• case-insensitive prefix search: default
  e.g., sig matches "SIGIR" as well as "signal"
• exact word search: append dollar sign ($) to word
  e.g., graph$ matches "graph", but not "graphics"
• boolean and: separate words by space
  e.g., codd model
• boolean or: connect words by pipe symbol (|)
  e.g., graph|network

Update May 7, 2017: Please note that we had to disable the phrase search operator (.) and the boolean not operator (-) due to technical problems. For the time being, phrase search queries will yield regular prefix search result, and search terms preceded by a minus will be interpreted as regular (positive) search terms.

found 42 matches

• 2024
• 
  Rayyan T. Khan, Petra Pokorna, Jan Stourac, Simeon Borko, Ihor Arefiev, Joan Planas-Iglesias, Adam Dobias, Gaspar R. P. Pinto, Veronika Szotkowska, Jaroslav Sterba, Ondrej Slaby, Jirí Damborský, Stanislav Mazurenko, David Bednar:
  A computational workflow for analysis of missense mutations in precision oncology. J. Cheminformatics 16(1): 86 (2024)
• 
  Ondrej Vavra, Jonathan D. Tyzack, Farzan Haddadi, Jan Stourac, Jirí Damborský, Stanislav Mazurenko, Janet M. Thornton, David Bednar:
  Large-scale annotation of biochemically relevant pockets and tunnels in cognate enzyme-ligand complexes. J. Cheminformatics 16(1): 114 (2024)
• 
  Jirí Bednár, Jakub Náplava, Petra Barancíková, Ondrej Lisický:
  Some Like It Small: Czech Semantic Embedding Models for Industry Applications. AAAI 2024: 22734-22742
• 
  Jirí Mekyska, Katarina Safarova, Tomás Urbánek, Jirina Bednarova, Vojtech Zvoncak, Jana Marie Havigerova, Lukas Cunek, Zoltan Galaz, Jan Mucha, Christine Klauszova, Marcos Faúndez-Zanuy, Miguel A. Ferrer, Moisés Díaz:
  Graphomotor and Handwriting Disabilities Rating Scale (GHDRS):towards complex and objective assessment. CoRR abs/2405.17886 (2024)
• 2023
• 
  Milos Musil, Andrej Jezik, Jana Horackova, Simeon Borko, Petr Kabourek, Jirí Damborský, David Bednar:
  FireProt 2.0: web-based platform for the fully automated design of thermostable proteins. Briefings Bioinform. 25(1) (2023)
• 
  Jan Stourac, Simeon Borko, Rayyan T. Khan, Petra Pokorna, Adam Dobias, Joan Planas-Iglesias, Stanislav Mazurenko, Gaspar R. P. Pinto, Veronika Szotkowska, Jaroslav Sterba, Ondrej Slaby, Jirí Damborský, David Bednar:
  PredictONCO: a web tool supporting decision-making in precision oncology by extending the bioinformatics predictions with advanced computing and machine learning. Briefings Bioinform. 25(1) (2023)
• 
  Ondrej Vavra, Jakub Beránek, Jan Stourac, Martin Surkovský, Jiri Filipovic, Jirí Damborský, Jan Martinovic, David Bednar:
  pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support. Bioinform. 39(8) (2023)
• 
  Jirí Mekyska, Zoltan Galaz, Katarina Safarova, Vojtech Zvoncak, Lukas Cunek, Tomás Urbánek, Jana Marie Havigerova, Jirina Bednarova, Jan Mucha, Michal Gavenciak, Zdenek Smékal, Marcos Faúndez-Zanuy:
  Assessment of Developmental Dysgraphia Utilising a Display Tablet. IGS 2023: 21-35
• 
  Jirí Bednár, Jakub Náplava, Petra Barancíková, Ondrej Lisický:
  Some Like It Small: Czech Semantic Embedding Models for Industry Applications. CoRR abs/2311.13921 (2023)
• 2022
• 
  Joan Planas-Iglesias, Filip Opálený, Pavol Ulbrich, Jan Stourac, Zainab K. Sanusi, Gaspar R. P. Pinto, Andrea Schenkmayerova, Jan Byska, Jirí Damborský, Barbora Kozlíková, David Bednar:
  LoopGrafter: a web tool for transplanting dynamical loops for protein engineering. Nucleic Acids Res. 50(W1): 465-473 (2022)
• 
  Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar:
  PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50(D1): 534-542 (2022)
• 
  Michal Gavenciak, Vojtech Zvoncak, Jirí Mekyska, Katarina Safarova, Lukas Cunek, Tomás Urbánek, Jana Marie Havigerova, Jirina Bednarova, Zoltan Galaz, Jan Mucha:
  Exploring the Contribution of Isochrony-based Features to Computerized Assessment of Handwriting Disabilities. TSP 2022: 355-359
• 2021
• 
  Jirí Hon, Martin Marusiak, Tomás Martínek, Antonin Kunka, Jaroslav Zendulka, David Bednar, Jirí Damborský:
  SoluProt: prediction of soluble protein expression in Escherichia coli. Bioinform. 37(1): 23-28 (2021)
• 
  Jan Stourac, Juraj Dubrava, Milos Musil, Jana Horackova, Jirí Damborský, Stanislav Mazurenko, David Bednar:
  FireProtDB: database of manually curated protein stability data. Nucleic Acids Res. 49(Database-Issue): D319-D324 (2021)
• 
  Martin Pech, Jaroslav Vrchota, Jirí Bednár:
  Predictive Maintenance and Intelligent Sensors in Smart Factory: Review. Sensors 21(4): 1470 (2021)
• 2020
• 
  Zoltan Galaz, Jan Mucha, Vojtech Zvoncak, Jirí Mekyska, Zdenek Smékal, Katarina Safarova, Anezka Ondrackova, Tomás Urbánek, Jana Marie Havigerova, Jirina Bednarova, Marcos Faúndez-Zanuy:
  Advanced Parametrization of Graphomotor Difficulties in School-Aged Children. IEEE Access 8: 112883-112897 (2020)
• 
  Jan Mucha, Jirí Mekyska, Zoltan Galaz, Marcos Faúndez-Zanuy, Vojtech Zvoncak, Katarina Safarova, Tomás Urbánek, Jana Marie Havigerova, Jirina Bednarova, Zdenek Smékal:
  Analysis of Various Fractional Order Derivatives Approaches in Assessment of Graphomotor Difficulties. IEEE Access 8: 218234-218244 (2020)
• 
  Miroslav Kratochvíl, David Bednárek, Tomás Sieger, Karel Fiser, Jirí Vondrásek:
  ShinySOM: graphical SOM-based analysis of single-cell cytometry data. Bioinform. 36(10): 3288-3289 (2020)
• 
  Katarína Furmanová, Ondrej Vávra, Barbora Kozlíková, Jirí Damborský, Vojtech Vonásek, David Bednar, Jan Byska:
  DockVis: Visual Analysis of Molecular Docking Trajectories. Comput. Graph. Forum 39(6): 452-464 (2020)
• 
  Jirí Hon, Simeon Borko, Jan Stourac, Zbynek Prokop, Jaroslav Zendulka, David Bednar, Tomás Martínek, Jirí Damborský:
  EnzymeMiner: automated mining of soluble enzymes with diverse structures, catalytic properties and stabilities. Nucleic Acids Res. 48(Webserver-Issue): W104-W109 (2020)
• 
  Jiri Filipovic, Ondrej Vávra, Jan Plhak, David Bednar, Sérgio M. Marques, Jan Brezovsky, Ludek Matyska, Jirí Damborský:
  CaverDock: A Novel Method for the Fast Analysis of Ligand Transport. IEEE ACM Trans. Comput. Biol. Bioinform. 17(5): 1625-1638 (2020)
• 2019
• 
  Ondrej Vavra, Jiri Filipovic, Jan Plhak, David Bednar, Sérgio M. Marques, Jan Brezovsky, Jan Stourac, Ludek Matyska, Jirí Damborský:
  CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels. Bioinform. 35(23): 4986-4993 (2019)
• 
  Jan Stourac, Ondrej Vavra, Piia Kokkonen, Jiri Filipovic, Gaspar R. P. Pinto, Jan Brezovsky, Jirí Damborský, David Bednar:
  Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport. Nucleic Acids Res. 47(Webserver-Issue): W414-W422 (2019)
• 
  Jirí Mekyska, Jirina Bednarova, Marcos Faúndez-Zanuy, Zoltan Galaz, Katarina Safarova, Vojtech Zvoncak, Jan Mucha, Zdenek Smékal, Anezka Ondrackova, Tomás Urbánek, Jana Marie Havigerova:
  Computerised Assessment of Graphomotor Difficulties in a Cohort of School-aged Children. ICUMT 2019: 1-6
• 2018
• 
  Adam Jurcík, David Bednar, Jan Byska, Sérgio M. Marques, Katarína Furmanová, Lukas Daniel, Piia Kokkonen, Jan Brezovsky, Ondrej Strnad, Jan Stourac, Antonín Pavelka, Martin Manak, Jirí Damborský, Barbora Kozlíková:
  CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories. Bioinform. 34(20): 3586-3588 (2018)
• 
  Stanislav Mazurenko, Jan Stourac, Antonin Kunka, Sava Nedeljkovic, David Bednar, Zbynek Prokop, Jirí Damborský:
  CalFitter: a web server for analysis of protein thermal denaturation data. Nucleic Acids Res. 46(Webserver-Issue): W344-W349 (2018)
• 
  Lenka Sumbalova, Jan Stourac, Tomás Martínek, David Bednar, Jirí Damborský:
  HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information. Nucleic Acids Res. 46(Webserver-Issue): W356-W362 (2018)
• 2017
• 
  Milos Musil, Jan Stourac, Jaroslav Bendl, Jan Brezovsky, Zbynek Prokop, Jaroslav Zendulka, Tomás Martínek, David Bednar, Jirí Damborský:
  FireProt: web server for automated design of thermostable proteins. Nucleic Acids Res. 45(Webserver-Issue): W393-W399 (2017)
• 2016
• 
  René Labounek, David Janecek, Radek Marecek, Martin Lamos, Tomás Slavícek, Michal Mikl, Jaromír Bastinec, Petr Bednarik, David A. Bridwell, Milan Brazdil, Jirí Jan:
  Generalized EEG-FMRI spectral and spatiospectral heuristic models. ISBI 2016: 767-770
• 2015
• 
  David Bednar, Koen Beerens, Eva Sebestova, Jaroslav Bendl, Sagar D. Khare, Radka Chaloupkova, Zbynek Prokop, Jan Brezovsky, David Baker, Jirí Damborský:
  FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants. PLoS Comput. Biol. 11(11) (2015)

skipping 12 more matches