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2020 – today
- 2025
[c7]Reto Krummenacher
, Osman Seckin Simsek, Michèle Leemann, Leila T. Alexander, Torsten Schwede, Florina M. Ciorba, Joana Pereira:
Scalable Genomic Context Analysis with GCsnap2 on HPC Clusters. PASC 2025: 1-12- [i3]Reto Krummenacher, Osman Seckin Simsek, Michèle Leemann, Leila T. Alexander, Torsten Schwede, Florina M. Ciorba, Joana Pereira:
Scalable Genomic Context Analysis with GCsnap2 on HPC Clusters. CoRR abs/2505.02195 (2025) - 2024
- [j22]Lorenzo Pantolini, Gabriel Studer, Joana Pereira, Janani Durairaj, Gerardo Tauriello, Torsten Schwede:
Embedding-based alignment: combining protein language models with dynamic programming alignment to detect structural similarities in the twilight-zone. Bioinform. 40(1) (2024) - [c6]Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Yuedong Zhang, Emanuele Vitali, Bruno Guindani, Danilo Ardagna, Cristina Silvano, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Akash Deep Biswas, Jan Martinovic, Martin Golasowski, Paulo Silva, Ada Böhm, Jakub Beránek, Jan Krenek, Branislav Jansik, Peter Thoman, Philip Salzmann, Thomas Fahringer, Torsten Schwede, Leila Tamara Alexander, Gerardo Tauriello, Janani Durairaj, Biagio Cosenza, Luigi Crisci, Andrew Emerson, Federico Ficarelli, Erik Lindahl, Sebastian Wingbermühle, Daniele Gregori, Silvano Coletti, Emanuele Sana, Philipp Gschwandtner:
LIGATE - LIgand Generator and portable drug discovery platform AT Exascale. CF (Companion) 2024 - 2023
- [c5]Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Emanuele Vitali, Cristina Silvano, Bruno Guindani, Danilo Ardagna, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Jan Martinovic, Paulo Silva, Ada Bohm, Jakub Beránek, Jan Krenek, Branislav Jansik, Biagio Cosenza, Luigi Crisci, Peter Thoman, Philip Salzmann, Thomas Fahringer, Leila T. Alexander, Gerardo Tauriello, Torsten Schwede, Janani Durairaj, Andrew Emerson, Federico Ficarelli, Sebastian Wingbermühle, Erik Lindahl, Daniele Gregori, Emanuele Sana, Silvano Coletti, Philipp Gschwandtner:
Tunable and Portable Extreme-Scale Drug Discovery Platform at Exascale: the LIGATE Approach. CF 2023: 272-278 - [i2]Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Emanuele Vitali, Cristina Silvano, Bruno Guindani, Danilo Ardagna, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Jan Martinovic, Paulo Silva, Ada Bohm, Jakub Beránek, Jan Krenek, Branislav Jansik, Luigi Crisci, Biagio Cosenza, Peter Thoman, Philip Salzmann, Thomas Fahringer, Leila T. Alexander, Gerardo Tauriello, Torsten Schwede, Janani Durairaj, Andrew Emerson, Federico Ficarelli, Sebastian Wingbermühle, Erik Lindahl, Daniele Gregori, Emanuele Sana, Silvano Coletti, Philipp Gschwandtner:
Tunable and Portable Extreme-Scale Drug Discovery Platform at Exascale: the LIGATE Approach. CoRR abs/2304.09953 (2023) - 2021
- [j21]Gabriel Studer, Gerardo Tauriello, Stefan Bienert, Marco Biasini, Niklaus Johner, Torsten Schwede:
ProMod3 - A versatile homology modelling toolbox. PLoS Comput. Biol. 17(1) (2021) - 2020
- [j20]Gabriel Studer, Christine Rempfer, Andrew Waterhouse, Rafal Gumienny, Jürgen Haas, Torsten Schwede:
QMEANDisCo - distance constraints applied on model quality estimation. Bioinform. 36(6): 1765-1771 (2020) - [j19]Gabriel Studer, Christine Rempfer, Andrew Waterhouse, Rafal Gumienny, Juergen Haas, Torsten Schwede:
QMEANDisCo - distance constraints applied on model quality estimation. Bioinform. 36(8): 2647 (2020) - [c4]Diana Coman Schmid, Katrin Crameri, Sabine Oesterle, Bernd Rinn, Thierry Sengstag, Heinz Stockinger, Leila T. Alexander, Jonathan Barda, Christian Bolliger, Urban Borstnik, Gerhard Bräunlich, Olivier Byrde, Jérôme Dauvillier, Robin Engler, Pablo Escobar Lopez, Volker Flegel, Martin Fox, Sofia Georgakopoulou, Jani Heikkinen, Martin Jacquot, Nicolas Kowenski, Guillermo Losilla, Sergio Maffioletti, Jorge Molina, Diego Moreno, Allen Neeser, Michal Okoniewski, Warren Paulus, Kevin Sayers, Torsten Schwede, Jaroslaw Surkont, Richard Wartenburger, Thomas Wüst:
SPHN - The BioMedIT Network: A Secure IT Platform for Research with Sensitive Human Data. MIE 2020: 1170-1174
2010 – 2019
- 2018
- [j18]Andrew Waterhouse, Martino Bertoni, Stefan Bienert, Gabriel Studer, Gerardo Tauriello, Rafal Gumienny, Florian T. Heer, Tjaart A. P. de Beer, Christine Rempfer, Lorenza Bordoli, Rosalba Lepore, Torsten Schwede:
SWISS-MODEL: homology modelling of protein structures and complexes. Nucleic Acids Res. 46(Webserver-Issue): W296-W303 (2018) - 2017
- [j17]Stefan Bienert, Andrew Waterhouse, Tjaart A. P. de Beer, Gerardo Tauriello, Gabriel Studer, Lorenza Bordoli, Torsten Schwede:
The SWISS-MODEL Repository - new features and functionality. Nucleic Acids Res. 45(Database-Issue): D313-D319 (2017) - 2014
- [j16]Gabriel Studer, Marco Biasini, Torsten Schwede:
Assessing the local structural quality of transmembrane protein models using statistical potentials (QMEANBrane). Bioinform. 30(17): 505-511 (2014) - [j15]Marco Biasini, Stefan Bienert, Andrew Waterhouse, Konstantin Arnold, Gabriel Studer, Tobias Schmidt, Florian Kiefer, Tiziano Gallo Cassarino, Martino Bertoni, Lorenza Bordoli, Torsten Schwede:
SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information. Nucleic Acids Res. 42(Webserver-Issue): 252-258 (2014) - [j14]Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel:
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. Nucleic Acids Res. 42(Webserver-Issue): 436-441 (2014) - 2013
- [j13]Juergen Haas, Steven Roth, Konstantin Arnold, Florian Kiefer, Tobias Schmidt, Lorenza Bordoli, Torsten Schwede:
The Protein Model Portal - a comprehensive resource for protein structure and model information. Database J. Biol. Databases Curation 2013 (2013) - [j12]Valerio Mariani, Marco Biasini, Alessandro Barbato, Torsten Schwede:
lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests. Bioinform. 29(21): 2722-2728 (2013) - 2012
- [j11]Alessandro Barbato, Pascal Benkert, Torsten Schwede, Anna Tramontano, Jan Kosinski:
Improving your target-template alignment with MODalign. Bioinform. 28(7): 1038-1039 (2012) - [j10]Torsten Schwede, Dagmar Iber:
ECCB 2012: The 11th European Conference on Computational Biology. Bioinform. 28(18): 303-305 (2012) - 2011
- [j9]Pascal Benkert, Marco Biasini, Torsten Schwede:
Toward the estimation of the absolute quality of individual protein structure models. Bioinform. 27(3): 343-350 (2011) - 2010
- [j8]Marco Biasini, Valerio Mariani, Jürgen Haas, Stefan Scheuber, Andreas D. Schenk, Torsten Schwede, Ansgar Philippsen:
OpenStructure: a flexible software framework for computational structural biology. Bioinform. 26(20): 2626-2628 (2010) - [i1]Jürgen Haas, Torsten Schwede:
Protein Homology Modelling - Providing Three-dimensional Models for Proteins where Experimental Data is Missing. ERCIM News 2010(82): 20-21 (2010)
2000 – 2009
- 2009
- [j7]Helen M. Berman, John D. Westbrook, Margaret J. Gabanyi, Wendy Tao, Raship Shah, Andrei Kouranov, Torsten Schwede, Konstantin Arnold, Florian Kiefer, Lorenza Bordoli, Jürgen Kopp, Michael Podvinec, Paul D. Adams, Lester G. Carter, Wladek Minor, Rajesh Nair, Joshua La Baer:
The protein structure initiative structural genomics knowledgebase. Nucleic Acids Res. 37(Database-Issue): 365-368 (2009) - [j6]Florian Kiefer, Konstantin Arnold, Michael Künzli, Lorenza Bordoli, Torsten Schwede:
The SWISS-MODEL Repository and associated resources. Nucleic Acids Res. 37(Database-Issue): 387-392 (2009) - [j5]Pascal Benkert, Michael Künzli, Torsten Schwede:
QMEAN server for protein model quality estimation. Nucleic Acids Res. 37(Web-Server-Issue): 510-514 (2009) - 2007
- [c3]Dominique Zosso, Konstantin Arnold, Torsten Schwede, Michael Podvinec:
SWISS-TANDEM: A Web-Based Workspace for MS/MS Protein Identification on PC Grids. CBMS 2007: 406-411 - [c2]Dominique Zosso, Michael Podvinec, Markus Müller, Ruedi Aebersold, Manuel C. Peitsch, Torsten Schwede:
Tandem Mass Spectrometry Protein Identification on a PC Grid. HealthGrid 2007: 3-12 - 2006
- [j4]Konstantin Arnold, Lorenza Bordoli, Jürgen Kopp, Torsten Schwede:
The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinform. 22(2): 195-201 (2006) - [j3]Jürgen Kopp, Torsten Schwede:
The SWISS-MODEL Repository: new features and functionalities. Nucleic Acids Res. 34(Database-Issue): 315-318 (2006) - [c1]Michael Podvinec, Sergio Maffioletti, Peter Z. Kunszt, Konstantin Arnold, Lorenzo Cerutti, Bruno Nyffeler, Ralph Schlapbach, Can Türker, Heinz Stockinger, Arthur J. Thomas, Manuel C. Peitsch, Torsten Schwede:
The SwissBioGrid Project: Objectivse, Preliminary Results and Lessons Learned. e-Science 2006: 148 - 2004
- [j2]Jürgen Kopp, Torsten Schwede:
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models. Nucleic Acids Res. 32(Database-Issue): 230-234 (2004) - 2003
- [j1]Torsten Schwede, Jürgen Kopp, Nicolas Guex, Manuel C. Peitsch:
SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res. 31(13): 3381-3385 (2003)
Coauthor Index
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