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Journal Articles
- 2019
[j20]Matthew Shardlow, Meizhi Ju, Maolin Li, Christian O'Reilly
, Elisabetta Iavarone, John McNaught, Sophia Ananiadou:
A Text Mining Pipeline Using Active and Deep Learning Aimed at Curating Information in Computational Neuroscience. Neuroinformatics 17(3): 391-406 (2019)- 2018
- [j19]Hana Almagrabi, Areej Malibari, John McNaught:
Corpus Analysis and Annotation for Helpful Sentences in Product Reviews. Comput. Inf. Sci. 11(2): 76-87 (2018) - [j18]Matthew Shardlow, Riza Batista-Navarro, Paul Thompson, Raheel Nawaz, John McNaught, Sophia Ananiadou:
Identification of research hypotheses and new knowledge from scientific literature. BMC Medical Informatics Decis. Mak. 18(1): 46:1-46:13 (2018) - 2017
- [j17]Georgios Kontonatsios, Austin J. Brockmeier, Piotr Przybyla, John McNaught, Tingting Mu, John Yannis Goulermas, Sophia Ananiadou:
A semi-supervised approach using label propagation to support citation screening. J. Biomed. Informatics 72: 67-76 (2017) - [j16]Paul Thompson, Raheel Nawaz, John McNaught, Sophia Ananiadou:
Enriching news events with meta-knowledge information. Lang. Resour. Evaluation 51(2): 409-438 (2017) - 2016
- [j15]Piotr Przybyla, Matthew Shardlow, Sophie Aubin, Robert Bossy, Richard Eckart de Castilho, Stelios Piperidis, John McNaught, Sophia Ananiadou:
Text mining resources for the life sciences. Database J. Biol. Databases Curation 2016 (2016) - [j14]Georg Rehm, Hans Uszkoreit, Sophia Ananiadou, Núria Bel, Audroné Bieleviciené, Lars Borin, António Branco, Gerhard Budin, Nicoletta Calzolari, Walter Daelemans, Radovan Garabík, Marko Grobelnik, Carmen García-Mateo, Josef van Genabith, Jan Hajic, Inma Hernáez, John Judge, Svetla Koeva, Simon Krek, Cvetana Krstev, Krister Lindén, Bernardo Magnini, Joseph Mariani, John McNaught, Maite Melero, Monica Monachini, Asunción Moreno, Jan Odijk, Maciej Ogrodniczuk, Piotr Pezik, Stelios Piperidis, Adam Przepiórkowski, Eiríkur Rögnvaldsson, Mike Rosner, Bolette Sandford Pedersen, Inguna Skadina, Koenraad De Smedt, Marko Tadic, Paul Thompson, Dan Tufis, Tamás Váradi, Andrejs Vasiljevs, Kadri Vider, Jolanta Zabarskaite:
The strategic impact of META-NET on the regional, national and international level. Lang. Resour. Evaluation 50(2): 351-374 (2016) - 2014
- [j13]Alistair G. Sutcliffe, Oscar de Bruijn, Sarah Thew, Iain E. Buchan, Paul Jarvis, John McNaught, Rob Procter:
Developing visualization-based decision support tools for epidemiology. Inf. Vis. 13(1): 3-17 (2014) - 2012
- [j12]Makoto Miwa, Paul Thompson, John McNaught, Douglas B. Kell, Sophia Ananiadou:
Extracting semantically enriched events from biomedical literature. BMC Bioinform. 13: 108 (2012) - 2011
- [j11]Paul Thompson, Raheel Nawaz, John McNaught, Sophia Ananiadou:
Enriching a biomedical event corpus with meta-knowledge annotation. BMC Bioinform. 12: 393 (2011) - [j10]Paul Thompson, John McNaught, Simonetta Montemagni, Nicoletta Calzolari, Riccardo Del Gratta, Vivian Lee, Simone Marchi, Monica Monachini, Piotr Pezik, Valeria Quochi, C. J. Rupp, Yutaka Sasaki, Giulia Venturi, Dietrich Rebholz-Schuhmann, Sophia Ananiadou:
The BioLexicon: a large-scale terminological resource for biomedical text mining. BMC Bioinform. 12: 397 (2011) - [j9]Johanna R. McEntyre, Sophia Ananiadou, Stephen Andrews, William J. Black, Richard Boulderstone, Paula Buttery, David Chaplin, Sandeepreddy Chevuru, Norman Cobley, Lee-Ann Coleman, Paul Davey, Bharti Gupta, Lesley Haji-Gholam, Craig Hawkins, Alan Horne, Simon J. Hubbard, Jee-Hyub Kim, Ian Lewin, Vic Lyte, Ross MacIntyre, Sami Mansoor, Linda Mason, John McNaught, Elizabeth Newbold, Chikashi Nobata, Ernest Ong, Sharmila Pillai, Dietrich Rebholz-Schuhmann, Heather Rosie, Rob Rowbotham, C. J. Rupp, Peter Stoehr, Philip Vaughan:
UKPMC: a full text article resource for the life sciences. Nucleic Acids Res. 39(Database-Issue): 58-65 (2011) - 2010
- [j8]Yutaka Sasaki, John McNaught, Sophia Ananiadou:
The Value of an in-Domain Lexicon in genomics QA. J. Bioinform. Comput. Biol. 8(1): 147-161 (2010) - 2009
- [j7]Paul Thompson, Syed A. Iqbal, John McNaught, Sophia Ananiadou:
Construction of an annotated corpus to support biomedical information extraction. BMC Bioinform. 10: 349 (2009) - [j6]Sarah Thew, Alistair G. Sutcliffe, Rob Procter, Oscar de Bruijn, John McNaught, Colin C. Venters, Iain E. Buchan:
Requirements Engineering for E-science: Experiences in Epidemiology. IEEE Softw. 26(1): 80-87 (2009) - 2008
- [j5]Yutaka Sasaki, Yoshimasa Tsuruoka, John McNaught, Sophia Ananiadou:
How to make the most of NE dictionaries in statistical NER. BMC Bioinform. 9(S-11) (2008) - [j4]Yoshimasa Tsuruoka, John McNaught, Sophia Ananiadou:
Normalizing biomedical terms by minimizing ambiguity and variability. BMC Bioinform. 9(S-3) (2008) - 2007
- [j3]Yoshimasa Tsuruoka, John McNaught, Jun'ichi Tsujii, Sophia Ananiadou:
Learning string similarity measures for gene/protein name dictionary look-up using logistic regression. Bioinform. 23(20): 2768-2774 (2007) - 2005
- [j2]Irena Spasic, Sophia Ananiadou, John McNaught, Anand Kumar:
Text mining and ontologies in biomedicine: Making sense of raw text. Briefings Bioinform. 6(3): 239-251 (2005) - 2004
- [j1]Eugenia Eumeridou, Blaise Nkwenti-Azeh, John McNaught:
An Analysis of Verb Subcategorization Frames in Three Special Language Corpora with a View towards Automatic Term Recognition. Comput. Humanit. 38(1): 37-60 (2004)
Conference and Workshop Papers
- 2018
- [c34]Matthew Shardlow, Nhung T. H. Nguyen, Gareth I. Owen, Claire O'Donovan, Andrew Leach, John McNaught, Steve Turner, Sophia Ananiadou:
A New Corpus to Support Text Mining for the Curation of Metabolites in the ChEBI Database. LREC 2018 - 2015
- [c33]Paul Thompson, John McNaught, Sophia Ananiadou:
Customised OCR correction for historical medical text. DigitalHERITAGE (1) 2015: 35-42 - [c32]Paul Thompson, Jacob Carter, John McNaught, Sophia Ananiadou:
Semantically enhanced search system for historical medical archives. Digital Heritage 2015: 387-390 - [c31]Shabib AlGahtani, John McNaught:
Joint Arabic Segmentation and Part-Of-Speech Tagging. ANLP@ACL 2015: 108-117 - 2014
- [c30]Georg Rehm, Hans Uszkoreit, Sophia Ananiadou, Núria Bel, Audroné Bieleviciené, Lars Borin, António Branco, Gerhard Budin, Nicoletta Calzolari, Walter Daelemans, Radovan Garabík, Marko Grobelnik, Carmen García-Mateo, Josef van Genabith, Jan Hajic, Inma Hernáez, John Judge, Svetla Koeva, Simon Krek, Cvetana Krstev, Krister Lindén, Bernardo Magnini, Joseph Mariani, John McNaught, Maite Melero, Monica Monachini, Asunción Moreno, Jan Odijk, Maciej Ogrodniczuk, Piotr Pezik, Stelios Piperidis, Adam Przepiórkowski, Eiríkur Rögnvaldsson, Michael Rosner, Bolette S. Pedersen, Inguna Skadina, Koenraad De Smedt, Marko Tadic, Paul Thompson, Dan Tufis, Tamás Váradi, Andrejs Vasiljevs, Kadri Vider, Jolanta Zabarskaite:
The Strategic Impact of META-NET on the Regional, National and International Level. LREC 2014: 1517-1524 - 2013
- [c29]Paul Thompson, Raheel Nawaz, Ioannis Korkontzelos, William J. Black, John McNaught, Sophia Ananiadou:
News search using discourse analytics. Digital Heritage (1) 2013: 597-604 - 2011
- [c28]Paul Thompson, Yoshinobu Kano, John McNaught, Steve Pettifer, Teresa K. Attwood, John A. Keane, Sophia Ananiadou:
Promoting Interoperability of Resources in META-SHARE. Workshop on Language Resources@IJCNLP 2011: 50-58 - 2010
- [c27]Sophia Ananiadou, John McNaught, James Thomas, Mark Rickinson, Sandy Oliver:
Evaluating a Text Mining Based Educational Search Portal. LREC 2010 - [c26]Raheel Nawaz, Paul Thompson, John McNaught, Sophia Ananiadou:
Meta-Knowledge Annotation of Bio-Events. LREC 2010 - 2009
- [c25]Giulia Venturi, Simonetta Montemagni, Simone Marchi, Yutaka Sasaki, Paul Thompson, John McNaught, Sophia Ananiadou:
Bootstrapping a Verb Lexicon for Biomedical Information Extraction. CICLing 2009: 137-148 - [c24]Yutaka Sasaki, Paul Thompson, John McNaught, Sophia Ananiadou:
Three BioNLP Tools Powered by a Biological Lexicon. EACL (Demos) 2009: 61-64 - [c23]Scott Piao, Brian Rea, John McNaught, Sophia Ananiadou:
Improving Full Text Search with Text Mining Tools. NLDB 2009: 301-302 - 2008
- [c22]Yutaka Sasaki, Yoshimasa Tsuruoka, John McNaught, Sophia Ananiadou:
How to Make the Most of NE Dictionaries in Statistical NER. BioNLP 2008: 63-70 - [c21]Yutaka Sasaki, Paul Thompson, Philip Cotter, John McNaught, Sophia Ananiadou:
Event Frame Extraction Based on a Gene Regulation Corpus. COLING 2008: 761-768 - [c20]Scott Piao, John McNaught, Sophia Ananiadou:
Clustering Related Terms with Definitions. LREC 2008 - [c19]Paul Thompson, Philip Cotter, John McNaught, Sophia Ananiadou, Simonetta Montemagni, Andrea Trabucco, Giulia Venturi:
Building a Bio-Event Annotated Corpus for the Acquisition of Semantic Frames from Biomedical Corpora. LREC 2008 - [c18]Sarah Thew, Alistair G. Sutcliffe, Oscar de Bruijn, John McNaught, Rob Procter, Colin C. Venters, Iain E. Buchan:
Experience in e-Science Requirements Engineering. RE 2008: 277-282 - 2007
- [c17]Udo Hahn, Ekaterina Buyko, Katrin Tomanek, Scott Piao, John McNaught, Yoshimasa Tsuruoka, Sophia Ananiadou:
An Annotation Type System for a Data-Driven NLP Pipeline. LAW@ACL 2007: 33-40 - 2005
- [c16]Yoshimasa Tsuruoka, Yuka Tateishi, Jin-Dong Kim, Tomoko Ohta, John McNaught, Sophia Ananiadou, Jun'ichi Tsujii:
Developing a Robust Part-of-Speech Tagger for Biomedical Text. Panhellenic Conference on Informatics 2005: 382-392 - 2004
- [c15]Goran Nenadic, Sophia Ananiadou, John McNaught:
Enhancing automatic term recognition through recognition of variation. COLING 2004 - [c14]Gerardo Sierra, John McNaught:
Serendipitous Wording of POS Tags to Extract Semantic Pairs of Words from Dictionary Definitions. International Conference on Computational Intelligence 2004: 113-116 - [c13]Gerardo Sierra, John McNaught:
Serendipitous Wording of POS Tags to Extract Semantic Pairs of Words from Dictionary Definitions. International Conference on Computational Intelligence 2004: 310-313 - [c12]Kalliopi Zervanou, John McNaught:
A Domain-Independent Approach to IE Rule Development. LREC 2004 - [c11]Myra Spiliopoulou, Roland M. Müller, Marko Brunzel, Fabio Rinaldi, Michael Hess, James Dowdall, William J. Black, Babis Theodoulidis, John McNaught, Luc Bernard, Gian Piero Zarri, Giorgos Orphanos, Maghi King, Andreas Persidis:
Coupling Information Extraction and Data Mining for Ontology Learning in PARMENIDES. RIAO 2004: 156-169 - [c10]William J. Black, Simon Jowett, Thomas Mavroudakis, John McNaught, Babis Theodoulidis, Argyrios Vasilakopoulos, Gian Piero Zarri, Kalliopi Zervanou:
Ontology-enablement of a system for semantic annotation of digital documents. SemAnnot@ISWC 2004 - 2003
- [c9]Gerardo Sierra, John McNaught:
Natural Language System for Terminological Information Retrieval. CICLing 2003: 541-552 - [c8]Gabriel Castillo, Gerardo Sierra, John McNaught:
An improved algorithm for semantic clustering. ISICT 2003: 304-309 - 2000
- [c7]Gerardo Sierra, John McNaught:
Extracting semantic clusters from the alignment of definitions. COLING 2000: 795-801 - [c6]William J. Black, John McNaught, Gian Piero Zarri, Andreas Persidis, Andrew Brasher, Luca Gilardoni, Elisa Bertino, Giovanni Semeraro, Pietro Leo:
A Semi-automatic System for Conceptual Annotation, its Application to Resource Construction and Evaluation. LREC 2000 - [c5]Gerardo Sierra, John McNaught:
Extraction of Semantic Clusters for Terminological Information Retrieval from MRDs. LREC 2000 - [c4]Kalliopi Zervanou, John McNaught:
A Term-Based Methodology for Template Creation in Information Extraction. Natural Language Processing 2000: 418-423 - 1999
- [c3]Elisa Bertino, Bill Black, Andrew Brasher, Vito Candela, Barbara Catania, Diana Deavin, Luigi Di Pace, Floriana Esposito, Pietro Leo, John McNaught, Andreas Persidis, Fabio Rinaldi, Giovanni Semeraro, Gian Piero Zarri:
CONCERTO, Conceptual Indexing, Querying and Retrieval of Digital Documents. ICMCS, Vol. 2 1999: 1106-1109 - [c2]Gian Piero Zarri, Elisa Bertino, Bill Black, Andrew Brasher, Barbara Catania, Diana Deavin, Luigi Di Pace, Floriana Esposito, Pietro Leo, John McNaught, Andreas Persidis, Fabio Rinaldi, Giovanni Semeraro:
CONCERTO, An Environment for the 'Intelligent' Indexing, Querying and Retrieval of Digital Documents. ISMIS 1999: 226-234 - 1983
- [c1]John McNaught:
The Generation Of Term Definitions From An On-Line Terminological Thesaurus. EACL 1983: 90-95
Coauthor Index
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