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Publication search results
found 70 matches
- 2024
- Asif Ali Khan
, Fazal Hameed
, Taha Shahroodi
, Alex K. Jones
, Jerónimo Castrillón
:
Efficient Memory Layout for Pre-Alignment Filtering of Long DNA Reads Using Racetrack Memory. IEEE Comput. Archit. Lett. 23(1): 129-132 (2024) - 2023
- Belaid Hamoum
, Elsa Dupraz
:
Channel Model and Decoder With Memory for DNA Data Storage With Nanopore Sequencing. IEEE Access 11: 52075-52087 (2023) - Alex El-Shaikh
, Bernhard Seeger
:
An Extension of DNAContainer with a Small Memory Footprint. Datenbank-Spektrum 23(3): 211-220 (2023) - Jun Hu
, Yu-Xuan Tang, Yu Zhou, Zhe Li, Bing Rao, Gui-Jun Zhang
:
Improving DNA 6mA Site Prediction via Integrating Bidirectional Long Short-Term Memory, Convolutional Neural Network, and Self-Attention Mechanism. J. Chem. Inf. Model. 63(17): 5689-5700 (2023) - Weiqi Lu
, José N. Onuchic, Michele Di Pierro:
An associative memory Hamiltonian model for DNA and nucleosomes. PLoS Comput. Biol. 19(3) (2023) - Jan Balewski, Daan Camps, Katherine Klymko, Andrew Tritt:
Efficient Quantum Counting and Quantum Content-Addressable Memory for DNA Similarity. QCE 2023: 378-384 - Muhammad Irfan, Kizheppatt Vipin, Rizwan Qureshi:
Accelerating DNA Sequence Analysis using Content-Addressable Memory in FPGAs. SmartCloud 2023: 69-72 - Arpan De, Hashem M. Mohammad
, Yiren Wang, Rajkumar Kubendran, Arindam K. Das, M. P. Anantram:
Performance Analysis of DNA Crossbar Arrays for High-Density Memory Storage Applications. CoRR abs/2304.14269 (2023) - 2022
- Esteban Garzón
, Roman Golman
, Zuher Jahshan
, Robert Hanhan
, Natan Vinshtok-Melnik
, Marco Lanuzza
, Adam Teman
, Leonid Yavits
:
Hamming Distance Tolerant Content-Addressable Memory (HD-CAM) for DNA Classification. IEEE Access 10: 28080-28093 (2022) - Fazal Hameed
, Asif Ali Khan
, Sébastien Ollivier
, Alex K. Jones
, Jerónimo Castrillón
:
DNA Pre-Alignment Filter Using Processing Near Racetrack Memory. IEEE Comput. Archit. Lett. 21(2): 53-56 (2022) - Hafiz Md. Hasan Babu, Khandaker Mohammad Mohi Uddin, Tamanna Tabassum, Mohammed Nasir Uddin:
DNA Technology for Multi-Valued Data Storage using Read Only Memory. FLAP 9(3): 781-804 (2022) - Amlan Ganguly
, Sergi Abadal
, Ishan G. Thakkar
, Natalie Enright Jerger
, Marc D. Riedel, Masoud Babaie
, Rajeev Balasubramonian, Abu Sebastian
, Sudeep Pasricha
, Baris Taskin
:
Interconnects for DNA, Quantum, In-Memory, and Optical Computing: Insights From a Panel Discussion. IEEE Micro 42(3): 40-49 (2022) - Ram Prasad Mohanty, Jaganath Prasad Mohanty
:
DMD:DNA alignment in memory constrained device. iSES 2022: 497-502 - Matteo Risso, Alessio Burrello
, Luca Benini, Enrico Macii, Massimo Poncino, Daniele Jahier Pagliari
:
Multi-Complexity-Loss DNAS for Energy-Efficient and Memory-Constrained Deep Neural Networks. ISLPED 2022: 28:1-28:6 - Fazal Hameed
, Asif Ali Khan, Sébastien Ollivier, Alex K. Jones
, Jerónimo Castrillón:
DNA Pre-alignment Filter using Processing Near Racetrack Memory. CoRR abs/2205.02046 (2022) - Marcel Khalifa, Rotem Ben Hur, Ronny Ronen, Orian Leitersdorf, Leonid Yavits, Shahar Kvatinsky:
FiltPIM: In-Memory Filter for DNA Sequencing. CoRR abs/2205.15140 (2022) - Matteo Risso, Alessio Burrello
, Luca Benini, Enrico Macii, Massimo Poncino, Daniele Jahier Pagliari:
Multi-Complexity-Loss DNAS for Energy-Efficient and Memory-Constrained Deep Neural Networks. CoRR abs/2206.00302 (2022) - 2021
- M. Hemalatha
, S. Rukmanidevi
, N. R. Shanker:
Searching time operation reduced IPV6 matching through dynamic DNA routing table for less memory and fast IP processing. Soft Comput. 25(5): 3455-3468 (2021) - Jun Zhang, Qingcai Chen
, Bin Liu
:
DeepDRBP-2L: A New Genome Annotation Predictor for Identifying DNA-Binding Proteins and RNA-Binding Proteins Using Convolutional Neural Network and Long Short-Term Memory. IEEE ACM Trans. Comput. Biol. Bioinform. 18(4): 1451-1463 (2021) - Marcel Khalifa
, Rotem Ben Hur, Ronny Ronen, Orian Leitersdorf
, Leonid Yavits, Shahar Kvatinsky:
FiltPIM: In-Memory Filter for DNA Sequencing. ICECS 2021: 1-4 - Jing-Ping Wu, Yi-Chien Lin
, Ying-Wei Wu, Shih-Wei Hsieh, Ching-Hsuan Tai, Yi-Chang Lu:
A Memory-Efficient Accelerator for DNA Sequence Alignment with Two-Piece Affine Gap Tracebacks. ISCAS 2021: 1-4 - Belaid Hamoum, Elsa Dupraz, Laura Conde-Canencia, Dominique Lavenier:
Channel Model with Memory for DNA Data Storage with Nanopore Sequencing. ISTC 2021: 1-5 - 2020
- Sen Liu, Yuping Wang
, Wuning Tong, Shiwei Wei:
A fast and memory efficient MLCS algorithm by character merging for DNA sequences alignment. Bioinform. 36(4): 1066-1073 (2020) - Roberto R. Expósito
, Jorge González-Domínguez, Juan Touriño
:
SMusket: Spark-based DNA error correction on distributed-memory systems. Future Gener. Comput. Syst. 111: 698-713 (2020) - Jiyun Zhou
, Qin Lu
, Ruifeng Xu, Lin Gui
, Hongpeng Wang:
EL_LSTM: Prediction of DNA-Binding Residue from Protein Sequence by Combining Long Short-Term Memory and Ensemble Learning. IEEE ACM Trans. Comput. Biol. Bioinform. 17(1): 124-135 (2020) - Fabio Cumbo
, Emanuel Weitschek
:
An In-Memory Cognitive-Based Hyperdimensional Approach to Accurately Classify DNA-Methylation Data of Cancer. DEXA Workshops 2020: 3-10 - Shaahin Angizi, Wei Zhang
, Deliang Fan:
Exploring DNA Alignment-in-Memory Leveraging Emerging SOT-MRAM. ACM Great Lakes Symposium on VLSI 2020: 277-282 - Ann Franchesca Laguna
, Hasindu Gamaarachchi
, Xunzhao Yin, Michael T. Niemier, Sri Parameswaran, Xiaobo Sharon Hu
:
Seed-and-Vote based In-Memory Accelerator for DNA Read Mapping. ICCAD 2020: 56:1-56:9 - Ethan Chen, Jiachen Xu, Jian-Gang Jimmy Zhu, Vanessa Chen:
Wireless Bayesian Neural Networks with Self-Assembly DNA Memory and Spin-Torque Oscillators. MWSCAS 2020: 269-272 - 2019
- Shaahin Angizi, Jiao Sun, Wei Zhang
, Deliang Fan:
AlignS: A Processing-In-Memory Accelerator for DNA Short Read Alignment Leveraging SOT-MRAM. DAC 2019: 144
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