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ORCIDMatthieu-P. Schapranow
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- affiliation: Hasso Plattner Institute for Digital Engineering, Potsdam
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Books and Theses
- 2014
[b1]Matthieu-Patrick Schapranow:
Real-time security extensions for EPCglobal networks: case study for the pharmaceutical industry. University of Potsdam, Springer 2014, ISBN 978-3-642-36342-9, pp. 1-146
Journal Articles
- 2024
- [j6]Florian Borchert
, Ignacio Llorca, Matthieu-P. Schapranow:
Improving biomedical entity linking for complex entity mentions with LLM-based text simplification. Database J. Biol. Databases Curation 2024 (2024) - 2023
- [j5]Matthieu-P. Schapranow, Florian Borchert, Nina Bougatf, Hauke Hund, Roland Eils:
Software-Tool Support for Collaborative, Virtual, Multi-Site Molecular Tumor Boards. SN Comput. Sci. 4(4): 358 (2023) - 2021
- [j4]Harry Freitas Da Cruz, Boris Pfahringer, Tom Martensen, Frederic Schneider, Alexander Meyer, Erwin P. Böttinger, Matthieu-P. Schapranow:
Using interpretability approaches to update "black-box" clinical prediction models: an external validation study in nephrology. Artif. Intell. Medicine 111: 101982 (2021) - [j3]Florian Borchert, Andreas Mock, Aurelie Tomczak, Jonas Hügel, Samer Alkarkoukly, Alexander Knurr, Anna-Lena Volckmar, Albrecht Stenzinger, Peter Schirmacher, Jürgen Debus, Dirk Jäger, Thomas Longerich, Stefan Fröhling, Roland Eils, Nina Bougatf, Ulrich Sax, Matthieu-P. Schapranow:
Knowledge bases and software support for variant interpretation in precision oncology. Briefings Bioinform. 22(6) (2021) - [j2]Florian Borchert, Andreas Mock, Aurelie Tomczak, Jonas Hügel, Samer Alkarkoukly, Alexander Knurr, Anna-Lena Volckmar, Albrecht Stenzinger, Peter Schirmacher, Jürgen Debus, Dirk Jäger, Thomas Longerich, Stefan Fröhling, Roland Eils, Nina Bougatf, Ulrich Sax, Matthieu-P. Schapranow:
Knowledge bases and software support for variant interpretation in precision oncology. Briefings Bioinform. 22(6) (2021) - 2012
- [j1]Matthieu-P. Schapranow, Jürgen Müller, Alexander Zeier, Hasso Plattner:
Costs of authentic pharmaceuticals: research on qualitative and quantitative aspects of enabling anti-counterfeiting in RFID-aided supply chains. Pers. Ubiquitous Comput. 16(3): 271-289 (2012)
Conference and Workshop Papers
- 2023
- [c32]Ignacio Llorca, Florian Borchert, Matthieu-P. Schapranow:
A Meta-dataset of German Medical Corpora: Harmonization of Annotations and Cross-corpus NER Evaluation. ClinicalNLP@ACL 2023: 171-181 - [c31]Sandro Steinwand, Florian Borchert, Silvia Winkler, Matthieu-P. Schapranow:
GGTWEAK: Gene Tagging with Weak Supervision for German Clinical Text. AIME 2023: 183-192 - [c30]Niklas Kammer, Florian Borchert, Silvia Winkler, Gerard de Melo, Matthieu-P. Schapranow:
Resolving Elliptical Compounds in German Medical Text. BioNLP@ACL 2023: 292-305 - [c29]Florian Borchert, Ignacio Llorca, Matthieu-P. Schapranow:
Cross-Lingual Candidate Retrieval and Re-ranking for Biomedical Entity Linking. CLEF 2023: 135-147 - 2022
- [c28]Florian Borchert, Matthieu-P. Schapranow:
HPI-DHC @ BioASQ DisTEMIST: Spanish Biomedical Entity Linking with Pre-trained Transformers and Cross-lingual Candidate Retrieval. CLEF (Working Notes) 2022: 244-258 - [c27]Florian Borchert, Christina Lohr, Luise Modersohn, Jonas Witt, Thomas Langer, Markus Follmann, Matthias Gietzelt, Bert Arnrich, Udo Hahn, Matthieu-P. Schapranow:
GGPONC 2.0 - The German Clinical Guideline Corpus for Oncology: Curation Workflow, Annotation Policy, Baseline NER Taggers. LREC 2022: 3650-3660 - 2021
- [c26]Florian Borchert, Laura Meister, Thomas Langer, Markus Follmann, Bert Arnrich, Matthieu-P. Schapranow:
Controversial Trials First: Identifying Disagreement Between Clinical Guidelines and New Evidence. AMIA 2021 - [c25]Aadil Rasheed, Florian Borchert, Lasse Kohlmeyer, Richard Henkenjohann, Matthieu-P. Schapranow:
A Comparison of Concept Embeddings for German Clinical Corpora. BIBM 2021: 2314-2321 - [c24]Richard Henkenjohann, Benjamin Bergner, Florian Borchert, Nina Bougatf, Hauke Hund, Roland Eils, Matthieu-P. Schapranow:
An Engineering Approach Towards Multi-site Virtual Molecular Tumor Board Software. IHAW 2021: 156-170 - 2020
- [c23]Florian Borchert, Christina Lohr, Luise Modersohn, Thomas Langer, Markus Follmann, Jan-Philipp Sachs, Udo Hahn, Matthieu-P. Schapranow:
GGPONC: A Corpus of German Medical Text with Rich Metadata Based on Clinical Practice Guidelines. LOUHI@EMNLP 2020: 38-48 - 2019
- [c22]Harry Freitas Da Cruz, Boris Pfahringer, Frederic Schneider, Alexander Meyer, Matthieu-P. Schapranow:
External Validation of a "Black-Box" Clinical Predictive Model in Nephrology: Can Interpretability Methods Help Illuminate Performance Differences? AIME 2019: 191-201 - [c21]Harry Freitas Da Cruz, Benjamin Bergner, Orhan Konak, Frederic Schneider, Philipp Bode, Conrad Lempert, Matthieu-P. Schapranow:
MORPHER - A Platform to Support Modeling of Outcome and Risk Prediction in Health Research. BIBE 2019: 462-469 - [c20]Harry Freitas Da Cruz, Frederic Schneider, Matthieu-P. Schapranow:
Prediction of Acute Kidney Injury in Cardiac Surgery Patients: Interpretation using Local Interpretable Model-agnostic Explanations. HEALTHINF 2019: 380-387 - [c19]Orhan Konak, Harry Freitas Da Cruz, Marvin Thiele, David Golla, Matthieu-P. Schapranow:
An Information and Communication Platform Supporting Analytics for Elderly Care. ICT4AWE 2019: 197-204 - [c18]Tamara Slosarek, Milena Kraus, Matthieu-P. Schapranow, Erwin P. Böttinger:
Qualitative Comparison of Selected Indel Detection Methods for RNA-Seq Data. IWBBIO (1) 2019: 166-177 - 2018
- [c17]Milena Kraus, Guenter Hesse, Tamara Slosarek, Marius Danner, Ajay Kesar, Akshay Bhushan, Matthieu-P. Schapranow:
DEAME - Differential Expression Analysis Made Easy. Poly/DMAH@VLDB 2018: 162-174 - 2016
- [c16]Matthieu-P. Schapranow, Milena Kraus, Marius Danner, Hasso Plattner:
IMDBfs: Bridging the gap between in-memory database technology and file-based tools for life sciences. BIBM 2016: 1133-1139 - [c15]Matthieu-P. Schapranow, Matthias Uflacker, Murat Sariyar, Sebastian C. Semler, Johannes Klaus Fichte, Dietmar Schielke, Kismet Ekinci, Thomas Zahn:
Towards an integrated health research process: A cloud-based approach. IEEE BigData 2016: 2813-2818 - 2015
- [c14]Matthieu-P. Schapranow, Milena Kraus, Cindy Perscheid, Cornelius Bock, Franz Liedke, Hasso Plattner:
The Medical Knowledge Cockpit: Real-time analysis of big medical data enabling precision medicine. BIBM 2015: 770-775 - [c13]Matthieu-P. Schapranow, Cindy Perscheid, Alf Wachsmann, Martin Siegert, Cornelius Bock, Friedrich Horschig, Franz Liedke, Janos Brauer, Hasso Plattner:
A Federated In-memory Database System for Life Sciences. BIRTE (Revised Selected Papers) 2015: 19-34 - [c12]Cindy Fähnrich, Matthieu-P. Schapranow, Hasso Plattner:
Facing the genome data deluge: efficiently identifying genetic variants with in-memory database technology. SAC 2015: 18-25 - 2014
- [c11]Cindy Fähnrich, Matthieu-P. Schapranow, Hasso Plattner:
Towards integrating the detection of genetic variants into an in-memory database. IEEE BigData 2014: 27-32 - [c10]Konrad Herbst, Cindy Fähnrich, Mariana L. Neves, Matthieu-P. Schapranow:
Applying In-Memory Technology for Automatic Template Filling in the Clinical Domain. CLEF (Working Notes) 2014: 91-102 - [c9]Matthieu-P. Schapranow, Konrad Klinghammer, Cindy Fähnrich, Hasso Plattner:
In-memory technology enables interactive drug response analysis. Healthcom 2014: 417-422 - 2013
- [c8]Matthieu-P. Schapranow, Hasso Plattner:
HIG - An in-memory database platform enabling real-time analyses of genome data. IEEE BigData 2013: 691-696 - 2011
- [c7]Matthieu-P. Schapranow, Alexander Zeier, Hasso Plattner:
Security Extensions for Improving Data Security of Event Repositories in EPCglobal Networks. EUC 2011: 213-220 - [c6]Matthieu-P. Schapranow, Alexander Zeier, Hasso Plattner:
A Formal Model for Enabling RFID in Pharmaceutical Supply Chains. HICSS 2011: 1-10 - 2010
- [c5]Matthieu-P. Schapranow, Jürgen Müller, Alexander Zeier, Hasso Plattner:
RFID Event Data Processing: An Architecture for Storing and Searching. IWRT 2010: 49-58 - [c4]Matthieu-P. Schapranow, Ralph Kühne, Alexander Zeier, Hasso Plattner:
Enabling real-time charging for smart grid infrastructures using in-memory databases. LCN 2010: 1040-1045 - [c3]Matthieu-P. Schapranow, Alexander Zeier, Hasso Plattner:
A Dynamic Mutual RFID Authentication Model Preventing Unauthorized Third Party Access. NSS 2010: 371-376 - 2009
- [c2]Vadym Borovskiy, Juergen Mueller, Matthieu-Patrick Schapranow, Alexander Zeier:
Ensuring service backwards compatibility with Generic Web Services. PESOS@ICSE 2009: 95-98 - [c1]Matthieu-P. Schapranow, Jens Krüger, Vadym Borovskiy, Alexander Zeier, Hasso Plattner:
Data Loading and Caching Strategies in Service-Oriented Enterprise Applications. SERVICES I 2009: 368-375
Editorship
- 2015
- [e1]Jun Huan, Satoru Miyano, Amarda Shehu, Xiaohua Tony Hu, Bin Ma, Sanguthevar Rajasekaran, Vijay K. Gombar, Matthieu-P. Schapranow, Illhoi Yoo, Jiayu Zhou, Brian Chen, Vinay Pai, Brian G. Pierce:
2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015, Washington, DC, USA, November 9-12, 2015. IEEE Computer Society 2015, ISBN 978-1-4673-6799-8 [contents]
Informal and Other Publications
- 2023
- [i2]Florian Borchert, Ignacio Llorca, Roland Roller, Bert Arnrich, Matthieu-P. Schapranow:
xMEN: A Modular Toolkit for Cross-Lingual Medical Entity Normalization. CoRR abs/2310.11275 (2023) - 2020
- [i1]Florian Borchert, Christina Lohr, Luise Modersohn, Thomas Langer, Markus Follmann, Jan-Philipp Sachs, Udo Hahn, Matthieu-P. Schapranow:
GGPONC: A Corpus of German Medical Text with Rich Metadata Based on Clinical Practice Guidelines. CoRR abs/2007.06400 (2020)
Coauthor Index
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last updated on 2024-09-10 01:17 CEST by the dblp team
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