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Trevor Lithgow
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2020 – today
- 2021
- [j15]Ruopeng Xie
, Jiahui Li
, Jiawei Wang
, Wei Dai, André Leier, Tatiana T. Marquez-Lago, Tatsuya Akutsu, Trevor Lithgow, Jiangning Song
, Yanju Zhang
:
DeepVF: a deep learning-based hybrid framework for identifying virulence factors using the stacking strategy. Briefings Bioinform. 22(3) (2021) - [j14]Le Huang
, Bowen Yang, Haidong Yi, Amina Asif
, Jiawei Wang
, Trevor Lithgow
, Han Zhang
, Fayyaz ul Amir Afsar Minhas
, Yanbin Yin
:
AcrDB: a database of anti-CRISPR operons in prokaryotes and viruses. Nucleic Acids Res. 49(Database-Issue): D622-D629 (2021) - [j13]Jiawei Wang
, Wei Dai, Jiahui Li
, Qi Li, Ruopeng Xie
, Yanju Zhang
, Christopher Stubenrauch
, Trevor Lithgow
:
AcrHub: an integrative hub for investigating, predicting and mapping anti-CRISPR proteins. Nucleic Acids Res. 49(Database-Issue): D630-D638 (2021) - [j12]Jiawei Wang
, Jiahui Li
, Yi Hou, Wei Dai, Ruopeng Xie
, Tatiana T. Marquez-Lago, André Leier, Tieli Zhou, Von Torres
, Iain Hay
, Christopher Stubenrauch
, Yanju Zhang
, Jiangning Song
, Trevor Lithgow
:
BastionHub: a universal platform for integrating and analyzing substrates secreted by Gram-negative bacteria. Nucleic Acids Res. 49(Database-Issue): D651-D659 (2021) - 2020
- [j11]Yanju Zhang, Sha Yu, Ruopeng Xie
, Jiahui Li
, André Leier
, Tatiana T. Marquez-Lago, Tatsuya Akutsu
, Alexander Ian Smith, Zongyuan Ge
, Jiawei Wang
, Trevor Lithgow, Jiangning Song
:
PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins. Bioinform. 36(3): 704-712 (2020) - [j10]Jiawei Wang
, Wei Dai, Jiahui Li
, Ruopeng Xie
, Rhys A. Dunstan
, Christopher Stubenrauch
, Yanju Zhang
, Trevor Lithgow
:
PaCRISPR: a server for predicting and visualizing anti-CRISPR proteins. Nucleic Acids Res. 48(Webserver-Issue): W348-W357 (2020)
2010 – 2019
- 2019
- [j9]Jiawei Wang
, Bingjiao Yang, Yi An, Tatiana T. Marquez-Lago, André Leier
, Jonathan Wilksch, Qingyang Hong, Yang Zhang, Morihiro Hayashida, Tatsuya Akutsu
, Geoffrey I. Webb
, Richard A. Strugnell
, Jiangning Song
, Trevor Lithgow
:
Systematic analysis and prediction of type IV secreted effector proteins by machine learning approaches. Briefings Bioinform. 20(3): 931-951 (2019) - [j8]Fuyi Li
, Yanan Wang, Chen Li
, Tatiana T. Marquez-Lago, André Leier
, Neil D. Rawlings
, Gholamreza Haffari, Jerico Nico De Leon Revote, Tatsuya Akutsu
, Kuo-Chen Chou, Anthony W. Purcell
, Robert N. Pike, Geoffrey I. Webb
, Alexander Ian Smith
, Trevor Lithgow, Roger J. Daly
, James C. Whisstock, Jiangning Song
:
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods. Briefings Bioinform. 20(6): 2150-2166 (2019) - [j7]Jiawei Wang
, Jiahui Li
, Bingjiao Yang, Ruopeng Xie
, Tatiana T. Marquez-Lago, André Leier
, Morihiro Hayashida, Tatsuya Akutsu
, Yanju Zhang, Kuo-Chen Chou, Joel Selkrig
, Tieli Zhou, Jiangning Song
, Trevor Lithgow:
Bastion3: a two-layer ensemble predictor of type III secreted effectors. Bioinform. 35(12): 2017-2028 (2019) - [j6]Fuyi Li
, Yang Zhang, Anthony W. Purcell
, Geoffrey I. Webb
, Kuo-Chen Chou, Trevor Lithgow, Chen Li
, Jiangning Song
:
Positive-unlabelled learning of glycosylation sites in the human proteome. BMC Bioinform. 20(1): 112:1-112:17 (2019) - 2018
- [j5]Yi An, Jiawei Wang
, Chen Li
, André Leier, Tatiana T. Marquez-Lago, Jonathan Wilksch, Yang Zhang, Geoffrey I. Webb
, Jiangning Song
, Trevor Lithgow
:
Comprehensive assessment and performance improvement of effector protein predictors for bacterial secretion systems III, IV and VI. Briefings Bioinform. 19(1): 148-161 (2018) - [j4]Jiawei Wang
, Bingjiao Yang, André Leier
, Tatiana T. Marquez-Lago, Morihiro Hayashida, Andrea Rocker, Yanju Zhang, Tatsuya Akutsu
, Kuo-Chen Chou, Richard A. Strugnell
, Jiangning Song
, Trevor Lithgow
:
Bastion6: a bioinformatics approach for accurate prediction of type VI secreted effectors. Bioinform. 34(15): 2546-2555 (2018) - [j3]Fuyi Li
, Chen Li
, Tatiana T. Marquez-Lago, André Leier
, Tatsuya Akutsu
, Anthony W. Purcell
, Alexander Ian Smith
, Trevor Lithgow
, Roger J. Daly
, Jiangning Song
, Kuo-Chen Chou:
Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome. Bioinform. 34(24): 4223-4231 (2018) - 2017
- [j2]Jiawei Wang
, Bingjiao Yang, Jerico Nico De Leon Revote, André Leier
, Tatiana T. Marquez-Lago, Geoffrey I. Webb
, Jiangning Song
, Kuo-Chen Chou, Trevor Lithgow
:
POSSUM: a bioinformatics toolkit for generating numerical sequence feature descriptors based on PSSM profiles. Bioinform. 33(17): 2756-2758 (2017) - 2010
- [j1]Vladimir A. Likic, Malcolm J. McConville, Trevor Lithgow
, Antony Bacic
:
Systems Biology: The Next Frontier for Bioinformatics. Adv. Bioinformatics 2010: 268925:1-268925:10 (2010)
Coauthor Index

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