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ORCIDSolon P. Pissis
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- affiliation: Vrije Universiteit, Amsterdam, The Netherlands
- affiliation: CWI, Amsterdam, The Netherlands
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2020 – today
- 2025
[j78]Giulia Bernardini, Chang Liu, Grigorios Loukides, Alberto Marchetti-Spaccamela, Solon P. Pissis
, Leen Stougie, Michelle Sweering:
Missing value replacement in strings and applications. Data Min. Knowl. Discov. 39(2): 12 (2025)- [j77]Estéban Gabory, Njagi Moses Mwaniki, Nadia Pisanti, Solon P. Pissis, Jakub Radoszewski, Michelle Sweering, Wiktor Zuba:
Elastic-degenerate string comparison. Inf. Comput. 304: 105296 (2025) - [j76]Ling Li, Hilde Verbeek, Huiping Chen, Grigorios Loukides, Robert Gwadera, Leen Stougie, Solon P. Pissis:
Heavy Nodes in a Small Neighborhood: Exact and Peeling Algorithms With Applications. IEEE Trans. Knowl. Data Eng. 37(4): 1853-1870 (2025) - [c109]Solon P. Pissis:
Optimal prefix-suffix queries with applications. SOSA 2025: 166-171 - [i51]Lorraine A. K. Ayad, Gabriele Fici, Ragnar Groot Koerkamp, Grigorios Loukides, Rob Patro, Giulio Ermanno Pibiri, Solon P. Pissis:
U-index: A Universal Indexing Framework for Matching Long Patterns. CoRR abs/2502.14488 (2025) - [i50]Wiktor Zuba, Oded Lachish, Solon P. Pissis:
Minimizers in Semi-Dynamic Strings. CoRR abs/2502.17199 (2025) - [i49]Pawel Gawrychowski, Adam Górkiewicz, Pola Marciniak, Solon P. Pissis, Karol Pokorski:
Faster ED-String Matching with k Mismatches. CoRR abs/2503.01388 (2025) - 2024
- [j75]Panagiotis Charalampopoulos, Huiping Chen, Peter Christen, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Jakub Radoszewski:
Pattern Masking for Dictionary Matching: Theory and Practice. Algorithmica 86(6): 1948-1978 (2024) - [j74]Giulia Bernardini, Estéban Gabory, Solon P. Pissis, Leen Stougie, Michelle Sweering, Wiktor Zuba:
Elastic-Degenerate String Matching with 1 Error or Mismatch. Theory Comput. Syst. 68(5): 1442-1467 (2024) - [j73]Huiping Chen, Alessio Conte, Roberto Grossi, Grigorios Loukides, Solon P. Pissis, Michelle Sweering:
On Breaking Truss-based and Core-based Communities. ACM Trans. Knowl. Discov. Data 18(6): 135:1-135:43 (2024) - [j72]Haodi Zhong, Grigorios Loukides, Alessio Conte, Solon P. Pissis:
Ego-Network Segmentation via (Weighted) Jaccard Median. IEEE Trans. Knowl. Data Eng. 36(9): 4646-4663 (2024) - [c108]Giulia Bernardini, Huiping Chen, Inge Li Gørtz, Christoffer Krogh, Grigorios Loukides, Solon P. Pissis, Leen Stougie, Michelle Sweering:
Connecting de Bruijn Graphs. CPM 2024: 6:1-6:16 - [c107]Hilde Verbeek, Lorraine A. K. Ayad, Grigorios Loukides, Solon P. Pissis:
Minimizing the Minimizers via Alphabet Reordering. CPM 2024: 28:1-28:13 - [c106]Estéban Gabory, Chang Liu, Grigorios Loukides, Solon P. Pissis, Wiktor Zuba:
Space-Efficient Indexes for Uncertain Strings. ICDE 2024: 4828-4842 - [c105]Ling Li, Wiktor Zuba, Grigorios Loukides, Solon P. Pissis, Maria Matsangidou:
Scalable Order-Preserving Pattern Mining. ICDM 2024: 211-220 - [c104]Lorraine A. K. Ayad, Grigorios Loukides, Solon P. Pissis, Hilde Verbeek:
Sparse Suffix and LCP Array: Simple, Direct, Small, and Fast. LATIN (1) 2024: 162-177 - [c103]Wiktor Zuba, Grigorios Loukides, Solon P. Pissis, Sharma V. Thankachan:
Approximate Suffix-Prefix Dictionary Queries. MFCS 2024: 85:1-85:18 - [c102]Giulia Bernardini, Huiping Chen, Alessio Conte, Roberto Grossi, Veronica Guerrini, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis:
Utility-Oriented String Mining. SDM 2024: 190-198 - [c101]Philip Bille, Inge Li Gørtz, Moshe Lewenstein, Solon P. Pissis, Eva Rotenberg, Teresa Anna Steiner:
Gapped String Indexing in Subquadratic Space and Sublinear Query Time. STACS 2024: 16:1-16:21 - [c100]Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen, Wiktor Zuba:
Approximate Circular Pattern Matching Under Edit Distance. STACS 2024: 24:1-24:22 - [c99]Philip Bille, Yakov Nekrich, Solon P. Pissis:
Size-Constrained Weighted Ancestors with Applications. SWAT 2024: 14:1-14:12 - [e4]Rezaul Chowdhury, Solon P. Pissis:
Proceedings of the Symposium on Algorithm Engineering and Experiments, ALENEX 2024, Alexandria, VA, USA, January 7-8, 2024. SIAM 2024, ISBN 978-1-61197-792-9 [contents] - [e3]Solon P. Pissis, Wing-Kin Sung:
24th International Workshop on Algorithms in Bioinformatics, WABI 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom. LIPIcs 312, Schloss Dagstuhl - Leibniz-Zentrum für Informatik 2024, ISBN 978-3-95977-340-9 [contents] - [i48]Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen, Wiktor Zuba:
Approximate Circular Pattern Matching under Edit Distance. CoRR abs/2402.14550 (2024) - [i47]Estéban Gabory, Chang Liu, Grigorios Loukides, Solon P. Pissis, Wiktor Zuba:
Space-Efficient Indexes for Uncertain Strings. CoRR abs/2403.14256 (2024) - [i46]Hilde Verbeek, Lorraine A. K. Ayad, Grigorios Loukides, Solon P. Pissis:
Minimizing the Minimizers via Alphabet Reordering. CoRR abs/2405.04052 (2024) - [i45]Lorraine A. K. Ayad, Grigorios Loukides, Solon P. Pissis:
Text Indexing for Long Patterns using Locally Consistent Anchors. CoRR abs/2407.11819 (2024) - [i44]Solon P. Pissis:
Optimal prefix-suffix queries with applications. CoRR abs/2411.03784 (2024) - [i43]Estéban Gabory, Njagi Moses Mwaniki, Nadia Pisanti, Solon P. Pissis, Jakub Radoszewski, Michelle Sweering, Wiktor Zuba:
Elastic-Degenerate String Comparison. CoRR abs/2411.07782 (2024) - [i42]Ling Li, Wiktor Zuba, Grigorios Loukides, Solon P. Pissis, Maria Matsangidou:
Scalable Order-Preserving Pattern Mining. CoRR abs/2411.19511 (2024) - 2023
- [j71]Lorraine A. K. Ayad, Grigorios Loukides, Solon P. Pissis:
Text Indexing for Long Patterns: Anchors are All you Need. Proc. VLDB Endow. 16(9): 2117-2131 (2023) - [j70]Mai Alzamel, Christopher Hampson, Costas S. Iliopoulos, Zara Lim, Solon P. Pissis, Dimitrios Vlachakis, Steven Watts:
Maximal degenerate palindromes with gaps and mismatches. Theor. Comput. Sci. 978: 114182 (2023) - [j69]Giulia Bernardini, Alessio Conte, Garance Gourdel, Roberto Grossi, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Giulia Punzi, Leen Stougie, Michelle Sweering:
Hide and Mine in Strings: Hardness, Algorithms, and Experiments. IEEE Trans. Knowl. Data Eng. 35(6): 5948-5963 (2023) - [j68]Grigorios Loukides, Solon P. Pissis, Michelle Sweering:
Bidirectional String Anchors for Improved Text Indexing and Top-$K$ Similarity Search. IEEE Trans. Knowl. Data Eng. 35(11): 11093-11111 (2023) - [c98]Estéban Gabory, Njagi Moses Mwaniki, Nadia Pisanti, Solon P. Pissis, Jakub Radoszewski, Michelle Sweering, Wiktor Zuba:
Comparing Elastic-Degenerate Strings: Algorithms, Lower Bounds, and Applications. CPM 2023: 11:1-11:20 - [c97]Grigorios Loukides, Solon P. Pissis, Sharma V. Thankachan, Wiktor Zuba:
Suffix-Prefix Queries on a Dictionary. CPM 2023: 21:1-21:20 - [c96]Giulia Bernardini, Gabriele Fici, Pawel Gawrychowski, Solon P. Pissis:
Substring Complexity in Sublinear Space. ISAAC 2023: 12:1-12:19 - [c95]Huiping Chen, Grigorios Loukides, Robert Gwadera, Solon P. Pissis:
Heavy Nodes in a Small Neighborhood: Algorithms and Applications. SDM 2023: 307-315 - [c94]Solon P. Pissis, Michael Shekelyan, Chang Liu, Grigorios Loukides:
Frequency-Constrained Substring Complexity. SPIRE 2023: 345-352 - [i41]Lorraine A. K. Ayad, Grigorios Loukides, Solon P. Pissis, Hilde Verbeek:
Sparse Suffix and LCP Array: Simple, Direct, Small, and Fast. CoRR abs/2310.09023 (2023) - [i40]Philip Bille, Yakov Nekrich, Solon P. Pissis:
Size-constrained Weighted Ancestors with Applications. CoRR abs/2311.15777 (2023) - 2022
- [j67]Panagiotis Charalampopoulos, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Juliusz Straszynski:
Efficient Computation of Sequence Mappability. Algorithmica 84(5): 1418-1440 (2022) - [j66]Haodi Zhong, Grigorios Loukides, Solon P. Pissis:
Clustering sequence graphs. Data Knowl. Eng. 138: 101981 (2022) - [j65]Grigorios Loukides, Solon P. Pissis:
All-pairs suffix/prefix in optimal time using Aho-Corasick space. Inf. Process. Lett. 178: 106275 (2022) - [j64]Giulia Bernardini, Pawel Gawrychowski, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone:
Elastic-Degenerate String Matching via Fast Matrix Multiplication. SIAM J. Comput. 51(3): 549-576 (2022) - [j63]Golnaz Badkobeh, Panagiotis Charalampopoulos, Dmitry Kosolobov, Solon P. Pissis:
Internal shortest absent word queries in constant time and linear space. Theor. Comput. Sci. 922: 271-282 (2022) - [j62]Haodi Zhong, Grigorios Loukides, Solon P. Pissis:
Clustering Demographics and Sequences of Diagnosis Codes. IEEE J. Biomed. Health Informatics 26(5): 2351-2359 (2022) - [j61]Marco Virgolin, Solon P. Pissis:
Symbolic Regression is NP-hard. Trans. Mach. Learn. Res. 2022 (2022) - [c93]Giulia Bernardini, Huiping Chen, Grigorios Loukides, Solon P. Pissis, Leen Stougie, Michelle Sweering:
Making de Bruijn Graphs Eulerian. CPM 2022: 12:1-12:18 - [c92]Giulia Bernardini, Alessio Conte, Estéban Gabory, Roberto Grossi, Grigorios Loukides, Solon P. Pissis, Giulia Punzi, Michelle Sweering:
On Strings Having the Same Length- k Substrings. CPM 2022: 16:1-16:17 - [c91]Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski:
Longest Palindromic Substring in Sublinear Time. CPM 2022: 20:1-20:9 - [c90]Panagiotis Charalampopoulos, Tomasz Kociumaka, Jakub Radoszewski, Solon P. Pissis, Wojciech Rytter, Tomasz Walen, Wiktor Zuba:
Approximate Circular Pattern Matching. ESA 2022: 35:1-35:19 - [c89]Haodi Zhong, Grigorios Loukides, Alessio Conte, Solon P. Pissis:
Jaccard Median for Ego-network Segmentation. ICDM 2022: 1353-1358 - [c88]Giulia Bernardini, Estéban Gabory, Solon P. Pissis, Leen Stougie, Michelle Sweering, Wiktor Zuba:
Elastic-Degenerate String Matching with 1 Error. LATIN 2022: 20-37 - [c87]Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen, Wiktor Zuba:
Subsequence Covers of Words. SPIRE 2022: 3-15 - [i39]Marco Virgolin, Solon P. Pissis:
Symbolic Regression is NP-hard. CoRR abs/2207.01018 (2022) - [i38]Panagiotis Charalampopoulos, Tomasz Kociumaka, Jakub Radoszewski, Solon P. Pissis, Wojciech Rytter, Tomasz Walen, Wiktor Zuba:
Approximate Circular Pattern Matching. CoRR abs/2208.08915 (2022) - [i37]Giulia Bernardini, Estéban Gabory, Solon P. Pissis, Leen Stougie, Michelle Sweering, Wiktor Zuba:
Elastic-Degenerate String Matching with 1 Error. CoRR abs/2209.01095 (2022) - [i36]Philip Bille, Inge Li Gørtz, Moshe Lewenstein, Solon P. Pissis, Eva Rotenberg, Teresa Anna Steiner:
Gapped String Indexing in Subquadratic Space and Sublinear Query Time. CoRR abs/2211.16860 (2022) - 2021
- [j60]Hayam Alamro, Mai Alzamel, Costas S. Iliopoulos, Solon P. Pissis, Steven Watts:
IUPACpal: efficient identification of inverted repeats in IUPAC-encoded DNA sequences. BMC Bioinform. 22(1): 51 (2021) - [j59]Costas S. Iliopoulos, Ritu Kundu, Solon P. Pissis:
Efficient pattern matching in elastic-degenerate strings. Inf. Comput. 279: 104616 (2021) - [j58]Panagiotis Charalampopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Juliusz Straszynski, Tomasz Walen, Wiktor Zuba:
Circular pattern matching with k mismatches. J. Comput. Syst. Sci. 115: 73-85 (2021) - [j57]Giulia Bernardini, Huiping Chen, Gabriele Fici, Grigorios Loukides, Solon P. Pissis:
Reverse-Safe Text Indexing. ACM J. Exp. Algorithmics 26: 1.10:1-1.10:26 (2021) - [j56]Lorraine A. K. Ayad, Golnaz Badkobeh, Gabriele Fici, Alice Héliou, Solon P. Pissis:
Constructing Antidictionaries of Long Texts in Output-Sensitive Space. Theory Comput. Syst. 65(5): 777-797 (2021) - [j55]Huiping Chen, Grigorios Loukides, Solon P. Pissis, Hau Chan:
Influence maximization in the presence of vulnerable nodes: A ratio perspective. Theor. Comput. Sci. 852: 84-103 (2021) - [j54]Giulia Bernardini, Huiping Chen, Alessio Conte, Roberto Grossi, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone, Michelle Sweering:
Combinatorial Algorithms for String Sanitization. ACM Trans. Knowl. Discov. Data 15(1): 8:1-8:34 (2021) - [c86]Golnaz Badkobeh, Panagiotis Charalampopoulos, Solon P. Pissis:
Internal Shortest Absent Word Queries. CPM 2021: 6:1-6:18 - [c85]Giulia Bernardini, Alberto Marchetti-Spaccamela, Solon P. Pissis, Leen Stougie, Michelle Sweering:
Constructing Strings Avoiding Forbidden Substrings. CPM 2021: 9:1-9:18 - [c84]Takuya Mieno, Solon P. Pissis, Leen Stougie, Michelle Sweering:
String Sanitization Under Edit Distance: Improved and Generalized. CPM 2021: 19:1-19:18 - [c83]Panagiotis Charalampopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski:
Faster Algorithms for Longest Common Substring. ESA 2021: 30:1-30:17 - [c82]Grigorios Loukides, Solon P. Pissis:
Bidirectional String Anchors: A New String Sampling Mechanism. ESA 2021: 64:1-64:21 - [c81]Alessio Conte, Roberto Grossi, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Giulia Punzi:
Beyond the BEST Theorem: Fast Assessment of Eulerian Trails. FCT 2021: 162-175 - [c80]Huiping Chen, Changyu Dong, Liyue Fan, Grigorios Loukides, Solon P. Pissis, Leen Stougie:
Differentially Private String Sanitization for Frequency-Based Mining Tasks. ICDM 2021: 41-50 - [c79]Panagiotis Charalampopoulos, Huiping Chen, Peter Christen, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Jakub Radoszewski:
Pattern Masking for Dictionary Matching. ISAAC 2021: 65:1-65:19 - [c78]Huiping Chen, Alessio Conte, Roberto Grossi, Grigorios Loukides, Solon P. Pissis, Michelle Sweering:
On Breaking Truss-Based Communities. KDD 2021: 117-126 - [i35]Panagiotis Charalampopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski:
Faster Algorithms for Longest Common Substring. CoRR abs/2105.03106 (2021) - [i34]Golnaz Badkobeh, Panagiotis Charalampopoulos, Dmitry Kosolobov, Solon P. Pissis:
Internal Shortest Absent Word Queries in Constant Time and Linear Space. CoRR abs/2106.01763 (2021) - [i33]Grigorios Loukides, Solon P. Pissis, Michelle Sweering:
String Sampling with Bidirectional String Anchors. CoRR abs/2112.10376 (2021) - 2020
- [j53]Amihood Amir, Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski:
Dynamic and Internal Longest Common Substring. Algorithmica 82(12): 3707-3743 (2020) - [j52]Paniz Abedin, Arnab Ganguly, Solon P. Pissis, Sharma V. Thankachan:
Efficient Data Structures for Range Shortest Unique Substring Queries. Algorithms 13(11): 276 (2020) - [j51]Lorraine A. K. Ayad, Panagiotis Charalampopoulos, Solon P. Pissis:
SMART: SuperMaximal approximate repeats tool. Bioinform. 36(8): 2589-2591 (2020) - [j50]Mai Alzamel, Lorraine A. K. Ayad, Giulia Bernardini, Roberto Grossi, Costas S. Iliopoulos, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone:
Comparing Degenerate Strings. Fundam. Informaticae 175(1-4): 41-58 (2020) - [j49]Carl Barton, Tomasz Kociumaka, Chang Liu, Solon P. Pissis, Jakub Radoszewski:
Indexing weighted sequences: Neat and efficient. Inf. Comput. 270 (2020) - [j48]Maxime Crochemore, Alice Héliou, Gregory Kucherov, Laurent Mouchard, Solon P. Pissis, Yann Ramusat:
Absent words in a sliding window with applications. Inf. Comput. 270 (2020) - [j47]Hayam Alamro, Mai Alzamel, Costas S. Iliopoulos, Solon P. Pissis, Wing-Kin Sung, Steven Watts:
Efficient Identification of k-Closed Strings. Int. J. Found. Comput. Sci. 31(5): 595-610 (2020) - [j46]Panagiotis Charalampopoulos, Costas S. Iliopoulos, Chang Liu, Solon P. Pissis:
Property Suffix Array with Applications in Indexing Weighted Sequences. ACM J. Exp. Algorithmics 25: 1-16 (2020) - [j45]Mai Alzamel, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis, Jakub Radoszewski, Wing-Kin Sung:
Faster algorithms for 1-mappability of a sequence. Theor. Comput. Sci. 812: 2-12 (2020) - [j44]Giulia Bernardini, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone:
Approximate pattern matching on elastic-degenerate text. Theor. Comput. Sci. 812: 109-122 (2020) - [j43]Lorraine A. K. Ayad, Giulia Bernardini, Roberto Grossi, Costas S. Iliopoulos, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone:
Longest property-preserved common factor: A new string-processing framework. Theor. Comput. Sci. 812: 244-251 (2020) - [c77]Giulia Bernardini, Huiping Chen, Gabriele Fici, Grigorios Loukides, Solon P. Pissis:
Reverse-Safe Data Structures for Text Indexing. ALENEX 2020: 199-213 - [c76]Lorraine A. K. Ayad, Panagiotis Charalampopoulos, Solon P. Pissis:
SMART: SuperMaximal approximate repeats tool. BCB 2020: 17:1 - [c75]Giulia Bernardini, Huiping Chen, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Leen Stougie, Michelle Sweering:
String Sanitization Under Edit Distance. CPM 2020: 7:1-7:14 - [c74]Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski, Tomasz Walen, Wiktor Zuba:
Unary Words Have the Smallest Levenshtein k-Neighbourhoods. CPM 2020: 10:1-10:12 - [c73]Giulia Bernardini, Alessio Conte, Garance Gourdel, Roberto Grossi, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Giulia Punzi, Leen Stougie, Michelle Sweering:
Hide and Mine in Strings: Hardness and Algorithms. ICDM 2020: 924-929 - [i32]Panagiotis Charalampopoulos, Huiping Chen, Peter Christen, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Jakub Radoszewski:
Pattern Masking for Dictionary Matching. CoRR abs/2006.16137 (2020) - [i31]Takuya Mieno, Solon P. Pissis, Leen Stougie, Michelle Sweering:
String Sanitization Under Edit Distance: Improved and Generalized. CoRR abs/2007.08179 (2020) - [i30]Giulia Bernardini, Gabriele Fici, Pawel Gawrychowski, Solon P. Pissis:
Substring Complexity in Sublinear Space. CoRR abs/2007.08357 (2020)
2010 – 2019
- 2019
- [j42]Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis, Jakub Radoszewski:
On-line weighted pattern matching. Inf. Comput. 266: 49-59 (2019) - [j41]Panagiotis Charalampopoulos, Maxime Crochemore, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen:
Efficient enumeration of non-equivalent squares in partial words with few holes. J. Comb. Optim. 37(2): 501-522 (2019) - [j40]Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski:
Pattern Matching and Consensus Problems on Weighted Sequences and Profiles. Theory Comput. Syst. 63(3): 506-542 (2019) - [j39]Yannis Almirantis, Panagiotis Charalampopoulos, Jia Gao, Costas S. Iliopoulos, Manal Mohamed, Solon P. Pissis, Dimitris Polychronopoulos:
On overabundant words and their application to biological sequence analysis. Theor. Comput. Sci. 792: 85-95 (2019) - [c72]Arnab Ganguly, Wing-Kai Hon, Yu-An Huang, Solon P. Pissis, Rahul Shah, Sharma V. Thankachan:
Parameterized Text Indexing with One Wildcard. DCC 2019: 152-161 - [c71]Lorraine A. K. Ayad, Golnaz Badkobeh, Gabriele Fici, Alice Héliou, Solon P. Pissis:
Constructing Antidictionaries in Output-Sensitive Space. DCC 2019: 538-547 - [c70]Amihood Amir, Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski:
Longest Common Substring Made Fully Dynamic. ESA 2019: 6:1-6:17 - [c69]Panagiotis Charalampopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Juliusz Straszynski, Tomasz Walen, Wiktor Zuba:
Circular Pattern Matching with k Mismatches. FCT 2019: 213-228 - [c68]Giulia Bernardini, Pawel Gawrychowski, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone:
Even Faster Elastic-Degenerate String Matching via Fast Matrix Multiplication. ICALP 2019: 21:1-21:15 - [c67]Giulia Bernardini, Huiping Chen, Alessio Conte, Roberto Grossi, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone:
String Sanitization: A Combinatorial Approach. ECML/PKDD (1) 2019: 627-644 - [c66]Panagiotis Charalampopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Juliusz Straszynski, Tomasz Walen, Wiktor Zuba:
Weighted Shortest Common Supersequence Problem Revisited. SPIRE 2019: 221-238 - [c65]Paniz Abedin, Arnab Ganguly, Solon P. Pissis, Sharma V. Thankachan:
Range Shortest Unique Substring Queries. SPIRE 2019: 258-266 - [e2]Nadia Pisanti, Solon P. Pissis:
30th Annual Symposium on Combinatorial Pattern Matching, CPM 2019, June 18-20, 2019, Pisa, Italy. LIPIcs 128, Schloss Dagstuhl - Leibniz-Zentrum für Informatik 2019, ISBN 978-3-95977-103-0 [contents] - [i29]Lorraine A. K. Ayad, Golnaz Badkobeh, Gabriele Fici, Alice Héliou, Solon P. Pissis:
Constructing Antidictionaries in Output-Sensitive Space. CoRR abs/1902.04785 (2019) - [i28]Giulia Bernardini, Pawel Gawrychowski, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone:
Even Faster Elastic-Degenerate String Matching via Fast Matrix Multiplication. CoRR abs/1905.02298 (2019) - [i27]Giulia Bernardini, Huiping Chen, Alessio Conte, Roberto Grossi, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone:
String Sanitization: A Combinatorial Approach. CoRR abs/1906.11030 (2019) - [i26]Panagiotis Charalampopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Juliusz Straszynski, Tomasz Walen, Wiktor Zuba:
Circular Pattern Matching with k Mismatches. CoRR abs/1907.01815 (2019) - [i25]Panagiotis Charalampopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Juliusz Straszynski, Tomasz Walen, Wiktor Zuba:
Weighted Shortest Common Supersequence Problem Revisited. CoRR abs/1909.11433 (2019) - 2018
- [j38]Carl Barton, Solon P. Pissis:
Crochemore's Partitioning on Weighted Strings and Applications. Algorithmica 80(2): 496-514 (2018) - [j37]João A. Carriço, Maxime Crochemore, Alexandre P. Francisco, Solon P. Pissis, Bruno Ribeiro-Gonçalves, Cátia Vaz:
Fast phylogenetic inference from typing data. Algorithms Mol. Biol. 13(1): 4:1-4:14 (2018) - [j36]Lorraine A. K. Ayad, Solon P. Pissis, Dimitris Polychronopoulos:
CNEFinder: finding conserved non-coding elements in genomes. Bioinform. 34(17): i743-i747 (2018) - [j35]Panagiotis Charalampopoulos, Maxime Crochemore, Solon P. Pissis:
Preface. Fundam. Informaticae 163(3): i (2018) - [j34]Panagiotis Charalampopoulos, Maxime Crochemore, Gabriele Fici, Robert Mercas, Solon P. Pissis:
Alignment-free sequence comparison using absent words. Inf. Comput. 262: 57-68 (2018) - [j33]Carl Barton, Chang Liu, Solon P. Pissis:
Fast Average-Case Pattern Matching on Weighted Sequences. Int. J. Found. Comput. Sci. 29(8): 1331-1343 (2018) - [j32]Maxime Crochemore, Solon P. Pissis:
Advances in Algorithms & Combinatorics on Strings (Honoring 60th birthday for Prof. Costas S. Iliopoulos). Theor. Comput. Sci. 710: 1 (2018) - [j31]Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen:
Efficient algorithms for shortest partial seeds in words. Theor. Comput. Sci. 710: 139-147 (2018) - [c64]Panagiotis Charalampopoulos, Maxime Crochemore, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen:
Linear-Time Algorithm for Long LCF with k Mismatches. CPM 2018: 23:1-23:16 - [c63]Tomasz Kociumaka, Ritu Kundu, Manal Mohamed, Solon P. Pissis:
Longest Unbordered Factor in Quasilinear Time. ISAAC 2018: 70:1-70:13 - [c62]Panagiotis Charalampopoulos, Costas S. Iliopoulos, Chang Liu, Solon P. Pissis:
Property Suffix Array with Applications. LATIN 2018: 290-302 - [c61]Hayam Alamro, Lorraine A. K. Ayad, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis:
Longest Common Prefixes with k-Mismatches and Applications. SOFSEM 2018: 636-649 - [c60]Mai Alzamel, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Juliusz Straszynski:
Efficient Computation of Sequence Mappability. SPIRE 2018: 12-26 - [c59]Lorraine A. K. Ayad, Carl Barton, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis:
Longest Common Prefixes with k-Errors and Applications. SPIRE 2018: 27-41 - [c58]Lorraine A. K. Ayad, Giulia Bernardini, Roberto Grossi, Costas S. Iliopoulos, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone:
Longest Property-Preserved Common Factor. SPIRE 2018: 42-49 - [c57]Panagiotis Charalampopoulos, Maxime Crochemore, Solon P. Pissis:
On Extended Special Factors of a Word. SPIRE 2018: 131-138 - [c56]Costas S. Iliopoulos, Manal Mohamed, Solon P. Pissis, Fatima Vayani:
Maximal Motif Discovery in a Sliding Window. SPIRE 2018: 191-205 - [c55]Mai Alzamel, Lorraine A. K. Ayad, Giulia Bernardini, Roberto Grossi, Costas S. Iliopoulos, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone:
Degenerate String Comparison and Applications. WABI 2018: 21:1-21:14 - [c54]Solon P. Pissis, Ahmad Retha:
Dictionary Matching in Elastic-Degenerate Texts with Applications in Searching VCF Files On-line. SEA 2018: 16:1-16:14 - [i24]Lorraine A. K. Ayad, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis:
Longest Common Prefixes with k-Errors and Applications. CoRR abs/1801.04425 (2018) - [i23]Panagiotis Charalampopoulos, Maxime Crochemore, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen:
Linear-Time Algorithm for Long LCF with k Mismatches. CoRR abs/1802.06369 (2018) - [i22]Amihood Amir, Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski:
Longest Common Factor Made Fully Dynamic. CoRR abs/1804.08731 (2018) - [i21]Tomasz Kociumaka, Ritu Kundu, Manal Mohamed, Solon P. Pissis:
Longest Unbordered Factor in Quasilinear Time. CoRR abs/1805.09924 (2018) - [i20]Panagiotis Charalampopoulos, Maxime Crochemore, Gabriele Fici, Robert Mercas, Solon P. Pissis:
Alignment-free sequence comparison using absent words. CoRR abs/1806.02718 (2018) - [i19]Mai Alzamel, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Juliusz Straszynski:
Efficient Computation of Sequence Mappability. CoRR abs/1807.11702 (2018) - [i18]Lorraine A. K. Ayad, Giulia Bernardini, Roberto Grossi, Costas S. Iliopoulos, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone:
Longest Property-Preserved Common Factor. CoRR abs/1810.02099 (2018) - 2017
- [j30]Yannis Almirantis, Panagiotis Charalampopoulos, Jia Gao, Costas S. Iliopoulos, Manal Mohamed, Solon P. Pissis, Dimitris Polychronopoulos:
On avoided words, absent words, and their application to biological sequence analysis. Algorithms Mol. Biol. 12(1): 5:1-5:12 (2017) - [j29]Alice Héliou, Solon P. Pissis, Simon J. Puglisi:
emMAW: computing minimal absent words in external memory. Bioinform. 33(17): 2746-2749 (2017) - [j28]Tanver Athar, Carl Barton, Widmer Bland, Jia Gao, Costas S. Iliopoulos, Chang Liu, Solon P. Pissis:
Fast circular dictionary-matching algorithm. Math. Struct. Comput. Sci. 27(2): 143-156 (2017) - [j27]Lorraine A. K. Ayad, Carl Barton, Solon P. Pissis:
A faster and more accurate heuristic for cyclic edit distance computation. Pattern Recognit. Lett. 88: 81-87 (2017) - [c53]Mai Alzamel, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis, Jakub Radoszewski, Wing-Kin Sung:
Faster Algorithms for 1-Mappability of a Sequence. COCOA (2) 2017: 109-121 - [c52]Panagiotis Charalampopoulos, Maxime Crochemore, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen:
Efficient Enumeration of Non-Equivalent Squares in Partial Words with Few Holes. COCOON 2017: 99-111 - [c51]Roberto Grossi, Costas S. Iliopoulos, Chang Liu, Nadia Pisanti, Solon P. Pissis, Ahmad Retha, Giovanna Rosone, Fatima Vayani, Luca Versari:
On-Line Pattern Matching on Similar Texts. CPM 2017: 9:1-9:14 - [c50]Hayam Alamro, Mai Alzamel, Costas S. Iliopoulos, Solon P. Pissis, Steven Watts, Wing-Kin Sung:
Efficient Identification of k-Closed Strings. EANN 2017: 583-595 - [c49]Mai Alzamel, Jia Gao, Costas S. Iliopoulos, Chang Liu, Solon P. Pissis:
Efficient Computation of Palindromes in Sequences with Uncertainties. EANN 2017: 620-629 - [c48]Maxime Crochemore, Alice Héliou, Gregory Kucherov, Laurent Mouchard, Solon P. Pissis, Yann Ramusat:
Minimal Absent Words in a Sliding Window and Applications to On-Line Pattern Matching. FCT 2017: 164-176 - [c47]Mai Alzamel, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis:
How to Answer a Small Batch of RMQs or LCA Queries in Practice. IWOCA 2017: 343-355 - [c46]Costas S. Iliopoulos, Ritu Kundu, Solon P. Pissis:
Efficient Pattern Matching in Elastic-Degenerate Texts. LATA 2017: 131-142 - [c45]Amihood Amir, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis, Jakub Radoszewski:
Longest Common Factor After One Edit Operation. SPIRE 2017: 14-26 - [c44]Giulia Bernardini, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone:
Pattern Matching on Elastic-Degenerate Text with Errors. SPIRE 2017: 74-90 - [c43]Yannis Almirantis, Panagiotis Charalampopoulos, Jia Gao, Costas S. Iliopoulos, Manal Mohamed, Solon P. Pissis, Dimitris Polychronopoulos:
Optimal Computation of Overabundant Words. WABI 2017: 4:1-4:14 - [c42]Maxime Crochemore, Alexandre P. Francisco, Solon P. Pissis, Cátia Vaz:
Towards Distance-Based Phylogenetic Inference in Average-Case Linear-Time. WABI 2017: 9:1-9:14 - [p1]Costas S. Iliopoulos, Solon P. Pissis, M. Sohel Rahman:
Searching and Indexing Circular Patterns. Algorithms for Next-Generation Sequencing Data 2017: 77-90 - [e1]Costas S. Iliopoulos, Solon P. Pissis, Simon J. Puglisi, Rajeev Raman:
16th International Symposium on Experimental Algorithms, SEA 2017, June 21-23, 2017, London, UK. LIPIcs 75, Schloss Dagstuhl - Leibniz-Zentrum für Informatik 2017, ISBN 978-3-95977-036-1 [contents] - [i17]Carl Barton, Tomasz Kociumaka, Chang Liu, Solon P. Pissis, Jakub Radoszewski:
Indexing Weighted Sequences: Neat and Efficient. CoRR abs/1704.07625 (2017) - [i16]Yannis Almirantis, Panagiotis Charalampopoulos, Jia Gao, Costas S. Iliopoulos, Manal Mohamed, Solon P. Pissis, Dimitris Polychronopoulos:
Optimal Computation of Overabundant Words. CoRR abs/1705.03385 (2017) - [i15]Mai Alzamel, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis, Jakub Radoszewski, Wing-Kin Sung:
Faster algorithms for 1-mappability of a sequence. CoRR abs/1705.04022 (2017) - [i14]Mai Alzamel, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis:
How to answer a small batch of RMQs or LCA queries in practice. CoRR abs/1705.04589 (2017) - 2016
- [j26]Roberto Grossi, Costas S. Iliopoulos, Robert Mercas, Nadia Pisanti, Solon P. Pissis, Ahmad Retha, Fatima Vayani:
Circular sequence comparison: algorithms and applications. Algorithms Mol. Biol. 11: 12 (2016) - [j25]Roberto Grossi, Costas S. Iliopoulos, Robert Mercas, Nadia Pisanti, Solon P. Pissis, Ahmad Retha, Fatima Vayani:
Erratum to: Circular sequence comparison: algorithms and applications. Algorithms Mol. Biol. 11: 21 (2016) - [j24]Lorraine A. K. Ayad, Solon P. Pissis, Ahmad Retha:
libFLASM: a software library for fixed-length approximate string matching. BMC Bioinform. 17: 454:1-454:12 (2016) - [j23]Ljiljana Brankovic, Costas S. Iliopoulos, Ritu Kundu, Manal Mohamed, Solon P. Pissis, Fatima Vayani:
Linear-time superbubble identification algorithm for genome assembly. Theor. Comput. Sci. 609: 374-383 (2016) - [j22]Maxime Crochemore, Costas S. Iliopoulos, Tomasz Kociumaka, Marcin Kubica, Alessio Langiu, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen:
Order-preserving indexing. Theor. Comput. Sci. 638: 122-135 (2016) - [j21]Carl Barton, Chang Liu, Solon P. Pissis:
Linear-time computation of prefix table for weighted strings & applications. Theor. Comput. Sci. 656: 160-172 (2016) - [c41]Carl Barton, Chang Liu, Solon P. Pissis:
On-Line Pattern Matching on Uncertain Sequences and Applications. COCOA 2016: 547-562 - [c40]Carl Barton, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski:
Efficient Index for Weighted Sequences. CPM 2016: 4:1-4:13 - [c39]Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski:
Pattern Matching and Consensus Problems on Weighted Sequences and Profiles. ISAAC 2016: 46:1-46:12 - [c38]Maxime Crochemore, Gabriele Fici, Robert Mercas, Solon P. Pissis:
Linear-Time Sequence Comparison Using Minimal Absent Words & Applications. LATIN 2016: 334-346 - [c37]Maxime Crochemore, Costas S. Iliopoulos, Tomasz Kociumaka, Ritu Kundu, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen:
Near-Optimal Computation of Runs over General Alphabet via Non-Crossing LCE Queries. SPIRE 2016: 22-34 - [c36]Yannis Almirantis, Panagiotis Charalampopoulos, Jia Gao, Costas S. Iliopoulos, Manal Mohamed, Solon P. Pissis, Dimitris Polychronopoulos:
Optimal Computation of Avoided Words. WABI 2016: 1-13 - [i13]Carl Barton, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski:
Efficient Index for Weighted Sequences. CoRR abs/1602.01116 (2016) - [i12]Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski:
Parameterizing PWM- and Profile-Matching and Knapsack by the feasible-weight solutions count. CoRR abs/1604.07581 (2016) - [i11]Yannis Almirantis, Panagiotis Charalampopoulos, Jia Gao, Costas S. Iliopoulos, Manal Mohamed, Solon P. Pissis, Dimitris Polychronopoulos:
Optimal Computation of Avoided Words. CoRR abs/1604.08760 (2016) - [i10]Maxime Crochemore, Costas S. Iliopoulos, Tomasz Kociumaka, Ritu Kundu, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen:
Near-Optimal Computation of Runs over General Alphabet via Non-Crossing LCE Queries. CoRR abs/1606.08275 (2016) - [i9]Costas S. Iliopoulos, Ritu Kundu, Solon P. Pissis:
Efficient Pattern Matching in Elastic-Degenerate Strings. CoRR abs/1610.08111 (2016) - 2015
- [j20]Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen:
Fast Algorithm for Partial Covers in Words. Algorithmica 73(1): 217-233 (2015) - [j19]Hideo Bannai, Solon P. Pissis:
Editorial. J. Discrete Algorithms 34: 1 (2015) - [j18]Carl Barton, Tomás Flouri, Costas S. Iliopoulos, Solon P. Pissis:
Global and local sequence alignment with a bounded number of gaps. Theor. Comput. Sci. 582: 1-16 (2015) - [c35]Carl Barton, Solon P. Pissis:
Linear-Time Computation of Prefix Table for Weighted Strings. WORDS 2015: 73-84 - [c34]Solon P. Pissis, Ahmad Retha:
Generalised Implementation for Fixed-Length Approximate String Matching under Hamming Distance and Applications. IPDPS Workshops 2015: 367-374 - [c33]Carl Barton, Costas S. Iliopoulos, Solon P. Pissis:
Average-Case Optimal Approximate Circular String Matching. LATA 2015: 85-96 - [c32]Carl Barton, Alice Héliou, Laurent Mouchard, Solon P. Pissis:
Parallelising the Computation of Minimal Absent Words. PPAM (2) 2015: 243-253 - [c31]Roberto Grossi, Costas S. Iliopoulos, Robert Mercas, Nadia Pisanti, Solon P. Pissis, Ahmad Retha, Fatima Vayani:
Circular Sequence Comparison with q-grams. WABI 2015: 203-216 - [c30]Carl Barton, Costas S. Iliopoulos, Ritu Kundu, Solon P. Pissis, Ahmad Retha, Fatima Vayani:
Accurate and Efficient Methods to Improve Multiple Circular Sequence Alignment. SEA 2015: 247-258 - [i8]Ljiljana Brankovic, Costas S. Iliopoulos, Ritu Kundu, Manal Mohamed, Solon P. Pissis, Fatima Vayani:
Linear-Time Superbubble Identification Algorithm. CoRR abs/1505.04019 (2015) - [i7]Maxime Crochemore, Gabriele Fici, Robert Mercas, Solon P. Pissis:
Linear-Time Sequence Comparison Using Minimal Absent Words & Applications. CoRR abs/1506.04917 (2015) - [i6]Carl Barton, Chang Liu, Solon P. Pissis:
Fast Average-Case Pattern Matching on Weighted Sequences. CoRR abs/1512.01085 (2015) - 2014
- [j17]Carl Barton, Costas S. Iliopoulos, Solon P. Pissis:
Fast algorithms for approximate circular string matching. Algorithms Mol. Biol. 9: 9 (2014) - [j16]Carl Barton, Costas S. Iliopoulos, Solon P. Pissis:
Optimal computation of all tandem repeats in a weighted sequence. Algorithms Mol. Biol. 9: 21 (2014) - [j15]Solon P. Pissis:
MoTeX-II: structured MoTif eXtraction from large-scale datasets. BMC Bioinform. 15: 235 (2014) - [j14]Carl Barton, Alice Héliou, Laurent Mouchard, Solon P. Pissis:
Linear-time computation of minimal absent words using suffix array. BMC Bioinform. 15: 388 (2014) - [j13]Carl Barton, Costas S. Iliopoulos, Inbok Lee, Laurent Mouchard, Kunsoo Park, Solon P. Pissis:
Extending alignments with k-mismatches and ℓ-gaps. Theor. Comput. Sci. 525: 80-88 (2014) - [c29]Vida Ghanaei, Costas S. Iliopoulos, Solon P. Pissis:
Detection of Web Spambot in the Presence of Decoy Actions. BDCloud 2014: 277-279 - [c28]Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen:
Efficient Algorithms for Shortest Partial Seeds in Words. CPM 2014: 192-201 - [c27]Carl Barton, Solon P. Pissis:
Optimal Computation of all Repetitions in a Weighted String. ICABD 2014: 9-15 - [c26]Carl Barton, Costas S. Iliopoulos, Solon P. Pissis, William F. Smyth:
Fast and Simple Computations Using Prefix Tables Under Hamming and Edit Distance. IWOCA 2014: 49-61 - [i5]Tomasz Kociumaka, Jakub Radoszewski, Wojciech Rytter, Solon P. Pissis, Tomasz Walen:
Fast Algorithm for Partial Covers in Words. CoRR abs/1401.0163 (2014) - [i4]Carl Barton, Costas S. Iliopoulos, Solon P. Pissis:
Average-Case Optimal Approximate Circular String Matching. CoRR abs/1406.5480 (2014) - [i3]Carl Barton, Alice Héliou, Laurent Mouchard, Solon P. Pissis:
Linear-time Computation of Minimal Absent Words Using Suffix Array. CoRR abs/1406.6341 (2014) - 2013
- [j12]Nikolaos Alachiotis, Simon A. Berger, Tomás Flouri, Solon P. Pissis, Alexandros Stamatakis:
libgapmis: extending short-read alignments. BMC Bioinform. 14(S-11): S4 (2013) - [j11]Carl Barton, Mathieu Giraud, Costas S. Iliopoulos, Thierry Lecroq, Laurent Mouchard, Solon P. Pissis:
Querying highly similar sequences. Int. J. Comput. Biol. Drug Des. 6(1/2): 119-130 (2013) - [j10]Michalis Christou, Tomás Flouri, Costas S. Iliopoulos, Jan Janousek, Borivoj Melichar, Solon P. Pissis, Jan Zdárek:
Tree template matching in unranked ordered trees. J. Discrete Algorithms 20: 51-60 (2013) - [j9]Michalis Christou, Maxime Crochemore, Costas S. Iliopoulos, Marcin Kubica, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Bartosz Szreder, Tomasz Walen:
Efficient seed computation revisited. Theor. Comput. Sci. 483: 171-181 (2013) - [j8]Tomás Flouri, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Simon J. Puglisi, W. F. Smyth, Wojciech Tyczynski:
Enhanced string covering. Theor. Comput. Sci. 506: 102-114 (2013) - [c25]Solon P. Pissis, Alexandros Stamatakis, Pavlos Pavlidis:
MoTeX: A word-based HPC tool for MoTif eXtraction. BCB 2013: 13 - [c24]Carl Barton, Tomás Flouri, Costas S. Iliopoulos, Solon P. Pissis:
GapsMis: flexible sequence alignment with a bounded number of gaps. BCB 2013: 402 - [c23]Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen:
Fast Algorithm for Partial Covers in Words. CPM 2013: 177-188 - [c22]Fernando Izquierdo-Carrasco, Nikolaos Alachiotis, Simon A. Berger, Tomás Flouri, Solon P. Pissis, Alexandros Stamatakis:
A Generic Vectorization Scheme and a GPU Kernel for the Phylogenetic Likelihood Library. IPDPS Workshops 2013: 530-538 - [c21]Tomás Flouri, Kassian Kobert, Solon P. Pissis, Alexandros Stamatakis:
An Optimal Algorithm for Computing All Subtree Repeats in Trees. IWOCA 2013: 269-282 - [c20]Solon P. Pissis, Christian Goll, Pavlos Pavlidis, Alexandros Stamatakis:
Accelerating String Matching on MIC Architecture for Motif Extraction. PPAM (2) 2013: 258-267 - [c19]Maxime Crochemore, Costas S. Iliopoulos, Tomasz Kociumaka, Marcin Kubica, Alessio Langiu, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen:
Order-Preserving Incomplete Suffix Trees and Order-Preserving Indexes. SPIRE 2013: 84-95 - [i2]Maxime Crochemore, Costas S. Iliopoulos, Tomasz Kociumaka, Marcin Kubica, Alessio Langiu, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen:
Order-Preserving Suffix Trees and Their Algorithmic Applications. CoRR abs/1303.6872 (2013) - 2012
- [j7]Costas S. Iliopoulos, Mirka Miller, Solon P. Pissis:
Parallel Algorithms for Mapping Short degenerate and Weighted DNA Sequences to a Reference genome. Int. J. Found. Comput. Sci. 23(2): 249-259 (2012) - [j6]Michalis Christou, Maxime Crochemore, Tomás Flouri, Costas S. Iliopoulos, Jan Janousek, Borivoj Melichar, Solon P. Pissis:
Computing all subtree repeats in ordered trees. Inf. Process. Lett. 112(24): 958-962 (2012) - [j5]Costas S. Iliopoulos, Derrick G. Kourie, Laurent Mouchard, Themba K. Musombuka, Solon P. Pissis, Corné de Ridder:
An algorithm for mapping short reads to a dynamically changing genomic sequence. J. Discrete Algorithms 10: 15-22 (2012) - [j4]Tomás Flouri, Costas S. Iliopoulos, Jan Janousek, Borivoj Melichar, Solon P. Pissis:
Tree template matching in ranked ordered trees by pushdown automata. J. Discrete Algorithms 17: 15-23 (2012) - [j3]Michalis Christou, Maxime Crochemore, Ondrej Guth, Costas S. Iliopoulos, Solon P. Pissis:
On left and right seeds of a string. J. Discrete Algorithms 17: 31-44 (2012) - [c18]Nikolaos Alachiotis, Simon A. Berger, Tomás Flouri, Solon P. Pissis, Alexandros Stamatakis:
Libgapmis: An ultrafast library for short-read single-gap alignment. BIBM Workshops 2012: 688-695 - [c17]Mourad Elloumi, Pedram Hayati, Costas S. Iliopoulos, Solon P. Pissis, Arfaat Shah:
Detection of fixed length web spambot using REAL (read aligner). CUBE 2012: 820-825 - [c16]Tomás Flouri, Costas S. Iliopoulos, Kunsoo Park, Solon P. Pissis:
GapMis-OMP: Pairwise Short-Read Alignment on Multi-core Architectures. AIAI (2) 2012: 593-601 - [c15]Tomás Flouri, Costas S. Iliopoulos, Tomasz Kociumaka, Solon P. Pissis, Simon J. Puglisi, William F. Smyth, Wojciech Tyczynski:
New and Efficient Approaches to the Quasiperiodic Characterisation of a String. Stringology 2012: 75-88 - 2011
- [j2]Oudone Phanalasy, Mirka Miller, Costas S. Iliopoulos, Solon P. Pissis, Elaheh Vaezpour:
Construction of Antimagic Labeling for the Cartesian Product of Regular Graphs. Math. Comput. Sci. 5(1): 81-87 (2011) - [c14]Tomás Flouri, Costas S. Iliopoulos, Solon P. Pissis:
DynMap: mapping short reads to multiple related genomes. BCB 2011: 330-334 - [c13]Tomás Flouri, Kunsoo Park, Kimon Frousios, Solon P. Pissis, Costas S. Iliopoulos, German Tischler:
Approximate string-matching with a single gap for sequence alignment. BCB 2011: 490-492 - [c12]Michalis Christou, Maxime Crochemore, Ondrej Guth, Costas S. Iliopoulos, Solon P. Pissis:
On the Right-Seed Array of a String. COCOON 2011: 492-502 - [c11]Michalis Christou, Maxime Crochemore, Costas S. Iliopoulos, Marcin Kubica, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Bartosz Szreder, Tomasz Walen:
Efficient Seeds Computation Revisited. CPM 2011: 350-363 - [c10]Tomás Flouri, Jan Janousek, Borivoj Melichar, Costas S. Iliopoulos, Solon P. Pissis:
Tree Indexing by Pushdown Automata and Repeats of Subtrees. FedCSIS 2011: 899-902 - [c9]Michalis Christou, Maxime Crochemore, Tomás Flouri, Costas S. Iliopoulos, Jan Janousek, Borivoj Melichar, Solon P. Pissis:
Computing All Subtree Repeats in Ordered Ranked Trees. SPIRE 2011: 338-343 - [c8]Tomás Flouri, Jan Janousek, Borivoj Melichar, Costas S. Iliopoulos, Solon P. Pissis:
Tree Template Matching in Ranked Ordered Trees by Pushdown Automata. CIAA 2011: 273-281 - [i1]Michalis Christou, Maxime Crochemore, Costas S. Iliopoulos, Marcin Kubica, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Bartosz Szreder, Tomasz Walen:
Efficient Seeds Computation Revisited. CoRR abs/1104.3153 (2011) - 2010
- [c7]Kimon Frousios, Costas S. Iliopoulos, Laurent Mouchard, Solon P. Pissis, German Tischler:
REAL: an efficient REad ALigner for next generation sequencing reads. BCB 2010: 154-159 - [c6]Tomás Flouri, Jan Holub, Costas S. Iliopoulos, Solon P. Pissis:
An algorithm for mapping short reads to a dynamically changing genomic sequence. BIBM 2010: 133-136 - [c5]Maxime Crochemore, Costas S. Iliopoulos, Solon P. Pissis:
A Parallel Algorithm for Fixed-Length Approximate String-Matching with k-mismatches. Algorithms and Applications 2010: 92-101 - [c4]Maxime Crochemore, Costas S. Iliopoulos, Solon P. Pissis, German Tischler:
Cover Array String Reconstruction. CPM 2010: 251-259
2000 – 2009
- 2009
- [j1]Pavlos Antoniou, Costas S. Iliopoulos, Laurent Mouchard, Solon P. Pissis:
Algorithms for mapping short degenerate and weighted sequences to a reference genome. Int. J. Comput. Biol. Drug Des. 2(4): 385-397 (2009) - [c3]Pavlos Antoniou, Costas S. Iliopoulos, Laurent Mouchard, Solon P. Pissis:
Practical and Efficient Algorithms for Degenerate and Weighted Sequences Derived from High Throughput Sequencing Technologies. IJCBS 2009: 174-180 - [c2]Costas S. Iliopoulos, Laurent Mouchard, Solon P. Pissis:
A Parallel Algorithm for the Fixed-length Approximate String Matching Problem for High Throughput Sequencing Technologies. PARCO 2009: 150-157 - [c1]Costas S. Iliopoulos, Mirka Miller, Solon P. Pissis:
Parallel Algorithms for Degenerate and Weighted Sequences Derived from High Throughput Sequencing Technologies. Stringology 2009: 249-262
Coauthor Index
Mai Abdulaziz Alzamel
aka: Mai Alzamel
aka: Mai Alzamel
[j75] [c100] [i48] [j67] [j63] [c91] [c90] [c87] [i38] [j58] [c86] [c83] [c79] [i35] [i34] [j53] [j51] [j46] [j45] [c76] [c74] [i32] [j42] [j41] [j39] [c70] [c69] [c66] [i26] [i25] [j35] [j34] [c64] [c62] [c61] [c60] [c59] [c57] [i24] [i23] [i22] [i20] [i19] [j30] [c53] [c52] [c47] [c45] [c43] [i16] [i15] [i14] [c36] [i11]
[j70] [j67] [j60] [j59] [j50] [j47] [j46] [j45] [j43] [j42] [j41] [j39] [c64] [c62] [c61] [c60] [c59] [c58] [c56] [c55] [i24] [i23] [i19] [i18] [j30] [j28] [c53] [c52] [c51] [c50] [c49] [c47] [c46] [c45] [c43] [p1] [e1] [i16] [i15] [i14] [j26] [j25] [j23] [j22] [c37] [c36] [i11] [i10] [i9] [j18] [c33] [c31] [c30] [i8] [j17] [j16] [j13] [c29] [c26] [i4] [j11] [j10] [j9] [j8] [c24] [c19] [i2] [j7] [j6] [j5] [j4] [j3] [c17] [c16] [c15] [j2] [c14] [c13] [c12] [c11] [c10] [c9] [c8] [i1] [c7] [c6] [c5] [c4] [j1] [c3] [c2] [c1]
[j77] [j75] [c100] [i48] [i43] [c98] [j67] [c91] [c90] [c87] [i38] [j58] [c83] [c79] [i35] [j53] [j49] [j45] [c74] [i32] [j42] [j41] [j40] [c70] [c69] [c66] [i26] [i25] [j31] [c64] [c60] [i23] [i22] [i19] [c53] [c52] [c45] [i17] [i15] [j22] [c40] [c39] [c37] [i13] [i12] [i10] [j20] [c28] [i5] [j9] [c23] [c19] [i2] [c11] [i1]
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