeddings. BIBE 2017: 163-170 - [c40]Antonio Jimeno-Yepes, Jianbin Tang, Benjamin Scott Mashford:
Improving Classification Accuracy of Feedforward Neural Networks for Spiking Neuromorphic Chips. IJCAI 2017: 1973-1979 - [c39]Quan Tran, Andrew MacKinlay, Antonio Jimeno-Yepes:
Named Entity Recognition with Stack Residual LSTM and Trainable Bias Decoding. IJCNLP(1) 2017: 566-575 - [c38]Antonio Jimeno-Yepes, Aurélie Névéol, Mariana L. Neves, Karin Verspoor, Ondrej Bojar, Arthur Boyer, Cristian Grozea, Barry Haddow, Madeleine Kittner, Yvonne Lichtblau, Pavel Pecina, Roland Roller, Rudolf Rosa, Amy Siu, Philippe Thomas, Saskia Trescher:
Findings of the WMT 2017 Biomedical Translation Shared Task. WMT 2017: 234-247 - [e2]Ondrej Bojar, Christian Buck, Rajen Chatterjee, Christian Federmann, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, Julia Kreutzer:
Proceedings of the Second Conference on Machine Translation, WMT 2017, Copenhagen, Denmark, September 7-8, 2017. Association for Computational Linguistics 2017, ISBN 978-1-945626-96-8 [contents] - [i6]Antonio Jimeno-Yepes, Jianbin Tang, Benjamin Scott Mashford:
Improving classification accuracy of feedforward neural networks for spiking neuromorphic chips. CoRR abs/1705.07755 (2017) - [i5]Quan Tran, Andrew MacKinlay, Antonio Jimeno-Yepes:
Named Entity Recognition with stack residual LSTM and trainable bias decoding. CoRR abs/1706.07598 (2017) - 2016
- [c37]Pin Huang, Andrew MacKinlay, Antonio Jimeno-Yepes:
Syndromic Surveillance using Generic Medical Entities on Twitter. ALTA 2016: 35-44 - [c36]Bo Han, Antonio Jimeno-Yepes, Andrew MacKinlay, Lianhua Chi:
Temporal Modelling of Geospatial Words in Twitter. ALTA 2016: 133-137 - [c35]Antonio Jimeno-Yepes, Andrew MacKinlay:
NER for Medical Entities in Twitter using Sequence to Sequence Neural Networks. ALTA 2016: 138-142 - [c34]Ewan Nurse, Benjamin S. Mashford, Antonio Jimeno-Yepes, Isabell Kiral-Kornek, Stefan Harrer, Dean R. Freestone:
Decoding EEG and LFP signals using deep learning: heading TrueNorth. Conf. Computing Frontiers 2016: 259-266 - [c33]Antonio Jimeno-Yepes, Jianbin Tang, Shreya Saxena, Tobias Brosch, Arnon Amir:
Weighted Population Code for low power neuromorphic image classification. IJCNN 2016: 4294-4301 - [c32]Mariana L. Neves, Antonio Jimeno-Yepes, Aurélie Névéol:
The Scielo Corpus: a Parallel Corpus of Scientific Publications for Biomedicine. LREC 2016 - [c31]Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, Varvara Logacheva, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Martin Popel, Matt Post, Raphael Rubino, Carolina Scarton, Lucia Specia, Marco Turchi, Karin Verspoor, Marcos Zampieri:
Findings of the 2016 Conference on Machine Translation. WMT 2016: 131-198 - [i4]Antonio Jimeno-Yepes:
Higher order features and recurrent neural networks based on Long-Short Term Memory nodes in supervised biomedical word sense disambiguation. CoRR abs/1604.02506 (2016) - [i3]Antonio Jimeno-Yepes, Jianbin Tang:
Improving energy efficiency and classification accuracy of neuromorphic chips by learning binary synaptic crossbars. CoRR abs/1605.07740 (2016) - [i2]A. K. M. Sabbir, Antonio Jimeno-Yepes, Ramakanth Kavuluru:
Knowledge-Based Biomedical Word Sense Disambiguation with Neural Concept Embeddings and Distant Supervision. CoRR abs/1610.08557 (2016) - 2015
- [j27]Antonio Jimeno-Yepes, Laura Plaza, Jorge Carrillo de Albornoz, James G. Mork, Alan R. Aronson:
Feature engineering for MEDLINE citation categorization with MeSH. BMC Bioinform. 16: 113:1-113:12 (2015) - [j26]Antonio Jimeno-Yepes, Rafael Berlanga Llavori:
Knowledge based word-concept model estimation and refinement for biomedical text mining. J. Biomed. Informatics 53: 300-307 (2015) - [c30]Antonio Jimeno-Yepes, Andrew MacKinlay, Bo Han:
Investigating Public Health Surveillance using Twitter. BioNLP@IJCNLP 2015: 164-170 - [c29]Andrew MacKinlay, Antonio Jimeno-Yepes, Bo Han:
Identification and Analysis of Medical Entity Co-occurrences in Twitter. DTMBIO@CIKM 2015: 22 - [c28]Antonio Jimeno-Yepes, Andrew MacKinlay, Bo Han, Qiang Chen:
Identifying Diseases, Drugs, and Symptoms in Twitter. MedInfo 2015: 643-647 - 2014
- [j25]Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Dogan, Antonio Jimeno-Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana L. Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur:
BioC interoperability track overview. Database J. Biol. Databases Curation 2014 (2014) - [j24]Antonio Jimeno-Yepes, Karin Verspoor:
Literature mining of genetic variants for curation: quantifying the importance of supplementary material. Database J. Biol. Databases Curation 2014 (2014) - [c27]Antonio Jimeno-Yepes, Andrew MacKinlay, Justin Bedo, Rahil Garvani, Qiang Chen:
Deep Belief Networks and Biomedical Text Categorisation. ALTA 2014: 123-127 - [c26]Bo Han, Antonio Jimeno-Yepes, Andrew MacKinlay, Qiang Chen:
Identifying Twitter Location Mentions. ALTA 2014: 157-162 - [i1]Antonio Jimeno-Yepes, Karin Verspoor:
Mutation extraction tools can be combined for robust recognition of genetic variants in the literature. F1000Research 3: 18 (2014) - 2013
- [j23]Chen Li, Antonio Jimeno-Yepes, Miguel Arregui, Harald Kirsch, Dietrich Rebholz-Schuhmann:
PCorral - interactive mining of protein interactions from MEDLINE. Database J. Biol. Databases Curation 2013 (2013) - [j22]Karin Verspoor, Antonio Jimeno-Yepes, Lawrence Cavedon, Tara McIntosh, Asha Herten-Crabb, Zoë Thomas, John-Paul Plazzer:
Annotating the biomedical literature for the human variome. Database J. Biol. Databases Curation 2013 (2013) - [j21]Dietrich Rebholz-Schuhmann, Senay Kafkas, Jee-Hyub Kim, Antonio Jimeno-Yepes, Ian Lewin:
Monitoring named entity recognition: the League Table. J. Biomed. Semant. 4: 19 (2013) - [j20]Dietrich Rebholz-Schuhmann, Senay Kafkas, Jee-Hyub Kim, Chen Li, Antonio Jimeno-Yepes, Robert Hoehndorf, Rolf Backofen, Ian Lewin:
Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources. J. Biomed. Semant. 4: 28 (2013) - [j19]Antonio Jimeno-Yepes, Élise Prieur-Gaston, Aurélie Névéol:
Combining MEDLINE and publisher data to create parallel corpora for the automatic translation of biomedical text. BMC Bioinform. 14: 146 (2013) - [j18]Antonio Jimeno-Yepes, J. Caitlin Sticco, James G. Mork, Alan R. Aronson:
GeneRIF indexing: sentence selection based on machine learning. BMC Bioinform. 14: 171 (2013) - [j17]Antonio José Jimeno-Yepes, Laura Plaza, James G. Mork, Alan R. Aronson, Alberto Díaz:
MeSH indexing based on automatically generated summaries. BMC Bioinform. 14: 208 (2013) - [c25]Tatyana Shmanina, Ingrid Zukerman, Antonio Jimeno-Yepes, Lawrence Cavedon, Karin Verspoor:
Impact of Corpus Diversity and Complexity on NER Performance. ALTA 2013: 91-95 - [c24]Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson:
Comparison and combination of several MeSH indexing approaches. AMIA 2013 - [c23]Andrew MacKinlay, David Martínez, Antonio Jimeno-Yepes, Haibin Liu, W. John Wilbur, Karin Verspoor:
Extracting Biomedical Events and Modifications Using Subgraph Matching with Noisy Training Data. BioNLP@ACL (Shared Task) 2013: 35-44 - [c22]Antonio Jimeno-Yepes, James G. Mork, Alan R. Aronson:
Using the Argumentative Structure of Scientific Literature to Improve Information Access. BioNLP@ACL 2013: 102-110 - [c21]Antonio Jimeno-Yepes, James G. Mork, Alan R. Aronson:
Identifying Publication Types Using Machine Learning. BioASQ@CLEF 2013 - [c20]Rafael Berlanga Llavori, Antonio Jimeno-Yepes, María Pérez Catalán, Dietrich Rebholz-Schuhmann:
Context-Dependent Semantic Annotation in Cross-Lingual Biomedical Resources. CLEF 2013: 120-123 - [c19]