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ORCIDAnders Krogh
Person information
- affiliation: University of Copenhagen, The Bioinformatics Centre, Denmark
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2020 – today
- 2024
[i3]Jennifer Anne Bartell, Sander Boisen Valentin, Anders Krogh, Henning Langberg, Martin Bøgsted:
A primer on synthetic health data. CoRR abs/2401.17653 (2024)- 2023
- [j36]Viktoria Schuster
, Anders Krogh:
The Deep Generative Decoder: MAP estimation of representations improves modelling of single-cell RNA data. Bioinform. 39(9) (2023) - 2021
- [j35]Viktoria Schuster, Anders Krogh:
A Manifold Learning Perspective on Representation Learning: Learning Decoder and Representations without an Encoder. Entropy 23(11): 1403 (2021) - [i2]Viktoria Schuster, Anders Krogh:
A manifold learning perspective on representation learning: Learning decoder and representations without an encoder. CoRR abs/2108.13910 (2021) - [i1]Viktoria Schuster, Anders Krogh:
The deep generative decoder: Using MAP estimates of representations. CoRR abs/2110.06672 (2021) - 2020
- [j34]Thilde Terkelsen, Anders Krogh, Elena Papaleo:
CAncer bioMarker Prediction Pipeline (CAMPP) - A standardized framework for the analysis of quantitative biological data. PLoS Comput. Biol. 16(3) (2020)
2010 – 2019
- 2019
- [j33]Iñigo Prada-Luengo, Anders Krogh, Lasse Maretty, Birgitte Regenberg:
Sensitive detection of circular DNAs at single-nucleotide resolution using guided realignment of partially aligned reads. BMC Bioinform. 20(1): 663 (2019) - 2018
- [j32]Maria Luisa Matey-Hernandez, Lasse Maretty, Jacob Malte Jensen, Bent Petersen, Jonas Andreas Sibbesen, Siyang Liu, Palle Villesen, Laurits Skov, Kirstine Belling, Christian Theil Have, José M. G. Izarzugaza, Marie Grosjean, Jette Bork-Jensen, Jakob Grove, Thomas D. Als, Shujia Huang, Yuqi Chang, Ruiqi Xu, Weijian Ye, Junhua Rao, Xiaosen Guo, Jihua Sun, Hongzhi Cao, Chen Ye, John van Beusekom, Thomas Espeseth, Esben N. Flindt, Rune M. Friborg, Anders E. Halager, Stephanie Le Hellard, Christina M. Hultman, Francesco Lescai, Shengting Li, Ole Lund, Peter Løngreen, Thomas Mailund, Ole Mors, Christian N. S. Pedersen, Thomas Sicheritz-Pontén, Patrick F. Sullivan, Ali Syed, David Westergaard, Rachita Yadav, Ning Li, Xun Xu, Torben Hansen, Anders Krogh, Lars Bolund, Thorkild I. A. Sørensen, Oluf Pedersen, Ramneek Gupta, Simon Rasmussen, Søren Besenbacher, Anders D. Børglum, Jun Wang, Hans Eiberg, Karsten Kristiansen, Mikkel Heide Schierup, Søren Brunak:
Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios. BMC Bioinform. 19(1): 239:1-239:12 (2018) - 2017
- [j31]Lasse Maretty, Jacob Malte Jensen, Bent Petersen, Jonas Andreas Sibbesen, Siyang Liu, Palle Villesen, Laurits Skov, Kirstine Belling, Christian Theil Have, José M. G. Izarzugaza, Marie Grosjean, Jette Bork-Jensen, Jakob Grove, Thomas D. Als, Shujia Huang, Yuqi Chang, Ruiqi Xu, Weijian Ye, Junhua Rao, Xiaosen Guo, Jihua Sun, Hongzhi Cao, Chen Ye, John van Beusekom, Thomas Espeseth, Esben N. Flindt, Rune M. Friborg, Anders E. Halager, Stephanie Le Hellard, Christina M. Hultman, Francesco Lescai, Shengting Li, Ole Lund, Peter Løngreen, Thomas Mailund, Maria Luisa Matey-Hernandez, Ole Mors, Christian N. S. Pedersen, Thomas Sicheritz-Pontén, Patrick F. Sullivan, Ali Syed, David Westergaard, Rachita Yadav, Ning Li, Xun Xu, Torben Hansen, Anders Krogh, Lars Bolund, Thorkild I. A. Sørensen, Oluf Pedersen, Ramneek Gupta, Simon Rasmussen, Søren Besenbacher, Anders D. Børglum, Jun Wang, Hans Eiberg, Karsten Kristiansen, Søren Brunak, Mikkel Heide Schierup:
Sequencing and de novo assembly of 150 genomes from Denmark as a population reference. Nat. 548(7665): 87-91 (2017) - [j30]Mireya Plass, Simon H. Rasmussen, Anders Krogh:
Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors. PLoS Comput. Biol. 13(4) (2017) - 2014
- [j29]Peter Kerpedjiev, Jes Frellsen, Stinus Lindgreen, Anders Krogh:
Adaptable probabilistic mapping of short reads using position specific scoring matrices. BMC Bioinform. 15: 100 (2014) - 2010
- [j28]Anders Jacobsen Skanderup, Anders Krogh, Sakari Kauppinen, Morten Lindow:
miRMaid: a unified programming interface for microRNA data resources. BMC Bioinform. 11: 29 (2010)
2000 – 2009
- 2009
- [j27]Lisa Bartoli, Piero Fariselli, Anders Krogh, Rita Casadio:
CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information. Bioinform. 25(21): 2757-2763 (2009) - [j26]Eivind Valen, Albin Sandelin, Ole Winther, Anders Krogh:
Discovery of Regulatory Elements is Improved by a Discriminatory Approach. PLoS Comput. Biol. 5(11) (2009) - 2008
- [j25]Kyoung-Jae Won, Albin Sandelin, Troels Torben Marstrand, Anders Krogh:
Modeling promoter grammars with evolving hidden Markov models. Bioinform. 24(15): 1669-1675 (2008) - [j24]Man-Hung Eric Tang, Anders Krogh, Ole Winther:
BayesMD: Flexible Biological Modeling for Motif Discovery. J. Comput. Biol. 15(10): 1347-1363 (2008) - [j23]Jan Christian Bryne, Eivind Valen, Man-Hung Eric Tang, Troels Torben Marstrand, Ole Winther, Isabelle da Piedade, Anders Krogh, Boris Lenhard, Albin Sandelin:
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Nucleic Acids Res. 36(Database-Issue): 102-106 (2008) - 2007
- [j22]Stinus Lindgreen, Paul P. Gardner, Anders Krogh:
MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing. Bioinform. 23(24): 3304-3311 (2007) - [j21]Stinus Lindgreen, Paul P. Gardner, Anders Krogh:
Multiple alignment and structure prediction of non-coding RNA sequences. BMC Bioinform. 8(S-8) (2007) - [j20]Kyoung-Jae Won, Thomas Hamelryck, Adam Prügel-Bennett, Anders Krogh:
An evolutionary method for learning HMM structure: prediction of protein secondary structure. BMC Bioinform. 8 (2007) - [j19]Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer:
Advantages of combined transmembrane topology and signal peptide prediction - the Phobius web server. Nucleic Acids Res. 35(Web-Server-Issue): 429-432 (2007) - [j18]Morten Lindow, Anders Jacobsen Skanderup, Sanne Nygaard, Yuan Mang, Anders Krogh:
Intragenomic Matching Reveals a Huge Potential for miRNA-Mediated Regulation in Plants. PLoS Comput. Biol. 3(11) (2007) - [c22]Piero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh:
Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models. BIRD 2007: 292-302 - 2006
- [j17]Stinus Lindgreen, Paul P. Gardner, Anders Krogh:
Measuring covariation in RNA alignments: physical realism improves information measures. Bioinform. 22(24): 2988-2995 (2006) - [j16]Kasper Munch, Paul P. Gardner, Peter Arctander, Anders Krogh:
A hidden Markov model approach for determining expression from genomic tiling micro arrays. BMC Bioinform. 7: 239 (2006) - [j15]Kasper Munch, Anders Krogh:
Automatic generation of gene finders for eukaryotic species. BMC Bioinform. 7: 263 (2006) - [j14]Mauro Amico, Michele Finelli, Ivan Rossi, Andrea Zauli, Arne Elofsson, Håkan Viklund, Gunnar von Heijne, David Jones, Anders Krogh, Piero Fariselli, Pier Luigi Martelli, Rita Casadio:
PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. Nucleic Acids Res. 34(Web-Server-Issue): 169-172 (2006) - [j13]Thomas Hamelryck, John T. Kent, Anders Krogh:
Sampling Realistic Protein Conformations Using Local Structural Bias. PLoS Comput. Biol. 2(9) (2006) - [j12]Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh:
Evolving the structure of hidden Markov models. IEEE Trans. Evol. Comput. 10(1): 39-49 (2006) - 2005
- [j11]Pernille Nielsen, Anders Krogh:
Large-scale prokaryotic gene prediction and comparison to genome annotation. Bioinform. 21(24): 4322-4329 (2005) - [c21]Kyoung-Jae Won, Thomas Hamelryck, Adam Prügel-Bennett, Anders Krogh:
Evolving hidden Markov models for protein secondary structure prediction. Congress on Evolutionary Computation 2005: 33-40 - [c20]Lukas Käll, Anders Krogh, Erik L. L. Sonnhammer:
An HMM posterior decoder for sequence feature prediction that includes homology information. ISMB (Supplement of Bioinformatics) 2005: 251-257 - 2004
- [j10]Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh:
Training HMM structure with genetic algorithm for biological sequence analysis. Bioinform. 20(18): 3613-3619 (2004) - [c19]Kyoung-Jae Won, Adam Prügel-Bennett, Anders Krogh:
The Block Hidden Markov Model for Biological Sequence Analysis. KES 2004: 64-70 - 2003
- [j9]Thomas Schou Larsen, Anders Krogh:
EasyGene - a prokaryotic gene finder that ranks ORFs by statistical significance. BMC Bioinform. 4: 21 (2003) - 2002
- [j8]David Ussery, Dikeos Mario Soumpasis, Søren Brunak, Hans Henrik Stærfeldt, Peder Worning, Anders Krogh:
Bias of Purine Stretches in Sequenced Chromosomes. Comput. Chem. 26(5): 531-541 (2002) - [c18]Pier Luigi Martelli, Piero Fariselli, Anders Krogh, Rita Casadio:
A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. ISMB 2002: 46-53 - 2001
- [c17]Søren Brunak, Anders Krogh:
ISMB 2001. ISMB (Supplement of Bioinformatics) 2001: 1-4 - 2000
- [c16]Jakob V. Hansen, Anders Krogh:
A General Method for Combining Predictors Tested on Protein Secondary Structure Prediction. ANNIMAB 2000: 259-264
1990 – 1999
- 1999
- [j7]Anders Krogh, Søren Kamaric Riis:
Hidden Neural Networks. Neural Comput. 11(2): 541-563 (1999) - 1998
- [b2]Richard Durbin, Sean R. Eddy, Anders Krogh, Graeme J. Mitchison:
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. Cambridge University Press 1998, ISBN 0-521-62971-3 - [c15]Henrik Nielsen, Anders Krogh:
Prediction of Signal Peptides and Signal Anchors by a Hidden Markov Model. ISMB 1998: 122-130 - [c14]Erik L. L. Sonnhammer, Gunnar von Heijne, Anders Krogh:
A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences. ISMB 1998: 175-182 - 1997
- [j6]John A. Hertz, Anders Krogh, Benny Lautrup, Torsten Lehmann:
Nonlinear backpropagation: doing backpropagation without derivatives of the activation function. IEEE Trans. Neural Networks 8(6): 1321-1327 (1997) - [c13]Søren Kamaric Riis, Anders Krogh:
Hidden neural networks: a framework for HMM/NN hybrids. ICASSP 1997: 3233-3236 - [c12]Anders Krogh:
Two Methods for Improving Performance of a HMM and their Application for Gene Finding. ISMB 1997: 179-186 - 1996
- [j5]Richard Hughey, Anders Krogh:
Hidden Markov models for sequence analysis: extension and analysis of the basic method. Comput. Appl. Biosci. 12(2): 95-107 (1996) - [j4]Kimmen Sjölander, Kevin Karplus, Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, David Haussler:
Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology. Comput. Appl. Biosci. 12(4): 327-345 (1996) - [j3]Søren Kamaric Riis, Anders Krogh:
Improving Predicition of Protein Secondary Structure Using Structured Neural Networks and Multiple Sequence Alignments. J. Comput. Biol. 3(1): 163-183 (1996) - 1995
- [c11]Pierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh:
Periodic Sequence Patterns in Human Exons. ISMB 1995: 30-38 - [c10]Anders Krogh, Graeme J. Mitchison:
Maximum Entropy Weighting of Aligned Sequences of Proteins or DNA. ISMB 1995: 215-221 - [c9]Peter Sollich, Anders Krogh:
Learning with ensembles: How overfitting can be useful. NIPS 1995: 190-196 - [c8]Anders Krogh, Søren Kamaric Riis:
Prediction of Beta Sheets in Proteins. NIPS 1995: 917-923 - 1994
- [j2]Nicolò Cesa-Bianchi, Anders Krogh, Manfred K. Warmuth:
Bounds on approximate steepest descent for likelihood maximization in exponential families. IEEE Trans. Inf. Theory 40(4): 1215-1218 (1994) - [c7]Anders Krogh:
Hidden Markov models for labeled sequences. ICPR (2) 1994: 140-144 - [c6]Anders Krogh, Jesper Vedelsby:
Neural Network Ensembles, Cross Validation, and Active Learning. NIPS 1994: 231-238 - 1993
- [j1]Jan Gorodkin, Lars Kai Hansen, Anders Krogh, Claus Svarer, Ole Winther:
A Quantitative Study Of Pruning By Optimal Brain Damage. Int. J. Neural Syst. 4(2): 159-169 (1993) - [c5]Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, Kimmen Sjölander, David Haussler:
Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein Families. ISMB 1993: 47-55 - [c4]Pierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh:
Hidden Markov Models for Human Genes. NIPS 1993: 761-768 - 1991
- [b1]John A. Hertz, Anders Krogh, Richard G. Palmer:
Introduction to the theory of neural computation. The advanced book program 1, Addison-Wesley 1991, ISBN 0201515601, pp. I-XXII, 1-327 - [c3]Anders Krogh, John A. Hertz:
A Simple Weight Decay Can Improve Generalization. NIPS 1991: 950-957 - 1990
- [c2]Anders Krogh, John A. Hertz:
Dynamics of Generalization in Linear Perceptrons. NIPS 1990: 897-903
1980 – 1989
- 1989
- [c1]Anders Krogh, C. I. Thorbergsson, John A. Hertz:
A Cost Function for Internal Representations. NIPS 1989: 733-740
Coauthor Index
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