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Publication search results
found 74 matches
- 2024
- Reinhard C. Laubenbacher, Borna Mehrad, Ilya Shmulevich, Natalia A. Trayanova:
Digital twins in medicine. Nat. Comput. Sci. 4(3): 184-191 (2024) - Luis L. Fonseca, Lucas Böttcher, Borna Mehrad, Reinhard C. Laubenbacher:
Metamodeling and Control of Medical Digital Twins. CoRR abs/2402.05750 (2024) - Lucas Böttcher, Luis L. Fonseca, Reinhard C. Laubenbacher:
Control of Medical Digital Twins with Artificial Neural Networks. CoRR abs/2403.13851 (2024) - 2023
- Claus Kadelka, Benjamin Keilty, Reinhard C. Laubenbacher:
Collectively canalizing Boolean functions. Adv. Appl. Math. 145: 102475 (2023) - 2022
- Adam C. Knapp, Luis Sordo Vieira, Reinhard C. Laubenbacher, Julia Chifman:
SteadyCellPhenotype: a web-based tool for the modeling of biological networks with ternary logic. Bioinform. 38(8): 2369-2370 (2022) - Yara Skaf, Reinhard C. Laubenbacher:
Topological data analysis in biomedicine: A review. J. Biomed. Informatics 130: 104082 (2022) - Reinhard C. Laubenbacher, Anna Niarakis, Tomás Helikar, Gary An, B. Shapiro, Rahuman S. Malik-Sheriff, T. J. Sego, Adam C. Knapp, Paul Macklin, James A. Glazier:
Building digital twins of the human immune system: toward a roadmap. npj Digit. Medicine 5 (2022) - Karthik Chandrasekhar, Claus Kadelka, Reinhard C. Laubenbacher, David Murrugarra:
Stability of Linear Boolean Networks. CoRR abs/2209.02044 (2022) - 2021
- David J. Wooten, Jorge Gómez Tejeda Zañudo, David Murrugarra, Austin M. Perry, Anna Dongari-Bagtzoglou, Reinhard C. Laubenbacher, Clarissa J. Nobile, Réka Albert:
Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies. PLoS Comput. Biol. 17(3) (2021) - Joseph Masison, Jonathan Beezley, Yu Mei, Henrique Assis Lopes Ribeiro, Adam C. Knapp, Luis Sordo Vieira, Bandita Adhikari, Yogesh Scindia, Michael Grauer, Brian Helba, William Schroeder, Borna Mehrad, Reinhard C. Laubenbacher:
A modular computational framework for medical digital twins. Proc. Natl. Acad. Sci. USA 118(20): e2024287118 (2021) - 2020
- Elijah Paul, Gleb Pogudin, William Qin, Reinhard C. Laubenbacher:
The Dynamics of Canalizing Boolean Networks. Complex. 2020: 3687961:1-3687961:14 (2020) - Claus Kadelka, Benjamin Keilty, Reinhard C. Laubenbacher:
Collectively canalizing Boolean functions. CoRR abs/2008.13741 (2020) - 2019
- Alan Veliz-Cuba, Reinhard C. Laubenbacher:
Dynamics of semilattice networks with strongly connected dependency graph. Autom. 99: 167-174 (2019) - S. Ha, Elena S. Dimitrova, Stefan Hoops, Doaa Altarawy, Mitra Ansariola, D. Deb, Jane Glazebrook, R. Hillmer, Hossameldin Shahin, Fumiaki Katagiri, J. McDowell, Molly Megraw, João C. Setubal, B. M. Tyler, Reinhard C. Laubenbacher:
PlantSimLab - a modeling and simulation web tool for plant biologists. BMC Bioinform. 20(1): 508 (2019) - Yingqian Ada Zhan, Charles Gregory Wray, Sandeep Namburi, Spencer T. Glantz, Reinhard C. Laubenbacher, Jeffrey H. Chuang:
Fostering bioinformatics education through skill development of professors: Big Genomic Data Skills Training for Professors. PLoS Comput. Biol. 15(6) (2019) - Elijah Paul, Gleb Pogudin, William Qin, Reinhard C. Laubenbacher:
The Dynamics of Canalizing Boolean Networks. CoRR abs/1902.00056 (2019) - 2018
- Elena S. Dimitrova, Leslie A. Caromile, Reinhard C. Laubenbacher, Linda H. Shapiro:
The innate immune response to ischemic injury: a multiscale modeling perspective. BMC Syst. Biol. 12(1): 50:1-50:13 (2018) - Jason Cory Brunson, Reinhard C. Laubenbacher:
Applications of network analysis to routinely collected health care data: a systematic review. J. Am. Medical Informatics Assoc. 25(2): 210-221 (2018) - 2017
- Julia Chifman, Seda Arat, Zhiyong Deng, Erica Lemler, James C. Pino, Leonard A. Harris, Michael A. Kochen, Carlos F. Lopez, Steven A. Akman, Frank M. Torti, Suzy V. Torti, Reinhard C. Laubenbacher:
Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective. PLoS Comput. Biol. 13(2) (2017) - Claus Kadelka, Yuan Li, Jack Kuipers, John O. Adeyeye, Reinhard C. Laubenbacher:
Multistate nested canalizing functions and their networks. Theor. Comput. Sci. 675: 1-14 (2017) - 2016
- Abdelrahman Hosny, Paola Vera-Licona, Reinhard C. Laubenbacher, Thibauld Favre:
AlgoRun: a Docker-based packaging system for platform-agnostic implemented algorithms. Bioinform. 32(15): 2396-2398 (2016) - David Murrugarra, Alan Veliz-Cuba, Boris Aguilar, Reinhard C. Laubenbacher:
Identification of control targets in Boolean molecular network models via computational algebra. BMC Syst. Biol. 10: 94 (2016) - Matthew Oremland, Kathryn R. Michels, Alexandra M. Bettina, Christopher Lawrence, Borna Mehrad, Reinhard C. Laubenbacher:
A computational model of invasive aspergillosis in the lung and the role of iron. BMC Syst. Biol. 10: 34 (2016) - 2015
- Madison Brandon, Brad Howard, Christopher Lawrence, Reinhard C. Laubenbacher:
Iron acquisition and oxidative stress response in aspergillus fumigatus. BMC Syst. Biol. 9: 19 (2015) - 2014
- Alan Veliz-Cuba, Boris Aguilar, Franziska Hinkelmann, Reinhard C. Laubenbacher:
Steady state analysis of Boolean molecular network models via model reduction and computational algebra. BMC Bioinform. 15: 221 (2014) - Paola Vera-Licona, Abdul Salam Jarrah, Luis David García-Puente, John McGee, Reinhard C. Laubenbacher:
An Algebra-Based Method for Inferring Gene Regulatory Networks. BMC Syst. Biol. 8: 37 (2014) - Alan Veliz-Cuba, David Murrugarra, Reinhard C. Laubenbacher:
Structure and dynamics of acyclic networks. Discret. Event Dyn. Syst. 24(4): 647-658 (2014) - Matthew Oremland, Reinhard C. Laubenbacher:
Optimization of Agent-Based Models: Scaling Methods and Heuristic Algorithms. J. Artif. Soc. Soc. Simul. 17(2) (2014) - Jason Cory Brunson, Steve Fassino, Antonio McInnes, Monisha Narayan, Brianna Richardson, Christopher Franck, Patrick Ion, Reinhard C. Laubenbacher:
Evolutionary events in a mathematical sciences research collaboration network. Scientometrics 99(3): 973-998 (2014) - Jason Cory Brunson, Xiaoyan Wang, Reinhard C. Laubenbacher:
Evolving Collaboration Patterns in Medical Research. AMIA 2014
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