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Publication search results
found 29 matches
- 2023
- Adam Frankish, Silvia Carbonell Sala, Mark Diekhans, Irwin Jungreis, Jane E. Loveland, Jonathan M. Mudge, Cristina Sisu, James C. Wright, Carme Arnan, If Barnes, Abhimanyu Banerjee, Ruth Bennett, Andrew E. Berry, Alexandra Bignell, Carles Boix, Ferriol Calvet Riera, Daniel Cerdán-Vélez, Fiona Cunningham, Claire Davidson, Sarah M. Donaldson, Cagatay Dursun, Reham Fatima, Stefano Giorgetti, Carlos García-Girón, Jose M. Gonzalez, Matthew Hardy, Peter W. Harrison, Thibaut Hourlier, Zoe Hollis, Toby Hunt, Benjamin James, Yunzhe Jiang, Rory Johnson, Mike P. Kay, Julien Lagarde, Fergal J. Martin, Laura Martínez Gómez, Surag Nair, Pengyu Ni, Fernando Pozo, Vivek Ramalingam, Magali Ruffier, Bianca M. Schmitt, Jacob M. Schreiber, Emily Steed, Marie-Marthe Suner, Dulika Sumathipala, Irina Sycheva, Barbara Uszczynska-Ratajczak, Elizabeth Wass, Yucheng T. Yang, Andrew D. Yates, Zahoor Zafrulla, Jyoti Choudhary, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Anshul Kundaje, Benedict Paten, Michael L. Tress, Paul Flicek:
GENCODE: reference annotation for the human and mouse genomes in 2023. Nucleic Acids Res. 51(D1): 942-949 (2023) - Joshua Z. Tan, Tara Merk, Sarah Hubbard, Eliza R. Oak, Joni Pirovich, Ellie Rennie, Rolf Hoefer, Michael Zargham, Jason Potts, Chris Berg, Reuben Youngblom, Primavera De Filippi, Seth Frey, Jeff Strnad, Morshed Mannan, Kelsie Nabben, Silke Noa Elrifai, Jake Hartnell, Benjamin Mako Hill, Alexia Maddox, Woojin Lim, Tobin South, Ari Juels, Dan Boneh:
Open Problems in DAOs. CoRR abs/2310.19201 (2023) - 2021
- Sabine N. van der Veer, Lisa Riste, Sudeh Cheraghi-Sohi, Denham L. Phipps, Mary P. Tully, Kyle Bozentko, Sarah Atwood, Alex Hubbard, Carl Wiper, Malcolm Oswald, Niels Peek:
Trading off accuracy and explainability in AI decision-making: findings from 2 citizens' juries. J. Am. Medical Informatics Assoc. 28(10): 2128-2138 (2021) - The Pencil Code Collaboration, Axel Brandenburg, Anders Johansen, Philippe A. Bourdin, Wolfgang Dobler, Wladimir Lyra, Matthias Rheinhardt, Sven Bingert, Nils Erland L. Haugen, Antony Mee, Frederick Gent, Natalia Babkovskaia, Chao-Chin Yang, Tobias Heinemann, Boris Dintrans, Dhrubaditya Mitra, Simon Candelaresi, Jörn Warnecke, Petri J. Käpylä, Andreas Schreiber, Piyali Chatterjee, Maarit J. Käpylä, Xiang-Yu Li, Jonas Krüger, Jørgen R. Aarnes, Graeme R. Sarson, Jeffrey S. Oishi, Jennifer Schober, Raphaël Plasson, Christer Sandin, Ewa Karchniwy, Luiz Felippe S. Rodrigues, Alexander Hubbard, Gustavo Guerrero, Andrew Snodin, Illa R. Losada, Johannes Pekkilä, Chengeng Qian:
The Pencil Code, a modular MPI code for partial differential equations and particles: multipurpose and multiuser-maintained. J. Open Source Softw. 6(58): 2807 (2021) - Adam Frankish, Mark Diekhans, Irwin Jungreis, Julien Lagarde, Jane E. Loveland, Jonathan M. Mudge, Cristina Sisu, James C. Wright, Joel Armstrong, If Barnes, Andrew E. Berry, Alexandra Bignell, Carles Boix, Silvia Carbonell Sala, Fiona Cunningham, Tomás Di Domenico, Sarah M. Donaldson, Ian T. Fiddes, Carlos García-Girón, Jose M. Gonzalez, Tiago Grego, Matthew Hardy, Thibaut Hourlier, Kevin L. Howe, Toby Hunt, Osagie G. Izuogu, Rory Johnson, Fergal J. Martin, Laura Martínez, Shamika Mohanan, Paul Muir, Fabio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Pozo, Ferriol Calvet Riera, Magali Ruffier, Bianca M. Schmitt, Eloise Stapleton, Marie-Marthe Suner, Irina Sycheva, Barbara Uszczynska-Ratajczak, Maxim Y. Wolf, Jinrui Xu, Yucheng T. Yang, Andrew D. Yates, Daniel R. Zerbino, Yan Zhang, Jyoti Choudhary, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Benedict Paten, Michael L. Tress, Paul Flicek:
GENCODE 2021. Nucleic Acids Res. 49(Database-Issue): D916-D923 (2021) - Alexander H. Hatteland, Ricards Marcinkevics, Renaud Marquis, Thomas Frick, Ilona Hubbard, Julia E. Vogt, Thomas Brunschwiler, Philippe Ryvlin:
Exploring Relationships between Cerebral and Peripheral Biosignals with Neural Networks. ICDH 2021: 103-113 - 2019
- Charuleka Varadharajan, Boris Faybishenko, Amanda Henderson, Matthew Henderson, Valerie C. Hendrix, Susan S. Hubbard, Zarine Kakalia, Alexander Newman, Benjamin Potter, Heidi Steltzer, Roelof Versteeg, Deborah A. Agarwal, Kenneth H. Williams, Chelsea Wilmer, Yuxin Wu, Wendy Brown, Madison Burrus, Rosemary W. H. Carroll, Danielle S. Christianson, Baptiste Dafflon, Dipankar Dwivedi, Brian J. Enquist:
Challenges in Building an End-to-End System for Acquisition, Management, and Integration of Diverse Data From Sensor Networks in Watersheds: Lessons From a Mountainous Community Observatory in East River, Colorado. IEEE Access 7: 182796-182813 (2019) - Adam Frankish, Mark Diekhans, Anne-Maud Ferreira, Rory Johnson, Irwin Jungreis, Jane E. Loveland, Jonathan M. Mudge, Cristina Sisu, James C. Wright, Joel Armstrong, If Barnes, Andrew E. Berry, Alexandra Bignell, Silvia Carbonell Sala, Jacqueline Chrast, Fiona Cunningham, Tomás Di Domenico, Sarah M. Donaldson, Ian T. Fiddes, Carlos García-Girón, Jose M. Gonzalez, Tiago Grego, Matthew Hardy, Thibaut Hourlier, Toby Hunt, Osagie G. Izuogu, Julien Lagarde, Fergal J. Martin, Laura Martínez, Shamika Mohanan, Paul Muir, Fabio C. P. Navarro, Anne Parker, Baikang Pei, Fernando Pozo, Magali Ruffier, Bianca M. Schmitt, Eloise Stapleton, Marie-Marthe Suner, Irina Sycheva, Barbara Uszczynska-Ratajczak, Jinrui Xu, Andrew D. Yates, Daniel R. Zerbino, Yan Zhang, Bronwen L. Aken, Jyoti Choudhary, Mark Gerstein, Roderic Guigó, Tim J. P. Hubbard, Manolis Kellis, Benedict Paten, Alexandre Reymond, Michael L. Tress, Paul Flicek:
GENCODE reference annotation for the human and mouse genomes. Nucleic Acids Res. 47(Database-Issue): D766-D773 (2019) - Laurent Mombaerts, Alberto Carignano, Fiona C. Robertson, Timothy J. Hearn, Jin Junyang, David P. Hayden, Zoe Rutterford, Carlos T. Hotta, Katherine E. Hubbard, Marti Ruiz C. Maria, Ye Yuan, Matthew A. Hannah, Jorge M. Gonçalves, Alex Webb:
Dynamical differential expression (DyDE) reveals the period control mechanisms of the Arabidopsis circadian oscillator. PLoS Comput. Biol. 15(1) (2019) - 2017
- Perrin E. Schiebel, Jennifer M. Rieser, Alex M. Hubbard, Lillian Chen, Daniel I. Goldman:
Collisional Diffraction Emerges from Simple Control of Limbless Locomotion. Living Machines 2017: 611-618 - 2016
- Paul Hubbard, Alexander Kott, Michael Martin:
Inducing and Mitigating a Self-Reinforcing Degradation in Decision-making Teams. CoRR abs/1607.08139 (2016) - 2012
- Joerg Meyer, E. Wes Bethel, Jennifer L. Horsman, Susan S. Hubbard, Harinarayan Krishnan, Alexandru Romosan, Elizabeth H. Keating, Laura Monroe, Richard Strelitz, Phil Moore, Glenn Taylor, Ben Torkian, Timothy C. Johnson, Ian Gorton:
Visual Data Analysis as an Integral Part of Environmental Management. IEEE Trans. Vis. Comput. Graph. 18(12): 2088-2094 (2012) - 2011
- Jonathan M. Guberman, Jiye Ai, Olivier Arnaiz, Joachim Baran, Andrew Blake, Richard A. Baldock, Claude Chelala, David Croft, Anthony Cros, Rosalind J. Cutts, Alex Di Génova, Simon A. Forbes, Takatomo Fujisawa, Emanuela Gadaleta, David M. Goodstein, Gunes Gundem, Bernard Haggarty, Syed Haider, Matthew Hall, Todd W. Harris, Robin Haw, Shen Hu, Simon J. Hubbard, Jack Hsu, Vivek Iyer, Philip Jones, Toshiaki Katayama, Rhoda Kinsella, Lei Kong, Daniel Lawson, Yong Liang, Núria López-Bigas, Jie Luo, Michael J. Lush, Jeremy C. Mason, François Moreews, Nelson Ndegwa, Darren J. Oakley, Christian Perez-Llamas, Michael Primig, Elena Rivkin, Steven Rosanoff, Rebecca Shepherd, Reinhard Simon, William C. Skarnes, Damian Smedley, Linda Sperling, William Spooner, Peter Stevenson, Kevin R. Stone, Jon W. Teague, Jun Wang, Jianxin Wang, Brett Whitty, David Tai Wai Wong, Marie Wong-Erasmus, Long Yao, Ken Youens-Clark, Christina K. Yung, Junjun Zhang, Arek Kasprzyk:
BioMart Central Portal: an open database network for the biological community. Database J. Biol. Databases Curation 2011 (2011) - Hui Zhang, Penny L. Hubbard, Geoffrey J. M. Parker, Daniel C. Alexander:
Axon diameter mapping in the presence of orientation dispersion with diffusion MRI. NeuroImage 56(3): 1301-1315 (2011) - 2010
- Daniel C. Alexander, Penny L. Hubbard, Matt G. Hall, Elizabeth A. Moore, Maurice Ptito, Geoffrey J. M. Parker, Tim B. Dyrby:
Orientationally invariant indices of axon diameter and density from diffusion MRI. NeuroImage 52(4): 1374-1389 (2010) - 2008
- Antonina Andreeva, Dave Howorth, John-Marc Chandonia, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin:
Data growth and its impact on the SCOP database: new developments. Nucleic Acids Res. 36(Database-Issue): 419-425 (2008) - Jennifer A. Siepen, Khalid Belhajjame, Julian N. Selley, Suzanne M. Embury, Norman W. Paton, Carole A. Goble, Stephen G. Oliver, Robert Stevens, Lucas Zamboulis, Nigel J. Martin, Alexandra Poulovassilis, Philip Jones, Richard G. Côté, Henning Hermjakob, Melissa M. Pentony, David T. Jones, Christine A. Orengo, Simon J. Hubbard:
ISPIDER Central: an integrated database web-server for proteomics. Nucleic Acids Res. 36(Web-Server-Issue): 485-490 (2008) - Joanna S. Fowler, Nora D. Volkow, Jean Logan, Dave Alexoff, Frank Telang, Gene-Jack Wang, Christopher Wong, Yeming Ma, Aarti Kriplani, Kith Pradhan, David Schlyer, Millard Jayne, Barbara Hubbard, Pauline Carter, Donald Warner, Payton King, Colleen Shea, Youwen Xu, Lisa Muench, Karen Apelskog:
Fast uptake and long-lasting binding of methamphetamine in the human brain: Comparison with cocaine. NeuroImage 43(4): 756-763 (2008) - 2007
- Antonina Andreeva, Andreas Prlic, Tim J. P. Hubbard, Alexey G. Murzin:
SISYPHUS - structural alignments for proteins with non-trivial relationships. Nucleic Acids Res. 35(Database-Issue): 253-259 (2007) - 2006
- Lucas Zamboulis, Hao Fan, Khalid Belhajjame, Jennifer A. Siepen, Andrew R. Jones, Nigel J. Martin, Alexandra Poulovassilis, Simon J. Hubbard, Suzanne M. Embury, Norman W. Paton:
Data Access and Integration in the ISPIDER Proteomics Grid. DILS 2006: 3-18 - 2004
- Antonina Andreeva, Dave Howorth, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin:
SCOP database in 2004: refinements integrate structure and sequence family data. Nucleic Acids Res. 32(Database-Issue): 226-229 (2004) - 2002
- Loredana Lo Conte, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin:
SCOP database in 2002: refinements accommodate structural genomics. Nucleic Acids Res. 30(1): 264-267 (2002) - 2001
- Alexander Kott, Paul Hubbard, Michael Martin:
Instability of distributed decision making in in command and control systems. ACC 2001: 2743-2748 - 2000
- Loredana Lo Conte, Bart Ailey, Tim J. P. Hubbard, Steven E. Brenner, Alexey G. Murzin, Cyrus Chothia:
SCOP: a Structural Classification of Proteins database. Nucleic Acids Res. 28(1): 257-259 (2000) - 1999
- Tim J. P. Hubbard, Bart Ailey, Steven E. Brenner, Alexey G. Murzin, Cyrus Chothia:
SCOP: a Structural Classification of Proteins database. Nucleic Acids Res. 27(1): 254-256 (1999) - 1998
- Shikharesh Majumdar, Alex Hubbard:
Computation of Bounds and Performance Guarantees for Client-Server Systems Using a Queueing Network Model. HICSS (7) 1998: 415-427 - 1997
- Tim J. P. Hubbard, Alexey G. Murzin, Steven E. Brenner, Cyrus Chothia:
SCOP: a structural classification of proteins database. Nucleic Acids Res. 25(1): 236-239 (1997) - 1995
- Greg Franks, Alex Hubbard, Shikharesh Majumdar, John E. Neilson, Dorina C. Petriu, Jerome A. Rolia, C. Murray Woodside:
A Toolset for Performance Engineering and Software Design of Client-Server Systems. Perform. Evaluation 24(1-2): 117-136 (1995) - Alex Hubbard, C. Murray Woodside, Cheryl Schramm:
DECALS: distributed experiment control and logging system. CASCON 1995: 32
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