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Daniel R. Zerbino
Person information
- affiliation: European Molecular Biology Laboratory, EMBL-EBI, Hinxton, UK
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2020 – today
- 2022
- [j24]Nishadi De Silva
, Jyothish Bhai
, Marc Chakiachvili
, Bruno Contreras-Moreira
, Carla A. Cummins, Adam Frankish
, Astrid Gall
, Thiago Augusto Lopes Genez, Kevin L. Howe
, Sarah E. Hunt
, Fergal J. Martin
, Benjamin Moore
, Denye N. Oheh, Anne Parker, Andrew Parton, Magali Ruffier
, Manoj Pandian Sakthivel, Dan Sheppard, John G. Tate, Anja Thormann, David Thybert, Stephen J. Trevanion
, Andrea Winterbottom
, Daniel R. Zerbino
, Robert D. Finn
, Paul Flicek
, Andrew D. Yates
:
The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data. Nucleic Acids Res. 50(D1): 765-770 (2022) - [j23]Fiona Cunningham
, James E. Allen, Jamie Allen
, Jorge Álvarez-Jarreta, M. Ridwan Amode, Irina M. Armean
, Olanrewaju Austine-Orimoloye, Andrey G. Azov
, If Barnes, Ruth Bennett
, Andrew E. Berry, Jyothish Bhai
, Alexandra Bignell, Konstantinos Billis
, Sanjay Boddu
, Lucy Brooks
, Mehrnaz Charkhchi, Carla A. Cummins
, Luca Da Rin Fioretto, Claire Davidson
, Kamalkumar Jayantilal Dodiya, Sarah M. Donaldson
, Bilal El Houdaigui
, Tamara El Naboulsi, Reham Fatima, Carlos García-Girón
, Thiago A. L. Genez, Jose Gonzalez Martinez
, Cristina Guijarro-Clarke
, Arthur Gymer, Matthew Hardy
, Zoe Hollis
, Thibaut Hourlier
, Toby Hunt
, Thomas Juettemann
, Vinay Kaikala, Mike P. Kay
, Ilias Lavidas
, Tuan Le, Diana Lemos
, José Carlos Marugán
, Shamika Mohanan
, Aleena Mushtaq, Marc Naven, Denye N. Oheh, Anne Parker, Andrew Parton, Malcolm Perry
, Ivana Pilizota
, Irina Prosovetskaia, Manoj Pandian Sakthivel, Ahamed Imran Abdul Salam, Bianca M. Schmitt
, Helen Schuilenburg
, Dan Sheppard, José G. Pérez-Silva
, William Stark
, Emily Steed
, Kyösti Sutinen, Ranjit Sukumaran, Dulika Sumathipala
, Marie-Marthe Suner
, Michal Szpak
, Anja Thormann, Francesca Floriana Tricomi
, David Urbina-Gómez
, Andres Veidenberg
, Thomas A. Walsh
, Brandon Walts
, Natalie L. Willhoft
, Andrea Winterbottom
, Elizabeth Wass
, Marc Chakiachvili
, Bethany Flint
, Adam Frankish
, Stefano Giorgetti, Leanne Haggerty
, Sarah E. Hunt
, Garth IIsley
, Jane E. Loveland
, Fergal J. Martin
, Benjamin Moore
, Jonathan M. Mudge
, Matthieu Muffato
, Emily Perry
, Magali Ruffier
, John G. Tate, David Thybert, Stephen J. Trevanion
, Sarah Dyer
, Peter W. Harrison
, Kevin L. Howe
, Andrew D. Yates
, Daniel R. Zerbino
, Paul Flicek
:
Ensembl 2022. Nucleic Acids Res. 50(D1): 988-995 (2022) - 2021
- [j22]Kevin L. Howe
, Premanand Achuthan, James E. Allen, Jamie Allen, Jorge Álvarez-Jarreta, M. Ridwan Amode, Irina M. Armean, Andrey G. Azov, Ruth Bennett, Jyothish Bhai, Konstantinos Billis, Sanjay Boddu, Mehrnaz Charkhchi, Carla A. Cummins, Luca Da Rin Fioretto, Claire Davidson, Kamalkumar Jayantilal Dodiya, Bilal El Houdaigui, Reham Fatima, Astrid Gall, Carlos García-Girón, Tiago Grego, Cristina Guijarro-Clarke, Leanne Haggerty, Anmol Hemrom, Thibaut Hourlier, Osagie G. Izuogu, Thomas Juettemann, Vinay Kaikala, Mike P. Kay, Ilias Lavidas, Tuan Le, Diana Lemos, Jose Gonzalez Martinez, José Carlos Marugán, Thomas Maurel, Aoife C. McMahon, Shamika Mohanan, Benjamin Moore, Matthieu Muffato, Denye N. Oheh, Dimitrios Paraschas, Anne Parker, Andrew Parton, Irina Prosovetskaia, Manoj Pandian Sakthivel, Ahamed Imran Abdul Salam, Bianca M. Schmitt, Helen Schuilenburg, Dan Sheppard, Emily Steed, Michal Szpak, Marek Szuba, Kieron R. Taylor, Anja Thormann, Glen Threadgold, Brandon Walts, Andrea Winterbottom, Marc Chakiachvili, Ameya Chaubal, Nishadi De Silva, Bethany Flint, Adam Frankish
, Sarah E. Hunt, Garth IIsley, Nick Langridge, Jane E. Loveland
, Fergal J. Martin, Jonathan M. Mudge, Joannella Morales, Emily Perry, Magali Ruffier, John G. Tate, David Thybert, Stephen J. Trevanion, Fiona Cunningham, Andrew D. Yates
, Daniel R. Zerbino, Paul Flicek
:
Ensembl 2021. Nucleic Acids Res. 49(Database-Issue): D884-D891 (2021) - [j21]Adam Frankish
, Mark Diekhans
, Irwin Jungreis
, Julien Lagarde
, Jane E. Loveland
, Jonathan M. Mudge
, Cristina Sisu
, James C. Wright
, Joel Armstrong, If Barnes, Andrew E. Berry
, Alexandra Bignell
, Carles Boix, Silvia Carbonell Sala, Fiona Cunningham
, Tomás Di Domenico, Sarah M. Donaldson
, Ian T. Fiddes, Carlos García-Girón
, Jose M. Gonzalez, Tiago Grego
, Matthew Hardy
, Thibaut Hourlier
, Kevin L. Howe
, Toby Hunt
, Osagie G. Izuogu
, Rory Johnson
, Fergal J. Martin
, Laura Martínez
, Shamika Mohanan
, Paul Muir, Fabio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Pozo
, Ferriol Calvet Riera
, Magali Ruffier
, Bianca M. Schmitt
, Eloise Stapleton, Marie-Marthe Suner
, Irina Sycheva, Barbara Uszczynska-Ratajczak, Maxim Y. Wolf, Jinrui Xu
, Yucheng T. Yang
, Andrew D. Yates
, Daniel R. Zerbino
, Yan Zhang
, Jyoti Choudhary
, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Benedict Paten, Michael L. Tress
, Paul Flicek
:
GENCODE 2021. Nucleic Acids Res. 49(Database-Issue): D916-D923 (2021) - 2020
- [j20]Gareth Peat, William Jones, Michael Nuhn, José Carlos Marugán
, William Newell, Ian Dunham
, Daniel R. Zerbino
:
The open targets post-GWAS analysis pipeline. Bioinform. 36(9): 2936-2937 (2020) - [j19]Andrew D. Yates
, Premanand Achuthan
, Wasiu A. Akanni
, James E. Allen, Jamie Allen
, Jorge Álvarez-Jarreta
, M. Ridwan Amode, Irina M. Armean
, Andrey G. Azov
, Ruth Bennett
, Jyothish Bhai
, Konstantinos Billis
, Sanjay Boddu
, José Carlos Marugán
, Carla A. Cummins
, Claire Davidson
, Kamalkumar Jayantilal Dodiya, Reham Fatima
, Astrid Gall
, Carlos García-Girón
, Laurent Gil
, Tiago Grego
, Leanne Haggerty
, Erin Haskell
, Thibaut Hourlier
, Osagie G. Izuogu
, Sophie H. Janacek
, Thomas Juettemann
, Mike P. Kay
, Ilias Lavidas
, Tuan Le, Diana Lemos, Jose Gonzalez Martinez
, Thomas Maurel
, Mark D. McDowall, Aoife McMahon
, Shamika Mohanan
, Benjamin Moore
, Michael Nuhn, Denye N. Oheh, Anne Parker, Andrew Parton
, Mateus Patricio, Manoj Pandian Sakthivel
, Ahamed Imran Abdul Salam
, Bianca M. Schmitt
, Helen Schuilenburg
, Dan Sheppard, Mira Sycheva
, Marek Szuba
, Kieron R. Taylor
, Anja Thormann
, Glen Threadgold, Alessandro Vullo, Brandon Walts
, Andrea Winterbottom
, Amonida Zadissa
, Marc Chakiachvili
, Bethany Flint
, Adam Frankish
, Sarah E. Hunt
, Garth IIsley
, Myrto Kostadima, Nick Langridge, Jane E. Loveland
, Fergal J. Martin
, Joannella Morales
, Jonathan M. Mudge
, Matthieu Muffato
, Emily Perry, Magali Ruffier
, Stephen J. Trevanion
, Fiona Cunningham
, Kevin L. Howe
, Daniel R. Zerbino
, Paul Flicek
:
Ensembl 2020. Nucleic Acids Res. 48(Database-Issue): D682-D688 (2020)
2010 – 2019
- 2019
- [j18]Wolfgang Beyer, Adam M. Novak, Glenn Hickey, Jeffrey Chan, Vanessa Tan, Benedict Paten, Daniel R. Zerbino
:
Sequence tube maps: making graph genomes intuitive to commuters. Bioinform. 35(24): 5318-5320 (2019) - [j17]Fiona Cunningham
, Premanand Achuthan
, Wasiu A. Akanni
, James E. Allen
, M. Ridwan Amode, Irina M. Armean
, Ruth Bennett
, Jyothish Bhai
, Konstantinos Billis
, Sanjay Boddu
, Carla A. Cummins
, Claire Davidson
, Kamalkumar Jayantilal Dodiya, Astrid Gall
, Carlos García-Girón
, Laurent Gil
, Tiago Grego
, Leanne Haggerty
, Erin Haskell
, Thibaut Hourlier
, Osagie G. Izuogu
, Sophie H. Janacek
, Thomas Juettemann
, Mike P. Kay
, Matthew R. Laird
, Ilias Lavidas
, Zhicheng Liu
, Jane E. Loveland
, José Carlos Marugán
, Thomas Maurel
, Aoife C. McMahon
, Benjamin Moore
, Joannella Morales
, Jonathan M. Mudge
, Michael Nuhn
, Denye N. Ogeh
, Anne Parker, Andrew Parton
, Mateus Patricio
, Ahamed Imran Abdul Salam
, Bianca M. Schmitt
, Helen Schuilenburg
, Daniel Sheppard
, Helen Sparrow, Eloise Stapleton, Marek Szuba
, Kieron R. Taylor
, Glen Threadgold
, Anja Thormann
, Alessandro Vullo
, Brandon Walts
, Andrea Winterbottom
, Amonida Zadissa
, Marc Chakiachvili
, Adam Frankish
, Sarah E. Hunt
, Myrto Kostadima
, Nick Langridge
, Fergal J. Martin
, Matthieu Muffato
, Emily Perry
, Magali Ruffier
, Daniel M. Staines
, Stephen J. Trevanion
, Bronwen L. Aken
, Andrew D. Yates
, Daniel R. Zerbino
, Paul Flicek
:
Ensembl 2019. Nucleic Acids Res. 47(Database-Issue): D745-D751 (2019) - [j16]Adam Frankish
, Mark Diekhans
, Anne-Maud Ferreira, Rory Johnson
, Irwin Jungreis
, Jane E. Loveland
, Jonathan M. Mudge
, Cristina Sisu
, James C. Wright
, Joel Armstrong, If Barnes, Andrew E. Berry
, Alexandra Bignell
, Silvia Carbonell Sala
, Jacqueline Chrast, Fiona Cunningham
, Tomás Di Domenico
, Sarah M. Donaldson
, Ian T. Fiddes, Carlos García-Girón
, Jose M. Gonzalez
, Tiago Grego
, Matthew Hardy
, Thibaut Hourlier
, Toby Hunt
, Osagie G. Izuogu
, Julien Lagarde
, Fergal J. Martin
, Laura Martínez
, Shamika Mohanan
, Paul Muir, Fabio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Pozo
, Magali Ruffier
, Bianca M. Schmitt
, Eloise Stapleton, Marie-Marthe Suner
, Irina Sycheva
, Barbara Uszczynska-Ratajczak, Jinrui Xu
, Andrew D. Yates
, Daniel R. Zerbino
, Yan Zhang, Bronwen L. Aken, Jyoti Choudhary
, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Benedict Paten, Alexandre Reymond
, Michael L. Tress
, Paul Flicek
:
GENCODE reference annotation for the human and mouse genomes. Nucleic Acids Res. 47(Database-Issue): D766-D773 (2019) - 2018
- [j15]Daniel R. Zerbino
, Premanand Achuthan
, Wasiu A. Akanni
, M. Ridwan Amode, Daniel Barrell
, Jyothish Bhai
, Konstantinos Billis
, Carla A. Cummins
, Astrid Gall
, Carlos García-Girón
, Laurent Gil
, Leo Gordon, Leanne Haggerty
, Erin Haskell
, Thibaut Hourlier
, Osagie G. Izuogu
, Sophie H. Janacek
, Thomas Juettemann
, Jimmy Kiang To, Matthew R. Laird
, Ilias Lavidas
, Zhicheng Liu, Jane E. Loveland
, Thomas Maurel
, William M. McLaren, Benjamin Moore
, Jonathan M. Mudge
, Daniel N. Murphy
, Victoria Newman, Michael Nuhn
, Denye N. Ogeh
, Chuang Kee Ong
, Anne Parker, Mateus Patricio
, Harpreet Singh Riat, Helen Schuilenburg
, Daniel Sheppard
, Helen Sparrow, Kieron R. Taylor
, Anja Thormann
, Alessandro Vullo
, Brandon Walts
, Amonida Zadissa
, Adam Frankish
, Sarah E. Hunt
, Myrto Kostadima, Nicholas Langridge
, Fergal J. Martin
, Matthieu Muffato
, Emily Perry
, Magali Ruffier
, Daniel M. Staines, Stephen J. Trevanion
, Bronwen L. Aken, Fiona Cunningham
, Andrew D. Yates
, Paul Flicek
:
Ensembl 2018. Nucleic Acids Res. 46(Database-Issue): D754-D761 (2018) - 2017
- [j14]Magali Ruffier
, Andreas Kähäri
, Monika Komorowska
, Stephen Keenan, Matthew R. Laird
, Ian Longden, Glenn Proctor, Steve Searle, Daniel M. Staines
, Kieron R. Taylor
, Alessandro Vullo
, Andrew D. Yates
, Daniel R. Zerbino
, Paul Flicek
:
Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation. Database J. Biol. Databases Curation 2017: bax020 (2017) - [j13]Bronwen L. Aken
, Premanand Achuthan
, Wasiu A. Akanni
, M. Ridwan Amode, Friederike Bernsdorff
, Jyothish Bhai
, Konstantinos Billis
, Denise Carvalho-Silva, Carla A. Cummins
, Peter Clapham, Laurent Gil, Carlos García-Girón
, Leo Gordon, Thibaut Hourlier
, Sarah E. Hunt, Sophie H. Janacek, Thomas Juettemann
, Stephen Keenan
, Matthew R. Laird
, Ilias Lavidas
, Thomas Maurel, William M. McLaren, Benjamin Moore
, Daniel N. Murphy
, Rishi Nag
, Victoria Newman, Michael Nuhn
, Chuang Kee Ong
, Anne Parker, Mateus Patricio, Harpreet Singh Riat, Daniel Sheppard, Helen Sparrow, Kieron R. Taylor, Anja Thormann, Alessandro Vullo
, Brandon Walts, Steven P. Wilder
, Amonida Zadissa
, Myrto Kostadima, Fergal J. Martin
, Matthieu Muffato
, Emily Perry
, Magali Ruffier
, Daniel M. Staines
, Stephen J. Trevanion
, Fiona Cunningham
, Andrew D. Yates
, Daniel R. Zerbino
, Paul Flicek
:
Ensembl 2017. Nucleic Acids Res. 45(Database-Issue): D635-D642 (2017) - 2016
- [j12]Daniel R. Zerbino
, Nathan Johnson, Thomas Juettemann
, Daniel Sheppard
, Steven P. Wilder
, Ilias Lavidas
, Michael Nuhn
, Emily Perry
, Quentin Raffaillac-Desfosses, Daniel Sobral
, Damian Keefe, Stefan Gräf, Ikhlak Ahmed
, Rhoda Kinsella, Bethan Pritchard, Simon Brent, M. Ridwan Amode, Anne Parker, Stephen J. Trevanion
, Ewan Birney
, Ian Dunham
, Paul Flicek
:
Ensembl regulation resources. Database J. Biol. Databases Curation 2016 (2016) - [j11]Daniel R. Zerbino, Tracy Ballinger, Benedict Paten, Glenn Hickey, David Haussler:
Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs. BMC Bioinform. 17: 400 (2016) - [j10]Andrew D. Yates, Wasiu A. Akanni
, M. Ridwan Amode, Daniel Barrell
, Konstantinos Billis, Denise Carvalho-Silva, Carla A. Cummins, Peter Clapham, Stephen Fitzgerald, Laurent Gil, Carlos García-Girón, Leo Gordon, Thibaut Hourlier, Sarah E. Hunt, Sophie H. Janacek, Nathan Johnson, Thomas Juettemann, Stephen Keenan
, Ilias Lavidas, Fergal J. Martin
, Thomas Maurel
, William M. McLaren, Daniel N. Murphy, Rishi Nag, Michael Nuhn, Anne Parker, Mateus Patricio, Miguel Pignatelli, Matthew Rahtz, Harpreet Singh Riat, Daniel Sheppard, Kieron R. Taylor, Anja Thormann, Alessandro Vullo, Steven P. Wilder, Amonida Zadissa
, Ewan Birney, Jennifer L. Harrow
, Matthieu Muffato
, Emily Perry
, Magali Ruffier, Giulietta Spudich, Stephen J. Trevanion, Fiona Cunningham
, Bronwen L. Aken, Daniel R. Zerbino
, Paul Flicek:
Ensembl 2016. Nucleic Acids Res. 44(Database-Issue): 710-716 (2016) - 2015
- [j9]Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino
, Brian J. Raney, Dent Earl, Joel Armstrong, W. James Kent, David Haussler, Benedict Paten:
Building a Pan-Genome Reference for a Population. J. Comput. Biol. 22(5): 387-401 (2015) - [j8]Fiona Cunningham
, M. Ridwan Amode, Daniel Barrell
, Kathryn Beal, Konstantinos Billis
, Simon Brent, Denise Carvalho-Silva
, Peter Clapham, Guy Coates
, Stephen Fitzgerald, Laurent Gil
, Carlos García-Girón
, Leo Gordon, Thibaut Hourlier
, Sarah E. Hunt
, Sophie H. Janacek
, Nathan Johnson, Thomas Juettemann
, Andreas K. Kähäri
, Stephen Keenan
, Fergal J. Martin
, Thomas Maurel
, William M. McLaren
, Daniel N. Murphy
, Rishi Nag
, Bert Overduin, Anne Parker, Mateus Patricio
, Emily Perry
, Miguel Pignatelli, Harpreet Singh Riat, Daniel Sheppard
, Kieron R. Taylor
, Anja Thormann
, Alessandro Vullo
, Steven P. Wilder
, Amonida Zadissa
, Bronwen L. Aken
, Ewan Birney
, Jennifer L. Harrow
, Rhoda Kinsella, Matthieu Muffato
, Magali Ruffier
, Stephen M. J. Searle, Giulietta Spudich, Stephen J. Trevanion
, Andy Yates
, Daniel R. Zerbino
, Paul Flicek
:
Ensembl 2015. Nucleic Acids Res. 43(Database-Issue): 662-669 (2015) - 2014
- [j7]Daniel R. Zerbino
, Nathan Johnson, Thomas Juettemann
, Steven P. Wilder
, Paul Flicek:
WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis. Bioinform. 30(7): 1008-1009 (2014) - [j6]Benedict Paten, Daniel R. Zerbino
, Glenn Hickey, David Haussler:
A unifying model of genome evolution under parsimony. BMC Bioinform. 15: 206 (2014) - [j5]Paul Flicek
, M. Ridwan Amode, Daniel Barrell
, Kathryn Beal, Konstantinos Billis
, Simon Brent, Denise Carvalho-Silva
, Peter Clapham, Guy Coates
, Stephen Fitzgerald, Laurent Gil
, Carlos García-Girón
, Leo Gordon, Thibaut Hourlier
, Sarah E. Hunt
, Nathan Johnson, Thomas Juettemann
, Andreas Kähäri
, Stephen Keenan
, Eugene Kulesha
, Fergal J. Martin
, Thomas Maurel
, William M. McLaren
, Daniel N. Murphy
, Rishi Nag
, Bert Overduin, Miguel Pignatelli, Bethan Pritchard
, Emily Pritchard
, Harpreet Singh Riat, Magali Ruffier
, Daniel Sheppard
, Kieron R. Taylor
, Anja Thormann
, Stephen J. Trevanion
, Alessandro Vullo
, Steven P. Wilder, Mark Wilson, Amonida Zadissa
, Bronwen L. Aken
, Ewan Birney
, Fiona Cunningham
, Jennifer L. Harrow
, Javier Herrero
, Tim J. P. Hubbard, Rhoda Kinsella, Matthieu Muffato
, Anne Parker, Giulietta Spudich, Andy Yates
, Daniel R. Zerbino, Stephen M. J. Searle:
Ensembl 2014. Nucleic Acids Res. 42(Database-Issue): 749-755 (2014) - [c1]Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian J. Raney, Dent Earl, Joel Armstrong, David Haussler, Benedict Paten:
Building a Pangenome Reference for a Population. RECOMB 2014: 207-221 - 2013
- [j4]Jing-Woei Li
, Dan M. Bolser
, Magnus Manske, Federico Manuel Giorgi
, Nikolay Vyahhi, Björn Usadel
, Bernardo J. Clavijo
, Ting-Fung Chan
, Nathalie Wong, Daniel R. Zerbino
, Maria Victoria Schneider:
The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability. Briefings Bioinform. 14(5): 548-555 (2013) - [j3]Glenn Hickey, Benedict Paten, Dent Earl, Daniel R. Zerbino
, David Haussler:
HAL: a hierarchical format for storing and analyzing multiple genome alignments. Bioinform. 29(10): 1341-1342 (2013) - 2012
- [j2]Marcel H. Schulz
, Daniel R. Zerbino
, Martin Vingron, Ewan Birney
:
Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels. Bioinform. 28(8): 1086-1092 (2012) - 2010
- [j1]Rasko Leinonen
, Ruth Akhtar, Ewan Birney
, James K. Bonfield
, Lawrence Bower, Matthew Corbett, Ying Cheng, Fehmi Demiralp, Nadeem Faruque, Neil Goodgame
, Richard Gibson, Gemma Hoad, Christopher I. Hunter
, Mikyung Jang, Steven Leonard, Quan Lin, Rodrigo Lopez
, Michael Maguire, Hamish McWilliam
, Sheila Plaister
, Rajesh Radhakrishnan
, Siamak Sobhany, Guy Slater
, Petra ten Hoopen
, Franck Valentin, Robert Vaughan
, Vadim Zalunin
, Daniel R. Zerbino
, Guy Cochrane
:
Improvements to services at the European Nucleotide Archive. Nucleic Acids Res. 38(Database-Issue): 39-45 (2010)
Coauthor Index
aka: Andrew D. Yates
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last updated on 2024-04-25 05:42 CEST by the dblp team
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