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Publication search results
found 149 matches
- 2024
- Christopher J. Weir, Susan Hinder, Imad Adamestam, Rona Sharp, Holly Ennis, Andrew Heed, Robin Williams, Kathrin M. Cresswell, Omara Dogar, Sarah K. Pontefract, Jamie J. Coleman, Richard Lilford, Neil Watson, Ann Slee, Antony Chuter, Jillian Beggs, Sarah P. Slight, James Mason, David W. Bates, Aziz Sheikh:
A complex ePrescribing antimicrobial stewardship-based (ePAMS+) intervention for hospitals: mixed-methods feasibility trial results. BMC Medical Informatics Decis. Mak. 24(1): 301 (2024) - Jeffery L. Painter, Venkateswara Rao Chalamalasetti, Raymond Kassekert, Andrew Bate:
Bridging the Gap in Drug Safety Data Analysis: Large Language Models for SQL Query Generation. CoRR abs/2406.10690 (2024) - Joe B. Hakim, Jeffery L. Painter, Darmendra Ramcharran, Vijay Kara, Greg Powell, Paulina Sobczak, Chiho Sato, Andrew Bate, Andrew Beam:
The Need for Guardrails with Large Language Models in Medical Safety-Critical Settings: An Artificial Intelligence Application in the Pharmacovigilance Ecosystem. CoRR abs/2407.18322 (2024) - 2023
- Elisabeth Coudert, Sebastien Gehant, Edouard De Castro, Monica Pozzato, Delphine Baratin, Teresa Batista Neto, Christian J. A. Sigrist, Nicole Redaschi, Alan J. Bridge, Lucila Aimo, Ghislaine Argoud-Puy, Andrea H. Auchincloss, Kristian B. Axelsen, Parit Bansal, Marie-Claude Blatter, Jerven T. Bolleman, Emmanuel Boutet, Lionel Breuza, Blanca Cabrera Gil, Cristina Casals-Casas, Kamal Chikh Echioukh, Béatrice A. Cuche, Anne Estreicher, Maria Livia Famiglietti, Marc Feuermann, Elisabeth Gasteiger, Pascale Gaudet, Vivienne Baillie Gerritsen, Arnaud Gos, Nadine Gruaz-Gumowski, Chantal Hulo, Nevila Hyka-Nouspikel, Florence Jungo, Arnaud Kerhornou, Philippe Le Mercier, Damien Lieberherr, Patrick Masson, Anne Morgat, Venkatesh Muthukrishnan, Salvo Paesano, Ivo Pedruzzi, Sandrine Pilbout, Lucille Pourcel, Sylvain Poux, Manuela Pruess, Catherine Rivoire, Karin Sonesson, Shyamala Sundaram, Alex Bateman, Maria Jesus Martin, Sandra E. Orchard, Michele Magrane, Shadab Ahmad, Emanuele Alpi, Emily H. Bowler-Barnett, Ramona Britto, Hema Bye-A-Jee, Austra Cukura, Paul Denny, Tunca Dogan, Thankgod Ebenezer, Jun Fan, Penelope Garmiri, Leonardo Jose da Costa Gonzales, Emma Hatton-Ellis, Abdulrahman Hussein, Alexandr Ignatchenko, Giuseppe Insana, Rizwan Ishtiaq, Vishal Joshi, Dushyanth Jyothi, Swaathi Kandasamy, Antonia Lock, Aurelien Luciani, Marija Lugaric, Jie Luo, Yvonne Lussi, Alistair MacDougall, Fábio Madeira, Mahdi Mahmoudy, Alok Mishra, Katie Moulang, Andrew Nightingale, Sangya Pundir, Guoying Qi, Shriya Raj, Pedro Raposo, Daniel Rice, Rabie Saidi, Rafael Santos, Elena Speretta, James D. Stephenson, Prabhat Totoo, Edward Turner, Nidhi Tyagi, Preethi Vasudev, Kate Warner, Xavier Watkins, Rossana Zaru, Hermann Zellner, Cathy H. Wu, Cecilia N. Arighi, Leslie Arminski, Chuming Chen, Yongxing Chen, Hongzhan Huang, Kati Laiho, Peter B. McGarvey, Darren A. Natale, Karen Ross, C. R. Vinayaka, Qinghua Wang, Yuqi Wang:
Annotation of biologically relevant ligands in UniProtKB using ChEBI. Bioinform. 39(1) (2023) - Chih-Chieh Liu, Yasser G. Abdelhafez, S. Paran Yap, Francesco Acquafredda, Silvia Schirò, Andrew L. Wong, Dani Sarohia, Cyrus Bateni, Morgan Angus Darrow, Michele Guindani, Sonia Lee, Michelle Zhang, Ahmed W. Moawad, Quinn Kwan-Tai Ng, Layla Shere, Khaled M. Elsayes, Roberto Maroldi, Thomas M. Link, Lorenzo Nardo, Jinyi Qi:
AI-Based Automated Lipomatous Tumor Segmentation in MR Images: Ensemble Solution to Heterogeneous Data. J. Digit. Imaging 36(3): 1049-1059 (2023) - Matthew Thakur, Alex Bateman, Cath Brooksbank, Mallory Ann Freeberg, Melissa Harrison, Matthew Hartley, Thomas M. Keane, Gerard J. Kleywegt, Andrew Leach, Maria Levchenko, Sarah L. Morgan, Ellen M. McDonagh, Sandra E. Orchard, Irene Papatheodorou, Sameer Velankar, Juan Antonio Vizcaíno, Rick Witham, Barbara Zdrazil, Johanna R. McEntyre:
EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022. Nucleic Acids Res. 51(D1): 9-17 (2023) - Loïc Lannelongue, Hans-Erik G. Aronson, Alex Bateman, Ewan Birney, Talia Caplan, Martin Juckes, Johanna R. McEntyre, Andrew D. Morris, Gerry Reilly, Michael Inouye:
GREENER principles for environmentally sustainable computational science. Nat. Comput. Sci. 3(6): 514-521 (2023) - Gabriel Girard, Jonathan Rafael-Patino, Raphaël Truffet, Dogu Baran Aydogan, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Sara Bosticardo, Ilaria Gabusi, Mario Ocampo-Pineda, Matteo Battocchio, Zuzana Piskorova, Pietro Bontempi, Simona Schiavi, Alessandro Daducci, Aleksandra Stafiej, Dominika Ciupek, Fabian Bogusz, Tomasz Pieciak, Matteo Frigo, Sara Sedlar, Samuel Deslauriers-Gauthier, Ivana Kojcic, Mauro Zucchelli, Hiba Laghrissi, Yang Ji, Rachid Deriche, Kurt G. Schilling, Bennett A. Landman, Alberto Cacciola, Gianpaolo Antonio Basile, Salvatore Bertino, Nancy Newlin, Praitayini Kanakaraj, Francois Rheault, Patryk Filipiak, Timothy M. Shepherd, Ying-Chia Lin, Dimitris G. Placantonakis, Fernando E. Boada, Steven H. Baete, Erick Hernandez-Gutierrez, Alonso Ramirez-Manzanares, Ricardo Coronado-Leija, Pablo Stack-Sánchez, Luis Concha, Maxime Descoteaux, Sina Mansour L, Caio Seguin, Andrew Zalesky, Kenji Marshall, Erick Jorge Canales-Rodríguez, Ye Wu, Sahar Ahmad, Pew-Thian Yap, Antoine Théberge, Florence Gagnon, Frédéric Massi, Elda Fischi Gomez, Remy Gardier, Juan Luis Villarreal-Haro, Marco Pizzolato, Emmanuel Caruyer, Jean-Philippe Thiran:
Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge. NeuroImage 277: 120231 (2023) - Konrad Pieszko, Aakash D. Shanbhag, Ananya Singh, M. Timothy Hauser, Robert J. H. Miller, Joanna X. Liang, Manish Motwani, Jacek Kwiecinski, Tali Sharir, Andrew J. Einstein, Mathews Fish, Terrence D. Ruddy, Philipp A. Kaufmann, Albert J. Sinusas, Edward J. Miller, Timothy M. Bateman, Sharmila Dorbala, Marcelo Di Carli, Daniel S. Berman, Damini Dey, Piotr J. Slomka:
Time and event-specific deep learning for personalized risk assessment after cardiac perfusion imaging. npj Digit. Medicine 6 (2023) - Otilia Stretcu, Edward Vendrow, Kenji Hata, Krishnamurthy Viswanathan, Vittorio Ferrari, Sasan Tavakkol, Wenlei Zhou, Aditya Avinash, Enming Luo, Neil Gordon Alldrin, MohammadHossein Bateni, Gabriel Berger, Andrew Bunner, Chun-Ta Lu, Javier A Rey, Giulia DeSalvo, Ranjay Krishna, Ariel Fuxman:
Agile Modeling: From Concept to Classifier in Minutes. ICCV 2023: 22266-22277 - Andrew S. Morgan, Quentin Bateux, Mei Hao, Aaron M. Dollar:
Towards Generalized Robot Assembly through Compliance-Enabled Contact Formations. ICRA 2023: 8010-8016 - Otilia Stretcu, Edward Vendrow, Kenji Hata, Krishnamurthy Viswanathan, Vittorio Ferrari, Sasan Tavakkol, Wenlei Zhou, Aditya Avinash, Enming Luo, Neil Gordon Alldrin, MohammadHossein Bateni, Gabriel Berger, Andrew Bunner, Chun-Ta Lu, Javier A Rey, Ariel Fuxman:
Agile Modeling: Image Classification with Domain Experts in the Loop. CoRR abs/2302.12948 (2023) - Andrew S. Morgan, Quentin Bateux, Mei Hao, Aaron M. Dollar:
Towards Generalized Robot Assembly through Compliance-Enabled Contact Formations. CoRR abs/2303.05565 (2023) - Andrew Green, Carlos Eduardo Ribas, Nancy Ontiveros-Palacios, Anton I. Petrov, Alex Bateman, Blake A. Sweeney:
LitSumm: Large language models for literature summarisation of non-coding RNAs. CoRR abs/2311.03056 (2023) - 2022
- Richard Ríos, Robert J. H. Miller, Nipun Manral, Tali Sharir, Andrew J. Einstein, Mathews Fish, Terrence D. Ruddy, Philipp A. Kaufmann, Albert J. Sinusas, Edward J. Miller, Timothy M. Bateman, Sharmila Dorbala, Marcelo Di Carli, Serge D. Van Kriekinge, Paul Kavanagh, Tejas Parekh, Joanna X. Liang, Damini Dey, Daniel S. Berman, Piotr J. Slomka:
Handling missing values in machine learning to predict patient-specific risk of adverse cardiac events: Insights from REFINE SPECT registry. Comput. Biol. Medicine 145: 105449 (2022) - Andrew J. Chadwick, Nicholas C. Coops, Christopher W. Bater, Lee A. Martens, Barry White:
Species Classification of Automatically Delineated Regenerating Conifer Crowns Using RGB and Near-Infrared UAV Imagery. IEEE Geosci. Remote. Sens. Lett. 19: 1-5 (2022) - Chiara Maffei, Gabriel Girard, Kurt G. Schilling, Dogu Baran Aydogan, Nagesh Adluru, Andrey Zhylka, Ye Wu, Matteo Mancini, Andac Hamamci, Alessia Sarica, Achille Teillac, Steven H. Baete, Davood Karimi, Fang-Cheng Yeh, Mert E. Yildiz, Ali Gholipour, Yann Bihan-Poudec, Bassem Hiba, Andrea Quattrone, Aldo Quattrone, Tommy Boshkovski, Nikola Stikov, Pew-Thian Yap, Alberto De Luca, Josien P. W. Pluim, Alexander Leemans, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Bennett A. Landman, Erick Jorge Canales-Rodríguez, Muhamed Barakovic, Jonathan Rafael-Patino, Thomas Yu, Gaëtan Rensonnet, Simona Schiavi, Alessandro Daducci, Marco Pizzolato, Elda Fischi Gomez, Jean-Philippe Thiran, George Dai, Giorgia Grisot, Nikola Lazovski, Santi Puch, Marc Ramos, Paulo Rodrigues, Vesna Prckovska, Robert Jones, Julia Lehman, Suzanne N. Haber, Anastasia Yendiki:
Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI. NeuroImage 257: 119327 (2022) - Cristian Rossi, Luke Bateson, Maral Bayaraa, Andrew Butcher, Jonathan Ford, Andrew Hughes:
Framework for Remote Sensing and Modelling of Lithium-Brine Deposit Formation. Remote. Sens. 14(6): 1383 (2022) - Jeffery L. Painter, Laurie Girard, Michael Glaser, Andrew Bate:
Leveraging Data Pathways for Next Generation Safety Monitoring of Medicines and Vaccines. CSCI 2022: 1570-1576 - Jennie Rogers, Elizabeth Adetoro, Johes Bater, Talia Canter, Dong Fu, Andrew Hamilton, Amro Hassan, Ashley Martinez, Erick Michalski, Vesna Mitrovic, Fred D. Rachman, Raj C. Shah, Matt Sterling, Kyra VanDoren, Theresa L. Walunas, Xiao Wang, Abel N. Kho:
VaultDB: A Real-World Pilot of Secure Multi-Party Computation within a Clinical Research Network. CoRR abs/2203.00146 (2022) - 2021
- Alex Bateman, Maria Jesus Martin, Sandra E. Orchard, Michele Magrane, Rahat Agivetova, Shadab Ahmad, Emanuele Alpi, Emily H. Bowler-Barnett, Ramona Britto, Borisas Bursteinas, Hema Bye-A-Jee, Ray Coetzee, Austra Cukura, Alan W. Sousa da Silva, Paul Denny, Tunca Dogan, Thankgod Ebenezer, Jun Fan, Leyla Jael García Castro, Penelope Garmiri, George E. Georghiou, Leonardo Gonzales, Emma Hatton-Ellis, Abdulrahman Hussein, Alexandr Ignatchenko, Giuseppe Insana, Rizwan Ishtiaq, Petteri Jokinen, Vishal Joshi, Dushyanth Jyothi, Antonia Lock, Rodrigo Lopez, Aurelien Luciani, Jie Luo, Yvonne Lussi, Alistair MacDougall, Fábio Madeira, Mahdi Mahmoudy, Manuela Menchi, Alok Mishra, Katie Moulang, Andrew Nightingale, Carla Susana Oliveira, Sangya Pundir, Guoying Qi, Shriya Raj, Daniel Rice, Milagros Rodríguez-López, Rabie Saidi, Joseph Sampson, Tony Sawford, Elena Speretta, Edward Turner, Nidhi Tyagi, Preethi Vasudev, Vladimir Volynkin, Kate Warner, Xavier Watkins, Rossana Zaru, Hermann Zellner, Alan J. Bridge, Sylvain Poux, Nicole Redaschi, Lucila Aimo, Ghislaine Argoud-Puy, Andrea H. Auchincloss, Kristian B. Axelsen, Parit Bansal, Delphine Baratin, Marie-Claude Blatter, Jerven T. Bolleman, Emmanuel Boutet, Lionel Breuza, Cristina Casals-Casas, Edouard De Castro, Kamal Chikh Echioukh, Elisabeth Coudert, Béatrice A. Cuche, Mikael Doche, Dolnide Dornevil, Anne Estreicher, Maria Livia Famiglietti, Marc Feuermann, Elisabeth Gasteiger, Sebastien Gehant, Vivienne Baillie Gerritsen, Arnaud Gos, Nadine Gruaz-Gumowski, Ursula Hinz, Chantal Hulo, Nevila Hyka-Nouspikel, Florence Jungo, Guillaume Keller, Arnaud Kerhornou, Vicente Lara, Philippe Le Mercier, Damien Lieberherr, Thierry Lombardot, Xavier Martin, Patrick Masson, Anne Morgat, Teresa Batista Neto, Salvo Paesano, Ivo Pedruzzi, Sandrine Pilbout, Lucille Pourcel, Monica Pozzato, Manuela Pruess, Catherine Rivoire, Christian J. A. Sigrist, Karin Sonesson, Andre Stutz, Shyamala Sundaram, Michael Tognolli, Laure Verbregue, Cathy H. Wu, Cecilia N. Arighi, Leslie Arminski, Chuming Chen, Yongxing Chen, John S. Garavelli, Hongzhan Huang, Kati Laiho, Peter B. McGarvey, Darren A. Natale, Karen Ross, C. R. Vinayaka, Qinghua Wang, Yuqi Wang, Lai-Su Yeh, Jian Zhang, Patrick Ruch, Douglas Teodoro:
UniProt: the universal protein knowledgebase in 2021. Nucleic Acids Res. 49(Database-Issue): D480-D489 (2021) - 2020
- Rachel Drysdale, Charles E. Cook, Robert Petryszak, Vivienne Baillie Gerritsen, Mary Barlow, Elisabeth Gasteiger, Franziska Gruhl, Jürgen Haas, Jerry Lanfear, Rodrigo Lopez, Nicole Redaschi, Heinz Stockinger, Daniel Teixeira, Aravind Venkatesan, Alex Bateman, Alan J. Bridge, Guy Cochrane, Robert D. Finn, Frank Oliver Glöckner, Marc Hanauer, Thomas M. Keane, Andrew Leach, Luana Licata, Per Oksvold, Sandra E. Orchard, Christine A. Orengo, Helen E. Parkinson, Bengt Persson, Pablo Porras, Jordi Rambla, Ana Rath, Charlotte Rodwell, Ugis Sarkans, Dietmar Schomburg, Ian Sillitoe, J. Dylan Spalding, Mathias Uhlén, Sameer Velankar, Juan Antonio Vizcaíno, Kalle von Feilitzen, Christian von Mering, Andrew D. Yates, Niklas Blomberg, Christine Durinx, Johanna R. McEntyre:
The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. Bioinform. 36(8): 2636-2642 (2020) - Jeison Sosa, Chris Sampson, Andrew Smith, Jeffrey C. Neal, Paul D. Bates:
A toolbox to quickly prepare flood inundation models for LISFLOOD-FP simulations. Environ. Model. Softw. 123 (2020) - Stuart Mumford, Nabil Freij, Steven Christe, Jack Ireland, Florian Mayer, V. Keith Hughitt, Albert J. Shih, Daniel Ryan, Simon Liedtke, David Pérez-Suárez, Pritish Chakraborty, Vishnunarayan K, Andrew Inglis, Punyaslok Pattnaik, Brigitta M. Sipocz, Rishabh Sharma, Andrew Leonard, David Stansby, Russell J. Hewett, Alex Hamilton, Laura Hayes, Asish Panda, Matt Earnshaw, Nitin Choudhary, Ankit Kumar, Prateek Chanda, Md. Akramul Haque, Michael Kirk, Michael Mueller, Sudarshan Konge, Rajul Srivastava, Yash Jain, Samuel Bennett, Ankit Baruah, Will T. Barnes, Michael Charlton, Shane A. Maloney, Nicky Chorley, Himanshu, Sanskar Modi, James Mason, Jose Rozo, Larry Manley, Agneet Chatterjee, John Evans, Michael Malocha, Monica G. Bobra, Sourav Ghosh, Dominik Stanczak, Ruben De Visscher, Shresth Verma, Ankit Agrawal, Dumindu Buddhika, Swapnil Sharma, Jongyeob Park, Matt Bates, Dhruv Goel, Garrison Taylor, Goran Cetusic, Jacob, Mateo Inchaurrandieta, Sally Dacie, Sanjeev Dubey, Deepankar Sharma, Erik Bray, Jai Rideout, Serge Zahniy, Tomas Meszaros, Abhigyan Bose, André Chicrala, Ankit, Chloé Guennou, Daniel D'avella, Daniel Williams, Jordan Ballew, Nick Murphy, Priyank Lodha, Thomas Robitaille, Yash Krishan, Andrew Hill, Arthur Eigenbrot, Benjamin Mampaey, Bernhard Wiedemann, Carlos Molina, Duygu Keskek, Ishtyaq Habib, Joseph Letts, Juanjo Bazán, Quinn Arbolante, Reid Gomillion, Yash Kothari, Yash Sharma, Abigail Stevens, Adrian M. Price-Whelan, Ambar Mehrotra, Arseniy Kustov, Brandon Stone, Trung Dang, Emmanuel Arias, Fionnlagh Dover, Freek Verstringe, Gulshan Kumar, Harsh Mathur, Igor Babuschkin, Jaylen Wimbish, Juan Buitrago-Casas, Kalpesh Krishna, Kaustubh Hiware, Manas Mangaonkar, Matthew Mendero, Mickaël Schoentgen, Norbert Gyenge, Ole Streicher, Rajasekhar Mekala, Rishabh Mishra, Shashank Srikanth, Sarthak Jain, Tannmay Yadav, Tessa Wilkinson, Tiago Pereira, Yudhik Agrawal, Jamescalixto, Yasintoda, Sophie Murray:
SunPy: A Python package for Solar Physics. J. Open Source Softw. 5(46): 1832 (2020) - Andrew J. Chadwick, Tristan R. H. Goodbody, Nicholas C. Coops, Anne Hervieux, Christopher W. Bater, Lee A. Martens, Barry White, Dominik Röeser:
Automatic Delineation and Height Measurement of Regenerating Conifer Crowns under Leaf-Off Conditions Using UAV Imagery. Remote. Sens. 12(24): 4104 (2020) - Riccardo Paccagnella, Pubali Datta, Wajih Ul Hassan, Adam Bates, Christopher W. Fletcher, Andrew Miller, Dave Tian:
Custos: Practical Tamper-Evident Auditing of Operating Systems Using Trusted Execution. NDSS 2020 - 2019
- Jo Bates, Paula Goodale, Yuwei Lin, Penny Andrews:
Assembling an infrastructure for historic climate data recovery: data friction in practice. J. Documentation 75(4): 791-806 (2019) - Brandy Maki, Rebecca Bates, Andrew Hanegmon, Jennifer Karlin, Cody Mann, Ron Ulseth:
Just Deserts: Engineering for All, Everywhere. FIE 2019: 1-3 - 2018
- Jeffrey C. Neal, Toby Dunne, Chris Sampson, Andrew Smith, Paul D. Bates:
Optimisation of the two-dimensional hydraulic model LISFOOD-FP for CPU architecture. Environ. Model. Softw. 107: 148-157 (2018) - Andrew Bate, Boris Motik, Bernardo Cuenca Grau, David Tena Cucala, Frantisek Simancik, Ian Horrocks:
Consequence-Based Reasoning for Description Logics with Disjunctions and Number Restrictions. J. Artif. Intell. Res. 63: 625-690 (2018)
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