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ORCIDMajid Rastegar-Mojarad
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Journal Articles
- 2020
[j16]Yanshan Wang
, Naveed Afzal, Sunyang Fu, Liwei Wang, Feichen Shen, Majid Rastegar-Mojarad, Hongfang Liu:
MedSTS: a resource for clinical semantic textual similarity. Lang. Resour. Evaluation 54(1): 57-72 (2020)- 2019
- [j15]Sumit Madan, Justyna Szostak, Ravikumar Komandur Elayavilli, Richard Tzong-Han Tsai, Mehdi Ali, Longhua Qian, Majid Rastegar-Mojarad, Julia Hoeng, Juliane Fluck:
The extraction of complex relationships and their conversion to biological expression language (BEL) overview of the BioCreative VI (2017) BEL track. Database J. Biol. Databases Curation 2019: baz084 (2019) - [j14]Feichen Shen, Yiqing Zhao, Liwei Wang, Majid Rastegar-Mojarad, Yanshan Wang, Sijia Liu, Hongfang Liu:
Rare disease knowledge enrichment through a data-driven approach. BMC Medical Informatics Decis. Mak. 19(1): 32:1-32:11 (2019) - [j13]Liwei Wang, Yanshan Wang, Feichen Shen, Majid Rastegar-Mojarad, Hongfang Liu:
Discovering associations between problem list and practice setting. BMC Medical Informatics Decis. Mak. 19-S(3): 13-22 (2019) - 2018
- [j12]Sijia Liu, Feichen Shen, Ravikumar Komandur Elayavilli, Yanshan Wang, Majid Rastegar-Mojarad, Vipin Chaudhary, Hongfang Liu:
Extracting chemical-protein relations using attention-based neural networks. Database J. Biol. Databases Curation 2018: bay102 (2018) - [j11]Yanshan Wang, Liwei Wang, Majid Rastegar-Mojarad, Sungrim Moon, Feichen Shen, Naveed Afzal, Sijia Liu, Yuqun Zeng, Saeed Mehrabi, Sunghwan Sohn, Hongfang Liu:
Clinical information extraction applications: A literature review. J. Biomed. Informatics 77: 34-49 (2018) - [j10]Yanshan Wang, Sijia Liu, Naveed Afzal, Majid Rastegar-Mojarad, Liwei Wang, Feichen Shen, Paul R. Kingsbury, Hongfang Liu:
A comparison of word embeddings for the biomedical natural language processing. J. Biomed. Informatics 87: 12-20 (2018) - 2017
- [j9]K. E. Ravikumar, Majid Rastegar-Mojarad, Hongfang Liu:
BELMiner: adapting a rule-based relation extraction system to extract biological expression language statements from bio-medical literature evidence sentences. Database J. Biol. Databases Curation 2017: baw156 (2017) - [j8]Yanshan Wang, Majid Rastegar-Mojarad, Ravikumar Komandur Elayavilli, Hongfang Liu:
Leveraging word embeddings and medical entity extraction for biomedical dataset retrieval using unstructured texts. Database J. Biol. Databases Curation 2017: bax091 (2017) - [j7]Majid Rastegar-Mojarad, Sunghwan Sohn, Liwei Wang, Feichen Shen, Troy C. Bleeker, William A. Cliby, Hongfang Liu:
Need of informatics in designing interoperable clinical registries. Int. J. Medical Informatics 108: 78-84 (2017) - 2016
- [j6]Juliane Fluck, Sumit Madan, Sam Ansari, Alpha Tom Kodamullil, Reagon Karki, Majid Rastegar-Mojarad, Natalie L. Catlett, William Hayes, Justyna Szostak, Julia Hoeng, Manuel C. Peitsch:
Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL). Database J. Biol. Databases Curation 2016 (2016) - [j5]Soheil Moosavinasab, Jeremy Patterson, Robert Strouse, Majid Rastegar-Mojarad, Kelly Regan, Philip R. O. Payne, Yungui Huang, Simon M. Lin:
'RE: fine drugs': an interactive dashboard to access drug repurposing opportunities. Database J. Biol. Databases Curation 2016 (2016) - [j4]Majid Rastegar-Mojarad, Ravikumar Komandur Elayavilli, Hongfang Liu:
BELTracker: evidence sentence retrieval for BEL statements. Database J. Biol. Databases Curation 2016 (2016) - 2015
- [j3]Scott J. Hebbring, Majid Rastegar-Mojarad, Zhan Ye, John Mayer, Crystal Jacobson, Simon M. Lin:
Application of clinical text data for phenome-wide association studies (PheWASs). Bioinform. 31(12): 1981-1987 (2015) - [j2]Serkan Ayvaz, John R. Horn, Oktie Hassanzadeh, Qian Zhu, Johann Stan, Nicholas P. Tatonetti, Santiago Vilar, Mathias Brochhausen, Matthias Samwald, Majid Rastegar-Mojarad, Michel Dumontier, Richard D. Boyce:
Toward a complete dataset of drug-drug interaction information from publicly available sources. J. Biomed. Informatics 55: 206-217 (2015) - 2013
- [j1]Richard D. Boyce, John R. Horn, Oktie Hassanzadeh, Anita de Waard, Jodi Schneider, Joanne S. Luciano, Majid Rastegar-Mojarad, Maria Liakata:
Dynamic enhancement of drug product labels to support drug safety, efficacy, and effectiveness. J. Biomed. Semant. 4: 5 (2013)
Conference and Workshop Papers
- 2018
- [c30]Na Hong, Andrew Wen, Majid Rastegar-Mojarad, Sunghwan Sohn, Hongfang Liu, Guoqian Jiang:
Standardizing Heterogeneous Annotation Corpora Using HL7 FHIR for Facilitating their Reuse and Integration in Clinical NLP. AMIA 2018 - [c29]Majid Rastegar-Mojarad, Sijia Liu, Yanshan Wang, Naveed Afzal, Liwei Wang, Feichen Shen, Sunyang Fu, Hongfang Liu:
BioCreative/OHNLP Challenge 2018. BCB 2018: 575 - [c28]Liwei Wang, Majid Rastegar-Mojarad, Ravikumar Komandur Elayavilli, Yanshan Wang, Hongfang Liu:
Identification of Genetic Causality Statements in Medline Abstracts Leveraging Distant Supervision. ICHI Workshops 2018: 1-8 - [c27]Liwei Wang, Yanshan Wang, Feichen Shen, Majid Rastegar-Mojarad, Hongfang Liu:
Predicting Practice Setting Using Topic Modeling. ICHI Workshops 2018: 62-63 - 2017
- [c26]Yuqun Zeng, Yanshan Wang, Feichen Shen, Sijia Liu, Liwei Wang, Majid Rastegar-Mojarad, Xusheng Liu, Hongfang Liu:
Recommending education materials for diabetic questions using information retrieval approaches. AMIA 2017 - [c25]Yanshan Wang, Sijia Liu, Majid Rastegar-Mojarad, Liwei Wang, Feichen Shen, Fei Liu, Hongfang Liu:
Dependency and AMR Embeddings for Drug-Drug Interaction Extraction from Biomedical Literature. BCB 2017: 36-43 - [c24]Feichen Shen, Sunghwan Sohn, Majid Rastegar-Mojarad, Sijia Liu, Joshua J. Pankratz, Michael Hatton, Nancy Sowada, Om Shrestha, Shawna Shurson, Hongfang Liu:
Populating Physician Biographical Pages Based on EMR Data. CRI 2017 - [c23]Yanshan Wang, Liwei Wang, Majid Rastegar-Mojarad, Sijia Liu, Feichen Shen, Hongfang Liu:
Content Analysis of Free-Text Family History. CRI 2017 - [c22]Majid Rastegar-Mojarad, Jenna K. Lovely, Joshua J. Pankratz, Sunghwan Sohn, Donna M. Ihrke, Amit Merchea, David W. Larson, Hongfang Liu:
Using Unstructured Data to Identify Readmitted Patients. ICHI 2017: 1-4 - [c21]Yanshan Wang, Ravikumar Komandur Elayavilli, Majid Rastegar-Mojarad, Hongfang Liu:
Leveraging both Structured and Unstructured Data for Precision Information Retrieval. TREC 2017 - 2016
- [c20]Dingcheng Li, Sijia Liu, Majid Rastegar-Mojarad, Yanshan Wang, Xiaodi Li, Vipin Chaudhary, Terry M. Therneau, Hongfang Liu:
A Topic-modeling Based Framework for Drug-drug Interaction Classification from Biomedical Text. AMIA 2016 - [c19]Dingcheng Li, Sijia Liu, Majid Rastegar-Mojarad, Yanshan Wang, Xiaodi Li, Vipin Chaudhary, Terry M. Therneau, Hongfang Liu:
Drug-drug Interaction Detection with A Topic-modeling Based Framework Augmented with Distant-supervision. AMIA 2016 - [c18]Liwei Wang, Dingcheng Li, Majid Rastegar-Mojarad, Hongfang Liu:
Discovering Associations between Problem List and Practice Setting. AMIA 2016 - [c17]Majid Rastegar-Mojarad, Ravikumar Komandur Elayavilli, Liwei Wang, Rashmi Prasad, Hongfang Liu:
Prioritizing Adverse Drug Reaction and Drug Repositioning Candidates Generated by Literature-Based Discovery. BCB 2016: 289-296 - [c16]Ravikumar Komandur Elayavilli, Majid Rastegar-Mojarad, Hongfang Liu:
MutD - A PubMed Scale Resource for Protein Mutation-Disease Relations through Bio-Medical Literature Mining. ICBO/BioCreative 2016 - [c15]Yanshan Wang, Majid Rastegar-Mojarad, Ravikumar Komandur Elayavilli, Sijia Liu, Hongfang Liu:
An Ensemble Model of Clinical Information Extraction and Information Retrieval for Clinical Decision Support. TREC 2016 - 2015
- [c14]Majid Rastegar-Mojarad, Hongfang Liu, Priya Nambisan:
Social Media use for Drug Repurposing: Understanding the consumer perspective. AMIA 2015 - [c13]Sunghwan Sohn, Majid Rastegar-Mojarad, James M. Naessens, Elizabeth B. Habermann, David W. Larson, Hongfang Liu:
Detection of Colorectal Surgical Site Infections Using Bayesian Network and Natural Language Processing. AMIA 2015 - [c12]Sunghwan Sohn, Majid Rastegar-Mojarad, James M. Naessens, Elizabeth B. Habermann, David W. Larson, Hongfang Liu:
Prediction of Colorectal Surgical Site Infections Using Risk Factors. AMIA 2015 - [c11]Dingcheng Li, Majid Rastegar-Mojarad, Ravikumar Komandur Elayavilli, Yanshan Wang, Saeed Mehrabi, Yue Yu, Sunghwan Sohn, Yanpeng Li, Naveed Afzal, Hongfang Liu:
A frequency-filtering strategy of obtaining PHI-free sentences from clinical data repository. BCB 2015: 315-324 - [c10]Majid Rastegar-Mojarad, Ravikumar Komandur Elayavilli, Dingcheng Li, Rashmi Prasad, Hongfang Liu:
A new method for prioritizing drug repositioning candidates extracted by literature-based discovery. BIBM 2015: 669-674 - [c9]Majid Rastegar-Mojarad, Rashmi Prasad:
Toward a Complete Database of Drug Repurposing Candidates Extracted from Social Media, Biomedical Literature, and Genetic Data. ICHI 2015: 494 - [c8]Yanshan Wang, Saeed Mehrabi, Majid Rastegar-Mojarad, Dingcheng Li, Hongfang Liu:
Retrieval of Semantically Similar Healthcare Questions in Healthcare Forums. ICHI 2015: 517-518 - [c7]Majid Rastegar-Mojarad, Ravikumar Komandur Elayavilli, Dingcheng Li, Hongfang Liu:
Assessing the Need of Discourse-Level Analysis in Identifying Evidence of Drug-Disease Relations in Scientific Literature. MedInfo 2015: 539-543 - [c6]Dingcheng Li, Majid Rastegar-Mojarad, Yanpeng Li, Sunghwan Sohn, Saeed Mehrabi, Ravikumar Komandur Elayavilli, Yue Yu, Hongfang Liu:
A Frequency-based Strategy of Obtaining Sentences from Clinical Data Repository for Crowdsourcing. MedInfo 2015: 1033-1034 - 2014
- [c5]Amy Webb, Aaron Albin, Zhan Ye, Majid Rastegar-Mojarad, Kun Huang, Jeffrey D. Parvin, Wolfgang Sadee, Lang Li, Simon M. Lin, Yang Xiang:
Mining massive SNP data for identifying associated SNPs and uncovering gene relationships. BCB 2014: 304-313 - 2013
- [c4]Majid Rastegar-Mojarad, Brian Harrington, Steven M. Belknap:
Automatic detection of drug interaction mismatches in package inserts. ICACCI 2013: 373-377 - [c3]Majid Rastegar-Mojarad, Michael E. Bales, Hong Yu:
ResearcherMap: A Tool for Visualizing Author Locations Using Google Maps. MedInfo 2013: 1187 - [c2]Majid Rastegar-Mojarad, Richard D. Boyce, Rashmi Prasad:
UWM-TRIADS: Classifying Drug-Drug Interactions with Two-Stage SVM and Post-Processing. SemEval@NAACL-HLT 2013: 667-674 - 2009
- [c1]Majid Rastegar-Mojarad, Behrouz Minaei-Bidgoli:
MRC: Multi Relational Clustering approach. DMIN 2009: 84-89
Informal and Other Publications
- 2018
- [i2]Yanshan Wang, Sijia Liu, Naveed Afzal, Majid Rastegar-Mojarad, Liwei Wang, Feichen Shen, Paul R. Kingsbury, Hongfang Liu:
A Comparison of Word Embeddings for the Biomedical Natural Language Processing. CoRR abs/1802.00400 (2018) - [i1]Yanshan Wang, Naveed Afzal, Sunyang Fu, Liwei Wang, Feichen Shen, Majid Rastegar-Mojarad, Hongfang Liu:
MedSTS: A Resource for Clinical Semantic Textual Similarity. CoRR abs/1808.09397 (2018)
Coauthor Index
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