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Paul N. Schofield
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2020 – today
- 2023
- [j29]Luke T. Slater
, John A. Williams
, Paul N. Schofield
, Sophie Russell, Samantha C. Pendleton
, Andreas Karwath
, Hilary Fanning
, Simon Ball
, Robert Hoehndorf
, Georgios V. Gkoutos
:
Klarigi: Characteristic explanations for semantic biomedical data. Comput. Biol. Medicine 153: 106425 (2023) - [c18]Núria Queralt-Rosinach, Paul N. Schofield, Marco Roos, Robert Hoehndorf:
Updating the CEMO ontology for future epidemiological challenges. SWAT4HCLS 2023: 151-152 - 2021
- [j28]Senay Kafkas, Sara Althubaiti
, Georgios V. Gkoutos
, Robert Hoehndorf
, Paul N. Schofield:
Linking common human diseases to their phenotypes; development of a resource for human phenomics. J. Biomed. Semant. 12(1): 17 (2021) - [j27]Luke T. Slater
, John A. Williams
, Andreas Karwath
, Hilary Fanning
, Simon Ball
, Paul N. Schofield
, Robert Hoehndorf
, Georgios V. Gkoutos
:
Multi-faceted semantic clustering with text-derived phenotypes. Comput. Biol. Medicine 138: 104904 (2021) - [c17]Luke T. Slater, John A. Williams
, Paul N. Schofield, Georgios V. Gkoutos:
Exploring Sentiment as a Potential Indicator of Bias in Disease Ontologies. BIBM 2021: 1826-1834 - [c16]Núria Queralt-Rosinach, Mark D. Wilkinson, Rajaram Kaliyaperumal, César Henrique Bernabé, Qinqin Long, Michel Dumontier, Paul N. Schofield, Marco Roos:
Reuse of Design Pattern Measurements for Health Data. JOWO 2021
2010 – 2019
- 2019
- [j26]Imane Boudellioua, Maxat Kulmanov
, Paul N. Schofield
, Georgios V. Gkoutos
, Robert Hoehndorf
:
DeepPVP: phenotype-based prioritization of causative variants using deep learning. BMC Bioinform. 20(1): 65 (2019) - 2018
- [j25]Georgios V. Gkoutos
, Paul N. Schofield
, Robert Hoehndorf
:
The anatomy of phenotype ontologies: principles, properties and applications. Briefings Bioinform. 19(5): 1008-1021 (2018) - [j24]Maxat Kulmanov
, Paul N. Schofield
, Georgios V. Gkoutos
, Robert Hoehndorf
:
Ontology-based validation and identification of regulatory phenotypes. Bioinform. 34(17): i857-i865 (2018) - [i2]Balázs G. Madas, Paul N. Schofield:
Survey on data management in radiation protection research. CoRR abs/1805.05463 (2018) - 2017
- [j23]Miguel Ángel Rodríguez-García, Georgios V. Gkoutos
, Paul N. Schofield
, Robert Hoehndorf
:
Integrating phenotype ontologies with PhenomeNET. J. Biomed. Semant. 8(1): 58:1-58:11 (2017) - [j22]Imane Boudellioua, Rozaimi B. Mahamad Razali
, Maxat Kulmanov
, Yasmeen Hashish, Vladimir B. Bajic
, Eva Goncalves-Serra, Nadia Schoenmakers
, Georgios V. Gkoutos
, Paul N. Schofield
, Robert Hoehndorf
:
Semantic prioritization of novel causative genomic variants. PLoS Comput. Biol. 13(4) (2017) - 2016
- [j21]Hannah M. Fisher
, Robert Hoehndorf
, Bruno S. Bazelato, Soheil S. Dadras, Lloyd E. King, Georgios V. Gkoutos
, John P. Sundberg, Paul N. Schofield:
DermO; an ontology for the description of dermatologic disease. J. Biomed. Semant. 7: 38 (2016) - [j20]Luke T. Slater
, Georgios V. Gkoutos
, Paul N. Schofield, Robert Hoehndorf
:
Using AberOWL for fast and scalable reasoning over BioPortal ontologies. J. Biomed. Semant. 7: 49 (2016) - [c15]Robert Hoehndorf
, Liam Mencel, Georgios V. Gkoutos
, Paul N. Schofield:
Large-Scale Reasoning over Functions in Biomedical Ontologies. FOIS 2016: 299-312 - [c14]Miguel Ángel Rodríguez-García, Luke T. Slater, Imane Boudellioua, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf:
Updates to the AberOWL Ontology Repository. ICBO/BioCreative 2016 - [c13]Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
To MIREOT or not to MIREOT? A Case Study of the Impact of Using MIREOT in the Experimental Factor Ontology (EFO). ICBO/BioCreative 2016 - [c12]Miguel Ángel Rodríguez-García, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
Integrating phenotype ontologies with PhenomeNET. OM@ISWC 2016: 201-209 - 2015
- [j19]Robert Hoehndorf
, Paul N. Schofield, Georgios V. Gkoutos
:
The role of ontologies in biological and biomedical research: a functional perspective. Briefings Bioinform. 16(6): 1069-1080 (2015) - [j18]Robert Hoehndorf
, Michael Gruenberger
, Georgios V. Gkoutos
, Paul N. Schofield:
Similarity-based search of model organism, disease and drug effect phenotypes. J. Biomed. Semant. 6: 6 (2015) - [j17]Robert Hoehndorf
, Luke T. Slater
, Paul N. Schofield, Georgios V. Gkoutos
:
Aber-OWL: a framework for ontology-based data access in biology. BMC Bioinform. 16: 26:1-26:9 (2015) - [c11]Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
Using Aber-OWL for fast and scalable reasoning over BioPortal ontologies. ICBO 2015 - [c10]Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf:
AberOWL: an ontology portal with OWL EL reasoning. ICBO 2015 - [c9]Luke T. Slater
, Miguel Ángel Rodríguez-García
, Keiron O'Shea, Paul N. Schofield, Georgios V. Gkoutos
, Robert Hoehndorf
:
Experiences with Aber-OWL, an Ontology Repository with OWL EL Reasoning. OWLED 2015: 81-86 - [c8]Miguel Ángel Rodríguez-García, Luke T. Slater, Keiron O'Shea, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf:
Visualising Ontologies with AberOWL. SWAT4LS 2015: 183-192 - 2014
- [j16]Robert Hoehndorf
, Tanya Hiebert, Nigel W. Hardy, Paul N. Schofield, Georgios V. Gkoutos
, Michel Dumontier
:
Mouse model phenotypes provide information about human drug targets. Bioinform. 30(5): 719-725 (2014) - [j15]Sebastian Köhler
, Sandra C. Doelken
, Christopher J. Mungall
, Sebastian Bauer, Helen V. Firth, Isabelle Bailleul-Forestier, Graeme C. M. Black
, Danielle L. Brown, Michael Brudno, Jennifer Campbell, David R. FitzPatrick
, Janan T. Eppig, Andrew P. Jackson
, Kathleen Freson
, Marta Gîrdea, Ingo Helbig, Jane A. Hurst, Johanna Jähn, Laird G. Jackson, Anne M. Kelly, David H. Ledbetter, Sahar Mansour, Christa L. Martin, Celia Moss, Andrew D. Mumford
, Willem H. Ouwehand
, Soo-Mi Park, Erin Rooney Riggs, Richard H. Scott, Sanjay Sisodiya, Steven Van Vooren, Ronald J. Wapner
, Andrew O. M. Wilkie
, Caroline F. Wright
, Anneke T. Vulto-van Silfhout, Nicole de Leeuw, Bert B. A. de Vries, Nicole L. Washington, Cynthia L. Smith
, Monte Westerfield, Paul N. Schofield, Barbara J. Ruef
, Georgios V. Gkoutos
, Melissa A. Haendel
, Damian Smedley, Suzanna E. Lewis, Peter N. Robinson:
The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. Nucleic Acids Res. 42(Database-Issue): 966-974 (2014) - [c7]Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos:
Aber-OWL: A Framework for Ontology-based Data Access in Biology. SWAT4LS 2014 - [i1]Robert Hoehndorf
, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos:
Aber-OWL: a framework for ontology-based data access in biology. CoRR abs/1407.6812 (2014) - 2013
- [j14]Paul N. Schofield, John P. Sundberg, Beth A. Sundberg, Colin McKerlie
, Georgios V. Gkoutos
:
The mouse pathology ontology, MPATH; structure and applications. J. Biomed. Semant. 4: 18 (2013) - 2012
- [j13]Pascale Gaudet, Cecilia N. Arighi
, Frederic B. Bastian
, Alex Bateman
, Judith A. Blake, J. Michael Cherry, Peter D'Eustachio
, Robert D. Finn
, Michelle G. Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin
, Ilene Karsch-Mizrachi
, Monica C. Munoz-Torres, Darren A. Natale
, Claire O'Donovan
, B. F. Francis Ouellette
, Kim D. Pruitt
, Marc Robinson-Rechavi
, Susanna-Assunta Sansone, Paul N. Schofield, Granger G. Sutton, Kimberly Van Auken, Sona Vasudevan, Cathy H. Wu
, Jasmine Young, Raja Mazumder
:
Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference. Database J. Biol. Databases Curation 2012 (2012) - [j12]Georgios V. Gkoutos
, Paul N. Schofield, Robert Hoehndorf
:
The Units Ontology: a tool for integrating units of measurement in science. Database J. Biol. Databases Curation 2012 (2012) - [c6]Robert Hoehndorf, Anika Oellrich, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos:
Linking PharmGKB to Phenotype Studies and Animal Models of Disease for Drug Repurposing. Pacific Symposium on Biocomputing 2012: 388-399 - 2011
- [j11]Pascale Gaudet, Amos Bairoch
, Dawn Field, Susanna-Assunta Sansone
, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake
, Carol J. Bult, J. Michael Cherry
, Rex L. Chisholm
, Guy Cochrane
, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin
, Robert Gentleman, Carole A. Goble
, Takashi Gojobori, John M. Hancock, Douglas G. Howe
, Tadashi Imanishi
, Janet Kelso
, David Landsman
, Suzanna E. Lewis
, Ilene Karsch-Mizrachi
, Sandra E. Orchard
, B. F. Francis Ouellette
, Shoba Ranganathan
, Lorna J. Richardson
, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan
, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki:
Towards BioDBcore: a community-defined information specification for biological databases. Database J. Biol. Databases Curation 2011 (2011) - [j10]Robert Hoehndorf
, Michel Dumontier
, Anika Oellrich, Sarala M. Wimalaratne
, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos
:
A common layer of interoperability for biomedical ontologies based on OWL EL. Bioinform. 27(7): 1001-1008 (2011) - [j9]Ravensara S. Travillian, Tomasz Adamusiak, Tony Burdett, Michael Gruenberger, John M. Hancock, Ann-Marie Mallon, James Malone, Paul N. Schofield, Helen E. Parkinson:
Anatomy ontologies and potential users: bridging the gap. J. Biomed. Semant. 2(S-4): S3 (2011) - [j8]Sebastian Köhler
, Sebastian Bauer, Chris Mungall
, Gabriele Carletti, Cynthia L. Smith
, Paul N. Schofield, Georgios V. Gkoutos
, Peter N. Robinson
:
Improving ontologies by automatic reasoning and evaluation of logical definitions. BMC Bioinform. 12: 418 (2011) - [j7]Pascale Gaudet, Amos Bairoch
, Dawn Field, Susanna-Assunta Sansone
, Chris F. Taylor, Teresa K. Attwood
, Alex Bateman
, Judith A. Blake
, Carol J. Bult, J. Michael Cherry
, Rex L. Chisholm
, Guy Cochrane
, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin
, Robert Gentleman, Carole A. Goble
, Takashi Gojobori, John M. Hancock
, Douglas G. Howe, Tadashi Imanishi
, Janet Kelso
, David Landsman
, Suzanna E. Lewis
, Ilene Karsch-Mizrachi
, Sandra E. Orchard
, B. F. Francis Ouellette, Shoba Ranganathan
, Lorna J. Richardson
, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan
, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki:
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res. 39(Database-Issue): 7-10 (2011) - [c5]Ravensara S. Travillian, James Malone, Chao Pang, John M. Hancock, Peter W. H. Holland, Paul N. Schofield, Helen E. Parkinson:
The Vertebrate Bridging Ontology (VBO). ICBO 2011 - 2010
- [j6]Damian Smedley, Paul N. Schofield, Chao-Kung Chen, Vassilis Aidinis
, Crysanthi Ainali, Jonathan B. L. Bard, Rudi Balling
, Ewan Birney
, Andrew Blake, Erik Bongcam-Rudloff, Anthony J. Brookes, Gianni Cesareni, Christina Chandras, Janan T. Eppig, Paul Flicek
, Georgios V. Gkoutos
, Simon Greenaway, Michael Gruenberger
, Jean-Karim Hériché
, Andrew Lyall, Ann-Marie Mallon, Dawn Muddyman, Florian Reisinger, Martin Ringwald, Nadia A. Rosenthal
, Klaus Schughart, Morris A. Swertz
, Gudmundur A. Thorisson
, Michael Zouberakis, John M. Hancock:
Finding and sharing: new approaches to registries of databases and services for the biomedical sciences. Database J. Biol. Databases Curation 2010 (2010) - [j5]Michael Zouberakis, Christina Chandras, Morris A. Swertz
, Damian Smedley, Michael Gruenberger
, Jonathan B. L. Bard, Klaus Schughart, Nadia A. Rosenthal
, John M. Hancock, Paul N. Schofield, George Kollias
, Vassilis Aidinis
:
Mouse Resource Browser - a database of mouse databases. Database J. Biol. Databases Curation 2010 (2010)
2000 – 2009
- 2009
- [j4]Christina Chandras, Thomas Weaver, Michael Zouberakis, Damian Smedley, Klaus Schughart
, Nadia A. Rosenthal
, John M. Hancock, George Kollias
, Paul N. Schofield, Vassilis Aidinis
:
Models for financial sustainability of biological databases and resources. Database J. Biol. Databases Curation 2009 (2009) - 2008
- [j3]Damian Smedley, Morris A. Swertz
, Katy Wolstencroft
, Glenn Proctor, Michael Zouberakis, Jonathan B. L. Bard, John M. Hancock
, Paul N. Schofield:
Solutions for data integration in functional genomics: a critical assessment and case study. Briefings Bioinform. 9(6): 532-544 (2008) - [c4]Christina Chandras, Tom Weaver, Michael Zouberakis, John M. Hancock
, Paul N. Schofield, Vassilis Aidinis
:
Digital preservation - financial sustainability of biological data and material resources. BIBE 2008: 1-6 - [c3]John M. Hancock
, Paul N. Schofield, Christina Chandras, Michael Zouberakis, Vassilis Aidinis
, Damian Smedley, Nadia A. Rosenthal, Klaus Schughart
:
CASIMIR: Coordination and Sustainability of International Mouse Informatics Resources. BIBE 2008: 1-6 - [c2]Morris A. Swertz
, Damian Smedley, Katy Wolstencroft
, Rudi Alberts, Michael Zouberakis, Vassilis Aidinis
, Klaus Schughart
, Paul N. Schofield, Ritsert C. Jansen:
Towards dynamic database infrastructures for mouse genetics. BIBE 2008: 1-7 - [c1]Michael Zouberakis, Christina Chandras, John M. Hancock
, Paul N. Schofield, Vassilis Aidinis
:
The Mouse Resource Browser (MRB) - A near-complete registry of mouse resources. BIBE 2008: 1-5 - [p1]Paul N. Schofield, Björn Rozell, Georgios V. Gkoutos
:
Towards a Disease Ontology. Anatomy Ontologies for Bioinformatics 2008: 119-130 - 2007
- [j2]Kai Salomaa, Paul N. Schofield:
State Complexity of Additive Weighted Finite Automata. Int. J. Found. Comput. Sci. 18(6): 1407-1416 (2007) - 2004
- [j1]Paul N. Schofield, Jonathan B. L. Bard, Catherine Booth, Jacques Boniver, Vincenzo Covelli, Philippe Delvenne, Michele Ellender, Wilhelm Engstrom, Wolfgang Goessner, Michael Gruenberger
, Heinz Hoefler, John Hopewell, Mariatheresa Mancuso, Carmel Mothersill, Christopher S. Potten, Leticia Quintanilla-Fend, Björn Rozell, Hannu Sariola, John P. Sundberg, Andrew Ward
:
Pathbase: a database of mutant mouse pathology. Nucleic Acids Res. 32(Database-Issue): 512-515 (2004)
Coauthor Index
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