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Publication search results
found 87 matches
- 2023
- Robert D. Olson, Rida Assaf, Thomas S. Brettin, Neal Conrad, Clark Cucinell, James J. Davis
, Donald M. Dempsey, Allan Dickerman
, Emily M. Dietrich, Ronald W. Kenyon, Mehmet Kuscuoglu, Elliot J. Lefkowitz
, Jian Lu, Dustin Machi, Catherine Macken, Chunhong Mao, Anna Maria Niewiadomska, Marcus Nguyen, Gary J. Olsen, Jamie C. Overbeek, Bruce D. Parrello, Victoria Parrello, Jacob s Porter, Gordon D. Pusch, Maulik Shukla
, Indresh Singh, Lucy Stewart, Gene Tan, Chris Thomas, Margo VanOeffelen, Veronika Vonstein, Zachary S. Wallace
, Andrew S. Warren
, Alice R. Wattam, Fangfang Xia
, Hyun Seung Yoo
, Yun Zhang, Christian M. Zmasek, Richard H. Scheuermann
, Rick L. Stevens
:
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR. Nucleic Acids Res. 51(D1): 678-689 (2023) - Steven J. Franke
, Tamara Gerber
, Craig Warren
, Daniela Jansen
, Olaf Eisen
, Dorthe Dahl-Jensen
:
Investigating the Radar Response of Englacial Debris Entrained Basal Ice Units in East Antarctica Using Electromagnetic Forward Modeling. IEEE Trans. Geosci. Remote. Sens. 61: 1-16 (2023) - Jing-Ru C. Cheng
, Corwin Stanford, Steven R. Glandon, Anthony L. Lam, Warren R. Williams:
Macro benchmarking edge devices using enhanced super-resolution generative adversarial networks (ESRGANs). J. Supercomput. 79(5): 5360-5373 (2023) - William M. Jones, Craig G. Walker, Vivian E. Hafener, Warren D. Graham, Nathan DeBardeleben, Steven T. Senator:
Incorporating Staggered Planned Maintenance Reservations to Improve Performance in Computational Clusters. CLUSTER Workshops 2023: 32-36 - Kevin Maik Jablonka, Qianxiang Ai, Alexander Al-Feghali, Shruti Badhwar
, Joshua D. Bocarsly, Andres M. Bran, Stefan Bringuier, L. Catherine Brinson, Kamal Choudhary, Defne Circi, Sam Cox, Wibe A. de Jong, Matthew L. Evans, Nicolas Gastellu, Jerome Genzling, María Victoria Gil, Ankur K. Gupta, Zhi Hong, Alishba Imran, Sabine Kruschwitz, Anne Labarre, Jakub Lála, Tao Liu, Steven Ma, Sauradeep Majumdar
, Garrett W. Merz, Nicolas Moitessier, Elias Moubarak, Beatriz Mouriño, Brenden Pelkie, Michael Pieler, Mayk Caldas Ramos, Bojana Rankovic, Samuel G. Rodriques, Jacob N. Sanders, Philippe Schwaller, Marcus Schwarting, Jiale Shi, Berend Smit, Ben E. Smith, Joren Van Heck, Christoph Völker, Logan T. Ward, Sean Warren, Benjamin Weiser
, Sylvester Zhang, Xiaoqi Zhang, Ghezal Ahmad Zia, Aristana Scourtas, K. J. Schmidt, Ian T. Foster, Andrew D. White, Ben Blaiszik:
14 Examples of How LLMs Can Transform Materials Science and Chemistry: A Reflection on a Large Language Model Hackathon. CoRR abs/2306.06283 (2023) - Warren R. Williams, Ross Glandon, Luke L. Morris, Jing-Ru C. Cheng:
Benchmarking Performance of Deep Learning Model for Material Segmentation on Two HPC Systems. CoRR abs/2307.14921 (2023) - 2022
- Sophie Stevens, Audie Warren
:
On Sum Sets and Convex Functions. Electron. J. Comb. 29(2) (2022) - Lennert Verboven
, Toon Calders, Steven Callens, John Black, Gary Maartens
, Kelly E. Dooley, Samantha Potgieter, Robin M. Warren, Kris Laukens
, Annelies Van Rie:
A treatment recommender clinical decision support system for personalized medicine: method development and proof-of-concept for drug resistant tuberculosis. BMC Medical Informatics Decis. Mak. 22(1): 56 (2022) - Philip Patrick Allport
, Seddik Benhammadi
, Robert Ross Bosley, Jens Dopke
, Lucian Fasselt
, Samuel Flynn
, Laura Gonella
, Nicola Guerrini, Cigdem Issever, Kostas Nikolopoulos, Ioannis Kopsalis
, Peter Philips, Tony Price, Iain Sedgwick
, Giulio Villani, Matt Warren, Nigel Watson, Hannsjorg Weber
, Alasdair Winter
, Fergus Wilson
, Steven Worm, Zhige Zhang
:
DECAL: A Reconfigurable Monolithic Active Pixel Sensor for Tracking and Calorimetry in a 180 nm Image Sensor Process. Sensors 22(18): 6848 (2022) - 2021
- Margo VanOeffelen, Marcus Nguyen, Derya Aytan-Aktug
, Thomas S. Brettin, Emily M. Dietrich, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Robert Olson, Gordon D. Pusch, Maulik Shukla
, Rick Stevens
, Veronika Vonstein, Andrew S. Warren
, Alice R. Wattam, Hyun Seung Yoo
, James J. Davis
:
A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes. Briefings Bioinform. 22(6) (2021) - Steve Borkman, Adam Crespi, Saurav Dhakad, Sujoy Ganguly, Jonathan Hogins, You-Cyuan Jhang, Mohsen Kamalzadeh, Bowen Li, Steven Leal, Pete Parisi, Cesar Romero, Wesley Smith, Alex Thaman, Samuel Warren, Nupur Yadav:
Unity Perception: Generate Synthetic Data for Computer Vision. CoRR abs/2107.04259 (2021) - 2020
- James J. Davis, Alice R. Wattam, Ramy K. Aziz, Thomas S. Brettin, Ralph Butler, Rory Butler
, Philippe Chlenski
, Neal Conrad, Allan Dickerman, Emily M. Dietrich, Joseph L. Gabbard
, Svetlana Gerdes
, Andrew Guard, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Daniel E. Murphy-Olson, Marcus Nguyen, Eric K. Nordberg, Gary J. Olsen, Robert Olson, Jamie C. Overbeek, Ross A. Overbeek, Bruce D. Parrello, Gordon D. Pusch, Maulik Shukla
, Chris Thomas, Margo VanOeffelen, Veronika Vonstein, Andrew S. Warren
, Fangfang Xia, Dawen Xie, Hyun Seung Yoo
, Rick Stevens:
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities. Nucleic Acids Res. 48(Database-Issue): D606-D612 (2020) - 2019
- Dionysios A. Antonopoulos, Rida Assaf, Ramy Karam Aziz, Thomas S. Brettin, Christopher Bun, Neal Conrad, James J. Davis, Emily M. Dietrich, Terry Disz, Svetlana Gerdes, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Daniel E. Murphy-Olson, Eric K. Nordberg, Gary J. Olsen, Robert Olson, Ross A. Overbeek, Bruce D. Parrello, Gordon D. Pusch, John Santerre, Maulik Shukla
, Rick L. Stevens, Margo VanOeffelen, Veronika Vonstein, Andrew S. Warren
, Alice R. Wattam, Fangfang Xia, Hyun Seung Yoo:
PATRIC as a unique resource for studying antimicrobial resistance. Briefings Bioinform. 20(4): 1094-1102 (2019) - René L. Warren
, Lauren Coombe
, Hamid Mohamadi, Jessica Zhang, Barry Jaquish, Nathalie Isabel, Steven J. M. Jones
, Jean Bousquet, Jörg Bohlmann, Inanç Birol:
ntEdit: scalable genome sequence polishing. Bioinform. 35(21): 4430-4432 (2019) - Alan Priester
, Holden H. Wu
, Pooria Khoshnoodi
, Douglas Schneider
, Zhaohuan Zhang, Nazanin H. Asvadi, Anthony Sisk, Steven S. Raman, Robert E. Reiter, Warren S. Grundfest, Leonard S. Marks, Shyam Natarajan:
Registration Accuracy of Patient-Specific, Three-Dimensional-Printed Prostate Molds for Correlating Pathology With Magnetic Resonance Imaging. IEEE Trans. Biomed. Eng. 66(1): 14-22 (2019) - Michele Gubian, Jonathan Harrington, Mary Stevens, Florian Schiel, Paul Warren
:
Tracking the New Zealand English NEAR/SQUARE Merger Using Functional Principal Components Analysis. INTERSPEECH 2019: 296-300 - Sudheer Chunduri
, Taylor L. Groves
, Peter Mendygral, Brian Austin, Jacob Balma
, Krishna Kandalla, Kalyan Kumaran, Glenn K. Lockwood
, Scott Parker, Steven Warren, Nathan Wichmann, Nicholas J. Wright
:
GPCNeT: designing a benchmark suite for inducing and measuring contention in HPC networks. SC 2019: 42:1-42:33 - 2018
- Mercedes Argüello Casteleiro, George Demetriou, Warren J. Read
, Maria Jesus Fernandez Prieto, Nava Maroto, Diego Maseda-Fernandez, Goran Nenadic, Julie Klein
, John A. Keane, Robert Stevens:
Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature. J. Biomed. Semant. 9(1): 13:1-13:24 (2018) - Shaun D. Jackman
, Lauren Coombe
, Justin Chu, René L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Jörg Bohlmann, Steven J. M. Jones
, Inanç Birol:
Tigmint: correcting assembly errors using linked reads from large molecules. BMC Bioinform. 19(1): 393:1-393:10 (2018) - 2017
- Alice R. Wattam, James J. Davis, Rida Assaf, Sébastien Boisvert, Thomas S. Brettin, Christopher Bun, Neal Conrad, Emily M. Dietrich, Terry Disz, Joseph L. Gabbard
, Svetlana Gerdes, Christopher S. Henry, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Eric K. Nordberg, Gary J. Olsen, Daniel E. Murphy-Olson, Robert Olson, Ross A. Overbeek, Bruce D. Parrello, Gordon D. Pusch, Maulik Shukla
, Veronika Vonstein, Andrew S. Warren
, Fangfang Xia, Hyun Seung Yoo, Rick L. Stevens:
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center. Nucleic Acids Res. 45(Database-Issue): D535-D542 (2017) - 2016
- Warren J. Read
, George Demetriou, Goran Nenadic, Noel Ruddock, Robert Stevens, Jerry Winter:
The BioHub Knowledge Base: Ontology and Repository for Sustainable Biosourcing. J. Biomed. Semant. 7: 30 (2016) - Hesha J. Duggirala, Joseph M. Tonning
, Ella Smith, Roselie A. Bright, John D. Baker, Robert Ball, Carlos Bell, Susan J. Bright-Ponte, Taxiarchis Botsis, Khaled Bouri, Marc Boyer, Keith Burkhart, G. Steven Condrey, James J. Chen, Stuart Chirtel, Ross W. Filice, Henry Francis, Hongying Jiang
, Jonathan Levine, David Martin, Taiye Oladipo, Rene O'Neill, Lee Anne M. Palmer, Antonio Paredes, George Rochester, Deborah Sholtes, Ana Szarfman
, Hui-Lee Wong, Zhiheng Xu, Taha A. Kass-Hout
:
Use of data mining at the Food and Drug Administration. J. Am. Medical Informatics Assoc. 23(2): 428-434 (2016) - Daniela I. Moody, Michael S. Warren, Samuel W. Skillman, Rick Chartrand, Steven P. Brumby, Ryan Keisler, Tim Kelton, Mark Mathis:
Building a living atlas of the Earth in the cloud. ACSSC 2016: 1273-1277 - Sriram Sundaram, Warren He, Sriram Sambamurthy, Aaron Grenat, Steven Liepe, Samuel Naffziger:
Unified Power Frequency Model Framework. ISLPED 2016: 174-179 - Mercedes Argüello Casteleiro, George Demetriou, Warren J. Read, Maria Jesus Fernandez Prieto, Diego Maseda-Fernandez, Goran Nenadic, Julie Klein, John A. Keane, Robert Stevens:
Deep Learning meets Semantic Web: A feasibility study with the Cardiovascular Disease Ontology and PubMed citations. ODLS 2016: 1-6 - Daniela I. Moody, Dana E. Bauer, Steven P. Brumby, Eric D. Chisolm, Michael S. Warren, Samuel W. Skillman, Ryan Keisler:
Land cover classification in fused multisensor multispectral satellite imagery. SSIAI 2016: 85-88 - Mercedes Argüello Casteleiro, Maria Jesus Fernandez Prieto, George Demetriou, Nava Maroto, Warren J. Read, Diego Maseda-Fernandez, Jose Julio Des Diz, Goran Nenadic, John A. Keane, Robert Stevens:
Ontology Learning with Deep Learning: a Case Study on Patient Safety Using PubMed. SWAT4LS 2016 - 2015
- Brian P. Kelley, Scott P. Brown, Gregory L. Warren, Steven W. Muchmore:
POSIT: Flexible Shape-Guided Docking For Pose Prediction. J. Chem. Inf. Model. 55(8): 1771-1780 (2015) - Mark G. Aartsen, Rasha U. Abbasi, Markus Ackermann
, Jenni Adams, Juan Antonio Aguilar Sánchez
, Markus Ahlers
, David Altmann, Carlos A. Argüelles Delgado
, Jan Auffenberg, Xinhua Bai, Michael F. Baker, Steven W. Barwick, Volker Baum, Ryan Bay, James J. Beatty
, Julia K. Becker Tjus
, Karl-Heinz Becker, Segev BenZvi
, Patrick Berghaus, David Berley, Elisa Bernardini
, Anna Bernhard, David Z. Besson, G. Binder, Daniel Bindig, Martin Bissok, Erik Blaufuss, Jan Blumenthal, David J. Boersma, Christian Bohm, Debanjan Bose, Sebastian Böser, Olga Botner, Lionel Brayeur, Hans-Peter Bretz, Anthony M. Brown, Ronald Bruijn, James Casey, Martin Casier, Dmitry Chirkin, Asen Christov
, Brian John Christy, Ken Clark, Lew Classen, Fabian Clevermann, Stefan Coenders, Shirit Cohen, Doug F. Cowen, Angel H. Cruz Silva, Matthias Danninger
, Jacob Daughhetee, James C. Davis, Melanie Day, Catherine De Clercq
, Sam De Ridder, Paolo Desiati
, Krijn D. de Vries
, Meike de With, Tyce DeYoung
, Juan Carlos Díaz-Vélez
, Matthew Dunkman, Ryan Eagan, Benjamin Eberhardt, Björn Eichmann, Jonathan Eisch, Sebastian Euler, Paul A. Evenson, Oladipo O. Fadiran, Ali R. Fazely, Anatoli Fedynitch, Jacob Feintzeig, Tom Feusels, Kirill Filimonov, Chad Finley, Tobias Fischer-Wasels, Samuel Flis, Anna Franckowiak, Katharina Frantzen, Tomasz Fuchs, Thomas K. Gaisser, Joseph S. Gallagher, Lisa Marie Gerhardt, Laura E. Gladstone, Thorsten Glüsenkamp, Azriel Goldschmidt, Geraldina Golup, Javier G. González, Jordan A. Goodman
, Dariusz Góra
, Dylan T. Grandmont, Darren Grant, Pavel Gretskov, John C. Groh
, Andreas Groß, Chang Hyon Ha, Abd Al Karim Haj Ismail
, Patrick Hallen, Allan Hallgren, Francis Halzen, Kael D. Hanson, Dustin Hebecker, David Heereman, Dirk Heinen
, Klaus Helbing
, Robert Eugene Hellauer III, Stephanie Virginia Hickford, Gary C. Hill
, Kara D. Hoffman, Ruth Hoffmann, Andreas Homeier, Kotoyo Hoshina, Feifei Huang, Warren Huelsnitz, Per Olof Hulth, Klas Hultqvist, Shahid Hussain, Aya Ishihara, Emanuel Jacobi, John E. Jacobsen, Kai Jagielski, George S. Japaridze, Kyle Jero, Ola Jlelati, Basho Kaminsky, Alexander Kappes, Timo Karg
, Albrecht Karle, Matthew Kauer, John Lawrence Kelley, Joanna Kiryluk, J. Kläs, Spencer R. Klein
, Jan-Hendrik Köhne, Georges Kohnen, Hermann Kolanoski
, Lutz Köpke, Claudio Kopper, Sandro Kopper, D. Jason Koskinen, Marek Kowalski
, Mark Krasberg, Anna Kriesten, Kai Michael Krings, Gösta Kroll, Jan Kunnen, Naoko Kurahashi, Takao Kuwabara, Mathieu L. M. Labare, Hagar Landsman, Michael James Larson, Mariola Lesiak-Bzdak, Martin Leuermann, Julia Leute, Jan Lünemann, Oscar A. Macías-Ramírez, James Madsen, Giuliano Maggi, Reina Maruyama
, Keiichi Mase, Howard S. Matis, Frank McNally, Kevin James Meagher, Martin Merck, Gonzalo Merino Arévalo
, Thomas Meures, Sandra Miarecki, Eike Middell, Natalie Milke, John Lester Miller, Lars Mohrmann
, Teresa Montaruli
, Robert M. Morse, Rolf Nahnhauer, Uwe Naumann, Hans Niederhausen, Sarah C. Nowicki, David R. Nygren, Anna Obertacke
, Sirin Odrowski, Alex Olivas, Ahmad Omairat, Aongus Starbuck Ó Murchadha, Larissa Paul, Joshua A. Pepper, Carlos Pérez de los Heros, Carl Pfendner, Damian Pieloth, Elisa Pinat, Jonas Posselt, P. Buford Price, Gerald T. Przybylski, Melissa Quinnan, Leif Rädel, Ian Rae
, Mohamed Rameez, Katherine Rawlins, Peter Christian Redl, René Reimann
, Elisa Resconi
, Wolfgang Rhode
, Mathieu Ribordy, Michael Richman, Benedikt Riedel, J. P. Rodrigues, Carsten Rott
, Tim Ruhe, Bakhtiyar Ruzybayev, Dirk Ryckbosch, Sabine M. Saba, Heinz-Georg Sander, Juan Marcos Santander
, Subir Sarkar
, Kai Schatto, Florian Scheriau, Torsten Schmidt, Martin Schmitz, Sebastian Schoenen, Sebastian Schöneberg, Arne Schönwald, Anne Schukraft
, Lukas Schulte, David Schultz, Olaf Schulz, David Seckel, Yolanda Sestayo de la Cerra, Surujhdeo Seunarine, Rezo Shanidze, Chris Sheremata, Miles W. E. Smith, Dennis Soldin, Glenn M. Spiczak, Christian Spiering, Michael Stamatikos, Todor Stanev, Nick A. Stanisha, Alexander Stasik, Thorsten Stezelberger, Robert G. Stokstad, Achim Stößl, Erik A. Strahler, Rickard Ström
, Nora Linn Strotjohann, Gregory W. Sullivan, Henric Taavola
, Ignacio J. Taboada
, Alessio Tamburro, Andreas Tepe, Samvel Ter-Antonyan
, Gordana Tesic, Serap Tilav, Patrick A. Toale, Moriah Natasha Tobin, Simona Toscano
, Maria Tselengidou, Elisabeth Unger, Marcel Usner, Sofia Vallecorsa
, Nick van Eijndhoven, Arne Van Overloop, Jakob van Santen, Markus Vehring, Markus Voge, Matthias Vraeghe, Christian Walck, Tilo Waldenmaier, Marius Wallraff, Christopher N. Weaver, Mark T. Wellons, Christopher H. Wendt, Stefan Westerhoff, Nathan Whitehorn, Klaus Wiebe, Christopher Wiebusch
, Dawn R. Williams, Henrike Wissing, Martin Wolf, Terri R. Wood, Kurt Woschnagg, Donglian Xu, Xianwu Xu, Juan Pablo Yáñez Garza, Gaurang B. Yodh, Shigeru Yoshida
, Pavel Zarzhitsky, Jan Ziemann, Simon Zierke, Marcel Zoll:
The IceProd framework: Distributed data processing for the IceCube neutrino observatory. J. Parallel Distributed Comput. 75: 198-211 (2015) - Michael S. Warren, Steven P. Brumby, Samuel W. Skillman, Tim Kelton, Brendt Wohlberg, Mark Mathis, Rick Chartrand, Ryan Keisler, Mark Johnson:
Seeing the Earth in the Cloud: Processing one petabyte of satellite imagery in one day. AIPR 2015: 1-12
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