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Journal Articles
- 2021
[j75]Paula Duek Roggli
, Camille Mary, Monique Zahn-Zabal, Amos Bairoch, Lydie Lane:
Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students. Database J. Biol. Databases Curation 2021 (2021)- 2020
- [j74]Lisanna Paladin, Mathieu Schaeffer, Pascale Gaudet, Monique Zahn-Zabal, Pierre-André Michel, Damiano Piovesan, Silvio C. E. Tosatto, Amos Bairoch:
The Feature-Viewer: a visualization tool for positional annotations on a sequence. Bioinform. 36(10): 3244-3245 (2020) - [j73]Wanessa C. Lima, Elisabeth Gasteiger, Paolo Marcatili, Paula Duek Roggli, Amos Bairoch, Pierre Cosson:
The ABCD database: a repository for chemically defined antibodies. Nucleic Acids Res. 48(Database-Issue): D261-D264 (2020) - [j72]Monique Zahn-Zabal, Pierre-André Michel, Alain Gateau, Frédéric Nikitin, Mathieu Schaeffer, Estelle Audot, Pascale Gaudet, Paula Duek Roggli, Daniel Dinis Teixeira, Valentine Rech de Laval, Kasun Samarasinghe, Amos Bairoch, Lydie Lane:
The neXtProt knowledgebase in 2020: data, tools and usability improvements. Nucleic Acids Res. 48(Database-Issue): D328-D334 (2020) - 2017
- [j71]Luc Mottin, Emilie Pasche, Julien Gobeill, Valentine Rech de Laval, Anne Gleizes, Pierre-André Michel, Amos Bairoch, Pascale Gaudet, Patrick Ruch:
Triage by ranking to support the curation of protein interactions. Database J. Biol. Databases Curation 2017: bax040 (2017) - [j70]Pascale Gaudet, Pierre-André Michel, Monique Zahn-Zabal, Aurore Britan, Isabelle Cusin, Marcin Domagalski, Paula Duek Roggli, Alain Gateau, Anne Gleizes, Valérie Hinard, Valentine Rech de Laval, JinJin Lin, Frédéric Nikitin, Mathieu Schaeffer, Daniel Dinis Teixeira, Lydie Lane, Amos Bairoch:
The neXtProt knowledgebase on human proteins: 2017 update. Nucleic Acids Res. 45(Database-Issue): D177-D182 (2017) - 2016
- [j69]Valérie Hinard, Aurore Britan, J. S. Rougier, Amos Bairoch, Hugues Abriel, Pascale Gaudet:
ICEPO: the ion channel electrophysiology ontology. Database J. Biol. Databases Curation 2016 (2016) - 2015
- [j68]Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David E. Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Ísberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan, Claire O'Donovan, Kim D. Pruitt, Ramanathan Sowdhamini, Neil D. Rawlings, Milton H. Saier Jr., Joanna L. Sharman, Michael Spedding, Konstantinos D. Tsirigos, Åke Västermark, Gerrit Vriend:
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. Database J. Biol. Databases Curation 2015 (2015) - [j67]Julien Gobeill, Arnaud Gaudinat, Emilie Pasche, Dina Vishnyakova, Pascale Gaudet, Amos Bairoch, Patrick Ruch:
Deep Question Answering for protein annotation. Database J. Biol. Databases Curation 2015 (2015) - [j66]Pascale Gaudet, Pierre-André Michel, Monique Zahn-Zabal, Isabelle Cusin, Paula Duek Roggli, Olivier Evalet, Alain Gateau, Anne Gleizes, Mario Pereira, Daniel Dinis Teixeira, Ying Zhang, Lydie Lane, Amos Bairoch:
The neXtProt knowledgebase on human proteins: current status. Nucleic Acids Res. 43(Database-Issue): 764-770 (2015) - [j65]Christine Chichester, Oliver Karch, Pascale Gaudet, Lydie Lane, Barend Mons, Amos Bairoch:
Converting neXtProt into Linked Data and nanopublications. Semantic Web 6(2): 147-153 (2015) - 2014
- [j64]Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel:
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. Nucleic Acids Res. 42(Webserver-Issue): 436-441 (2014) - [j63]Christine Chichester, Pascale Gaudet, Oliver Karch, Paul Groth, Lydie Lane, Amos Bairoch, Barend Mons, Antonis Loizou:
Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression. J. Web Semant. 29: 3-11 (2014) - 2012
- [j62]Lydie Lane, Ghislaine Argoud-Puy, Aurore Britan, Isabelle Cusin, Paula Duek Roggli, Olivier Evalet, Alain Gateau, Pascale Gaudet, Anne Gleizes, Alexandre Masselot, Catherine Zwahlen, Amos Bairoch:
neXtProt: a knowledge platform for human proteins. Nucleic Acids Res. 40(Database-Issue): 76-83 (2012) - [j61]Anne Morgat, Eric Coissac, Elisabeth Coudert, Kristian B. Axelsen, Guillaume Keller, Amos Bairoch, Alan J. Bridge, Lydie Bougueleret, Ioannis Xenarios, Alain Viari:
UniPathway: a resource for the exploration and annotation of metabolic pathways. Nucleic Acids Res. 40(Database-Issue): 761-769 (2012) - 2011
- [j60]Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki:
Towards BioDBcore: a community-defined information specification for biological databases. Database J. Biol. Databases Curation 2011 (2011) - [j59]Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki:
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res. 39(Database-Issue): 7-10 (2011) - [j58]Chantal Hulo, Edouard De Castro, Patrick Masson, Lydie Bougueleret, Amos Bairoch, Ioannis Xenarios, Philippe Le Mercier:
ViralZone: a knowledge resource to understand virus diversity. Nucleic Acids Res. 39(Database-Issue): 576-582 (2011) - 2010
- [j57]Robin Liechti, Anne Gleizes, Dmitry Kuznetsov, Lydie Bougueleret, Philippe Le Mercier, Amos Bairoch, Ioannis Xenarios:
OpenFluDB, a database for human and animal influenza virus. Database J. Biol. Databases Curation 2010 (2010) - [j56]Christian J. A. Sigrist, Lorenzo Cerutti, Edouard De Castro, Petra S. Langendijk-Genevaux, Virginie Bulliard, Amos Bairoch, Nicolas Hulo:
PROSITE, a protein domain database for functional characterization and annotation. Nucleic Acids Res. 38(Database-Issue): 161-166 (2010) - 2009
- [j55]Pascale Gaudet, Lydie Lane, Petra Fey, Alan J. Bridge, Sylvain Poux, Andrea H. Auchincloss, Kristian B. Axelsen, Silvia Braconi-Quintaje, Emmanuel Boutet, P. Brown, Elisabeth Coudert, Ruchira S. Datta, W. C. de Lima, Tulio de Oliveira, Severine Duvaud, N. Farriol-Mathis, Serenella Ferro-Rojas, Marc Feuermann, Alain Gateau, Ursula Hinz, Chantal Hulo, Janet James, Silvia Jimenez, Florence Jungo, Guillaume Keller, Phillippe Lemercier, Damien Lieberherr, Madelaine Moinat, Anastasia N. Nikolskaya, Ivo Pedruzzi, Catherine Rivoire, Bernd Roechert, Michel Schneider, E. Stanley, Michael Tognolli, Kimmen Sjölander, Lydie Bougueleret, Rex L. Chisholm, Amos Bairoch:
Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase. Database J. Biol. Databases Curation 2009 (2009) - [j54]Eric Jain, Amos Bairoch, Severine Duvaud, Isabelle Phan, Nicole Redaschi, Baris E. Suzek, Maria Jesus Martin, Peter B. McGarvey, Elisabeth Gasteiger:
Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinform. 10 (2009) - [j53]Sarah Hunter, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Ujjwal Das, Louise C. Daugherty, Lauranne Duquenne, Robert D. Finn, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Aurélie Laugraud, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex L. Mitchell, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Antony F. Quinn, Jeremy D. Selengut, Christian J. A. Sigrist, Manjula Thimma, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats:
InterPro: the integrative protein signature database. Nucleic Acids Res. 37(Database-Issue): 211-215 (2009) - [j52]Tania Lima, Andrea H. Auchincloss, Elisabeth Coudert, Guillaume Keller, Karine Michoud, Catherine Rivoire, Virginie Bulliard, Edouard De Castro, Corinne Lachaize, Delphine Baratin, Isabelle Phan, Lydie Bougueleret, Amos Bairoch:
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot. Nucleic Acids Res. 37(Database-Issue): 471-478 (2009) - [j51]Luiz Gonzaga Almeida, Noboru J. Sakabe, Alice R. de Oliveira, Maria Cristina C. Silva, Alex S. Mundstein, Tzeela Cohen, Yao-Tseng Chen, Ramon Chua, Sita Gurung, Sacha Gnjatic, Achim A. Jungbluth, Otavia L. Caballero, Amos Bairoch, Eva Kiesler, Sarah L. White, Andrew J. G. Simpson, Lloyd J. Old, Anamaria A. Camargo, Ana Tereza Ribeiro de Vasconcelos:
CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens. Nucleic Acids Res. 37(Database-Issue): 816-819 (2009) - 2008
- [j50]Amos Bairoch, Sarah Cohen Boulakia, Christine Froidevaux:
Review of the selected proceedings of the Fifth International Workshop on Data Integration in the Life Sciences 2008. BMC Bioinform. 9(S-8) (2008) - [j49]Nicolas Hulo, Amos Bairoch, Virginie Bulliard, Lorenzo Cerutti, Béatrice A. Cuche, Edouard De Castro, Corinne Lachaize, Petra S. Langendijk-Genevaux, Christian J. A. Sigrist:
The 20 years of PROSITE. Nucleic Acids Res. 36(Database-Issue): 245-249 (2008) - 2007
- [j48]Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise C. Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex L. Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats:
New developments in the InterPro database. Nucleic Acids Res. 35(Database-Issue): 224-228 (2007) - 2006
- [j47]Cathy H. Wu, Rolf Apweiler, Amos Bairoch, Darren A. Natale, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Raja Mazumder, Claire O'Donovan, Nicole Redaschi, Baris E. Suzek:
The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res. 34(Database-Issue): 187-191 (2006) - [j46]Nicolas Hulo, Amos Bairoch, Virginie Bulliard, Lorenzo Cerutti, Edouard De Castro, Petra S. Langendijk-Genevaux, Marco Pagni, Christian J. A. Sigrist:
The PROSITE database. Nucleic Acids Res. 34(Database-Issue): 227-230 (2006) - [j45]Edouard De Castro, Christian J. A. Sigrist, Alexandre Gattiker, Virginie Bulliard, Petra S. Langendijk-Genevaux, Elisabeth Gasteiger, Amos Bairoch, Nicolas Hulo:
ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. Nucleic Acids Res. 34(Web-Server-Issue): 362-365 (2006) - 2005
- [j44]Christian J. A. Sigrist, Edouard De Castro, Petra S. Langendijk-Genevaux, Virginie Le Saux, Amos Bairoch, Nicolas Hulo:
ProRule: a new database containing functional and structural information on PROSITE profiles. Bioinform. 21(21): 4060-4066 (2005) - [j43]Amos Bairoch, Rolf Apweiler, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh:
The Universal Protein Resource (UniProt). Nucleic Acids Res. 33(Database-Issue): 154-159 (2005) - [j42]Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Paul Bradley, Peer Bork, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Jennifer McDowall, Alex L. Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Marco Pagni, Chris P. Ponting, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist, Ville Silventoinen, David J. Studholme, Robert Vaughan, Cathy H. Wu:
InterPro, progress and status in 2005. Nucleic Acids Res. 33(Database-Issue): 201-205 (2005) - 2004
- [j41]Amos Bairoch, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger:
Swiss-Prot: Juggling between evolution and stability. Briefings Bioinform. 5(1): 39-58 (2004) - [j40]Rolf Apweiler, Amos Bairoch, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh:
UniProt: the Universal Protein knowledgebase. Nucleic Acids Res. 32(Database-Issue): 115-119 (2004) - [j39]Nicolas Hulo, Christian J. A. Sigrist, Virginie Le Saux, Petra S. Langendijk-Genevaux, Lorenza Bordoli, Alexandre Gattiker, Edouard De Castro, Philipp Bucher, Amos Bairoch:
Recent improvements to the PROSITE database. Nucleic Acids Res. 32(Database-Issue): 134-137 (2004) - [j38]Astrid Fleischmann, Michael Darsow, Kirill Degtyarenko, Wolfgang Fleischmann, Sinéad Boyce, Kristian B. Axelsen, Amos Bairoch, Dietmar Schomburg, Keith F. Tipton, Rolf Apweiler:
IntEnz, the integrated relational enzyme database. Nucleic Acids Res. 32(Database-Issue): 434-437 (2004) - [j37]Henning Hermjakob, Luisa Montecchi-Palazzi, Chris Lewington, Sugath Mudali, Samuel Kerrien, Sandra E. Orchard, Martin Vingron, Bernd Roechert, Peter Roepstorff, Alfonso Valencia, Hanah Margalit, John Armstrong, Amos Bairoch, Gianni Cesareni, David James Sherman, Rolf Apweiler:
IntAct: an open source molecular interaction database. Nucleic Acids Res. 32(Database-Issue): 452-455 (2004) - 2003
- [j36]Alexandre Gattiker, Karine Michoud, Catherine Rivoire, Andrea H. Auchincloss, Elisabeth Coudert, Tania Lima, Paul J. Kersey, Marco Pagni, Christian J. A. Sigrist, Corinne Lachaize, Anne-Lise Veuthey, Elisabeth Gasteiger, Amos Bairoch:
Automated annotation of microbial proteomes in SWISS-PROT. Comput. Biol. Chem. 27(1): 49-58 (2003) - [j35]Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov:
The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res. 31(1): 315-318 (2003) - [j34]Brigitte Boeckmann, Amos Bairoch, Rolf Apweiler, Marie-Claude Blatter, Anne Estreicher, Elisabeth Gasteiger, Maria Jesus Martin, Karine Michoud, Claire O'Donovan, Isabelle Phan, Sandrine Pilbout, Michel Schneider:
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res. 31(1): 365-370 (2003) - [j33]Elisabeth Gasteiger, Alexandre Gattiker, Christine Hoogland, Ivan Ivanyi, Ron D. Appel, Amos Bairoch:
ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res. 31(13): 3784-3788 (2003) - [j32]I. Q. H. Phan, Sandrine Pilbout, Wolfgang Fleischmann, Amos Bairoch:
NEWT, a new taxonomy portal. Nucleic Acids Res. 31(13): 3822-3823 (2003) - 2002
- [j31]Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist:
InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites. Briefings Bioinform. 3(3): 225-235 (2002) - [j30]Christian J. A. Sigrist, Lorenzo Cerutti, Nicolas Hulo, Alexandre Gattiker, Laurent Falquet, Marco Pagni, Amos Bairoch, Philipp Bucher:
PROSITE: A Documented Database Using Patterns and Profiles as Motif Descriptors. Briefings Bioinform. 3(3): 265-274 (2002) - [j29]Claire O'Donovan, Maria Jesus Martin, Alexandre Gattiker, Elisabeth Gasteiger, Amos Bairoch, Rolf Apweiler:
High-quality Protein Knowledge Resource: SWISS-PROT and TrEMBL. Briefings Bioinform. 3(3): 275-284 (2002) - [j28]Flavio Monigatti, Elisabeth Gasteiger, Amos Bairoch, Eva Jung:
The Sulfinator: predicting tyrosine sulfation sites in protein sequences. Bioinform. 18(5): 769-770 (2002) - [j27]Laurent Falquet, Marco Pagni, Philipp Bucher, Nicolas Hulo, Christian J. A. Sigrist, Kay Hofmann, Amos Bairoch:
The PROSITE database, its status in 2002. Nucleic Acids Res. 30(1): 235-238 (2002) - 2001
- [j26]Rolf Apweiler, Paul J. Kersey, Vivien Junker, Amos Bairoch:
Technical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al. Bioinform. 17(6): 533-534 (2001) - [j25]Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov:
The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res. 29(1): 37-40 (2001) - 2000
- [j24]Amos Bairoch:
Serendipity in bioinformatics, the tribulations of a Swiss bioinformatician through exciting times!. Bioinform. 16(1): 48-64 (2000) - [j23]Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov:
InterPro-an integrated documentation resource for protein families, domains and functional sites. Bioinform. 16(12): 1145-1150 (2000) - [j22]Amos Bairoch, Rolf Apweiler:
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res. 28(1): 45-48 (2000) - [j21]Christine Hoogland, Jean-Charles Sanchez, Luisa Tonella, Pierre-Alain Binz, Amos Bairoch, Denis F. Hochstrasser, Ron D. Appel:
The 1999 SWISS-2DPAGE database update. Nucleic Acids Res. 28(1): 286-288 (2000) - [j20]Amos Bairoch:
The ENZYME database in 2000. Nucleic Acids Res. 28(1): 304-305 (2000) - 1999
- [j19]Vivien L. Junker, Rolf Apweiler, Amos Bairoch:
Representation of functional information in the SWISS-PROT Data Bank. Bioinform. 15(12): 1066-1067 (1999) - [j18]Amos Bairoch, Rolf Apweiler:
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999. Nucleic Acids Res. 27(1): 49-54 (1999) - [j17]Kay Hofmann, Philipp Bucher, Laurent Falquet, Amos Bairoch:
The PROSITE database, its status in 1999. Nucleic Acids Res. 27(1): 215-219 (1999) - [j16]Christine Hoogland, Jean-Charles Sanchez, Luisa Tonella, Amos Bairoch, Denis F. Hochstrasser, Ron D. Appel:
The SWISS-2DPAGE database: what has changed during the last year. Nucleic Acids Res. 27(1): 289-291 (1999) - [j15]Amos Bairoch:
The ENZYME data bank in 1999. Nucleic Acids Res. 27(1): 310-311 (1999) - 1998
- [j14]Amos Bairoch, Rolf Apweiler:
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998. Nucleic Acids Res. 26(1): 38-42 (1998) - [j13]Florence Horn, Jonathan Weare, Margot W. Beukers, S. Hörsch, Amos Bairoch, W. Chen, Øyvind Edvardsen, Fabien Campagne, Gert Vriend:
GPCRDB: an information system for G protein-coupled receptors. Nucleic Acids Res. 26(1): 275-279 (1998) - [j12]Christine Hoogland, Jean-Charles Sanchez, Luisa Tonella, Amos Bairoch, Denis F. Hochstrasser, Ron D. Appel:
Current status of the SWISS-2DPAGE database. Nucleic Acids Res. 26(1): 332-333 (1998) - 1997
- [j11]Amos Bairoch, Rolf Apweiler:
The SWISS-PROT protein sequence data bank and its supplement TrEMBL. Nucleic Acids Res. 25(1): 31-36 (1997) - [j10]Amos Bairoch, Philipp Bucher, Kay Hofmann:
The PROSITE database, its status in 1997. Nucleic Acids Res. 25(1): 217-221 (1997) - 1996
- [j9]Amos Bairoch, Rolf Apweiler:
The SWISS-PROT protein sequence data bank and its new supplement TREMBL. Nucleic Acids Res. 24(1): 21-25 (1996) - [j8]Reinhard Dölz, Marie-Odile Mossé, Piotr P. Slonimski, Amos Bairoch, Patrick Linder:
LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces. Nucleic Acids Res. 24(1): 50-52 (1996) - [j7]Ron D. Appel, Jean-Charles Sanchez, Amos Bairoch, Olivier Golaz, Florence Ravier, Christian Pasquali, Graham J. Hughes, Denis F. Hochstrasser:
The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis, its status in 1995. Nucleic Acids Res. 24(1): 180-181 (1996) - [j6]Amos Bairoch, Philipp Bucher, Kay Hofmann:
The PROSITE database, its status in 1995. Nucleic Acids Res. 24(1): 189-196 (1996) - [j5]Amos Bairoch:
The ENZYME data bank in 1995. Nucleic Acids Res. 24(1): 221-222 (1996) - 1993
- [j4]Amos Bairoch, Brigitte Boeckmann:
The SWISS-PROT protein sequence data bank, recent developments. Nucleic Acids Res. 21(13): 3093-3096 (1993) - [j3]Amos Bairoch:
The PROSITE dictionary of sites and patterns in proteins, its current status. Nucleic Acids Res. 21(13): 3097-3103 (1993) - [j2]Amos Bairoch:
The ENZYME data bank. Nucleic Acids Res. 21(13): 3155-3156 (1993) - 1991
- [j1]Amos Bairoch:
SEQANALREF: a sequence analysis bibliographic reference databank. Comput. Appl. Biosci. 7(2): 268 (1991)
Conference and Workshop Papers
- 2011
- [c6]Guido Bologna, Anne-Lise Veuthey, Marco Pagni, Lydie Lane, Amos Bairoch:
A Preliminary Study on the Prediction of Human Protein Functions. IWINAC (1) 2011: 334-343 - 2008
- [c5]Amos Bairoch:
UniProtKB/Swiss-Prot: New and Future Developments. DILS 2008: 204-206 - 1997
- [c4]Rolf Apweiler, Alain Gateau, Sergio Contrino, Maria Jesus Martin, Vivien Junker, Claire O'Donovan, Fiona Lang, Nicoletta Mitaritonna, Stephanie Kappus, Amos Bairoch:
Protein Sequence Annotation in the Genome Era: The Annotation Concept of SWISS-PROT + TREMBL. ISMB 1997: 33-43 - 1996
- [c3]Rolf Apweiler, Vivien Junker, Alain Gateau, Claire O'Donovan, Fiona Lang, Amos Bairoch:
New Developments in the Linking of Biological Databases and Computer-Generation of Annotation. German Conference on Bioinformatics 1996: 29-34 - [c2]Rolf Apweiler, Vivien Junker, Alain Gateau, Claire O'Donovan, Fiona Lang, Amos Bairoch:
New Developments in Linking of Biological Databases and Computer-Generation of Annotations: SWISS-PROT and Its Computer-Annotated Supplement TREMBL. German Conference on Bioinformatics - Selected Papers 1996: 44-51 - 1994
- [c1]Philipp Bucher, Amos Bairoch:
A Generalized Profile Syntax for Biomolecular Sequence Motifs and its Function in Automatic Sequence Interpretation. ISMB 1994: 53-61
Editorship
- 2008
- [e1]Amos Bairoch, Sarah Cohen Boulakia, Christine Froidevaux:
Data Integration in the Life Sciences, 5th International Workshop, DILS 2008, Evry, France, June 25-27, 2008. Proceedings. Lecture Notes in Computer Science 5109, Springer 2008, ISBN 978-3-540-69827-2 [contents]
Coauthor Index
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